Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F73 I1 R1 29 84.2 2875838 99.2% 2852831 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,429,165 G→T F358L (TTC→TTA)  purF ← amidophosphoribosyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,429,1650GT100.0% 245.9 / NA 69F358L (TTC→TTA) purFamidophosphoribosyltransferase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (35/34);  total (35/34)

CGGGAAGCGAATTTCCGGTGCCGCAGAAGCGAGGTACACTTTCTTCGCTCCGGCTTCGCGTGCCATCTCGATAATCTGCTCAGAAGTGGTGCCACGGACGATGGAGTCGTCGACCAGCAGGACGTTTTTATCGCGGAACTCGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATAAAGGTGCGGCCAACATAGCGGTTTTTAACGAAGCCCTGGCGGTACGGTTTGCCCAGAATACG  >  NC_000913/2429030‑2429296
                                                                                                                                       |                                                                                                                                   
cGGGAAGCGAATTTCCGGTGCCGCAGAAGCGAGGTACACTTTCTTCGCTCCGGCTTCGCGTGCCATCTCGATAATCTGCTCAGAAGTGGTGCCACGGACGATGGAGTCGTCGACCAGCAGGACGTTTTTATCGCGTAACt                                                                                                                                 >  1:1042824/1‑140 (MQ=255)
cGGGAAGCGAATTTCCGGTGCCGCAGAAGCGAGGTACACTTTCTTCGCTCCGGCTTCGCGTGCCATCTCGATAATCTGCTCAGAAGTGGTGCCACGGACGATGGAGTCGTCGACCAGCAGGACGTTTTTATCGCGTAACt                                                                                                                                 >  1:1096512/1‑140 (MQ=255)
      gCGAATTTCCGGTGCCGCAGAAGCGAGGTACACTTTCTTCGCTCCGGCTTCGCGTGCCATCTCGATAATCTGCTCAGAAGTGGTGCCACGGACGATGGAGTCGTCGACCAGCAGGACGTTTTTATCGCGTAACTCGgcgc                                                                                                                           <  2:1115953/140‑1 (MQ=255)
         aaTTTCCGGTGCCGCAGAAGCGAGGTACACTTTCTTCGCTCCGGCTTCGCGTGCCATCTCGATAATCTGCTCAGAAGTGGTGCCACGGACGATGGAGTCGTCGACCAGCAGGACGTTTTTATCGCGTAACTCGGCGCGGt                                                                                                                        <  2:367824/140‑1 (MQ=255)
               cGGTGCCGCAGAAGCGAGGTACACTTTCTTCGCTCCGGCTTCGCGTGCCATCTCGATAATCTGCTCAGAAGTGGTGCCACGGACGATGGAGTCGTCGACCAGCAGGACGTTTTTATCGCGTAACTCGGCGCGGTTGGCAt                                                                                                                  <  2:680827/140‑1 (MQ=255)
                         gAAGCGAGGTACACTTTCTTCGCTCCGGCTTCGCGTGCCATCTCGATAATCTGCTCAGAAGTGGTGCCACGGACGATGGAGTCGTCGACCAGCAGGACGTTTTTATCGCGTAACTCGGCGCGGTTGGCATTCAGTTTACg                                                                                                        <  2:1271580/140‑1 (MQ=255)
                             cGAGGTACACTTTCTTCGCTCCGGCTTCGCGTGCCATCTCGATAATCTGCTCAGAAGTGGTGCCACGGACGATGGAGTCGTCGACCAGCAGGACGTTTTTATCGCGTAACTCGGCGCGGTTGGCATTCAGTTTACGgcgc                                                                                                    <  2:928799/140‑1 (MQ=255)
                              gAGGTACACTTTCTTCGCTCCGGCTTCGCGTGCCATCTCGATAATCTGCTCAGAAGTGGTGCCACGGACGATGGAGTCGTCGACCAGCAGGACGTTTTTATCGCGTAACTCGGCGCGGTTGGCATTCAGTTTACGGCGCa                                                                                                   <  1:854365/140‑1 (MQ=255)
                              gAGGTACACTTTCTTCGCTCCGGCTTCGCGTGCCATCTCGATAATCTGCTCAGAAGTGGTGCCACGGACGATGGAGTCGTCGACCAGCAGGACGTTTTTATCGCGTAACTCGGCGCGGTTGGCATTCAGTTTACGGCGCa                                                                                                   <  1:1416184/140‑1 (MQ=255)
                              gAGGTACACTTTCTTCGCTCCGGCTTCGCGTGCCATCTCGATAATCTGCTCAGAAGTGGTGCCACGGACGATGGAGTCGTCGACCAGCAGGACGTTTTTATCGCGTAACTCGGCGCGGTTGGCATTCAGTTTACGGCGCa                                                                                                   <  2:399596/140‑1 (MQ=255)
                                ggTACACTTTCTTCGCTCCGGCTTCGCGTGCCATCTCGATAATCTGCTCAGAAGTGGTGCCACGGACGATGGAGTCGTCGACCAGCAGGACGTTTTTATCGCGTAACTCGGCGCGGTTGGCATTCAGTTTACGGCGCACg                                                                                                 <  1:449392/140‑1 (MQ=255)
                                 gTACACTTTCTTCGCTCCGGCTTCGCGTGCCATCTCGATAATCTGCTCAGAAGTGGTGCCACGGACGATGGAGTCGTCGACCAGCAGGACGTTTTTATCGCGTAACTCGGCGCGGTTGGCATTCAGTTTACGGCGCACgg                                                                                                >  2:207472/1‑140 (MQ=255)
                                 gTACACTTTCTTCGCTCCGGCTTCGCGTGCCATCTCGATAATCTGCTCAGAAGTGGTGCCACGGACGATGGAGTCGTCGACCAGCAGGACGTTTTTATCGCGTAACTCGGCGCGGTTGGCATTCAGTTTACGGCGCACgg                                                                                                >  1:118897/1‑140 (MQ=255)
                                    cacTTTCTTCGCTCCGGCTTCGCGTGCCATCTCGATAATCTGCTCAGAAGTGGTGCCACGGACGATGGAGTCGTCGACCAGCAGGACGTTTTTATCGCGTAACTCGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACt                                                                                             >  1:359841/1‑140 (MQ=255)
                                         tcttcGCTCCGGCTTCGCGTGCCATCTCGATAATCTGCTCAGAAGTGGTGCCACGGACGATGGAGTCGTCGACCAGCAGGACGTTTTTATCGCGTAACTCGGCGCGGTTGGCATTCAGTTTACg                                                                                                        <  2:1034149/124‑1 (MQ=255)
                                         tcttcGCTCCGGCTTCGCGTGCCATCTCGATAATCTGCTCAGAAGTGGTGCCACGGACGATGGAGTCGTCGACCAGCAGGACGTTTTTATCGCGTAACTCGGCGCGGTTGGCATTCAGTTTACg                                                                                                        >  1:1034149/1‑124 (MQ=255)
                                         tcttcGCTCCGGCTTCGCGTGCCATCTCGATAATCTGCTCAGAAGTGGTGCCACGGACGATGGAGTCGTCGACCAGCAGGACGTTTTTATCGCGTAACTCGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACTTacga                                                                                        >  1:175173/1‑140 (MQ=255)
                                         tcttcGCTCCGGCTTCGCGTGCCATCTCGATAATCTGCTCAGAAGTGGTGCCACGGACGATGGAGTCGTCGACCAGCAGGACGTTTTTATCGCGTAACTCGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACTTacga                                                                                        >  1:540267/1‑140 (MQ=255)
                                           ttcGCTCCGGCTTCGCGTGCCATCTCGATAATCTGCTCAGAAGTGGTGCCACGGACGATGGAGTCGTCGACCAGCAGGACGTTTTTATCGCGTAACTCGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACTTacgacg                                                                                      >  1:1346103/1‑140 (MQ=255)
                                           ttcGCTCCGGCTTCGCGTGCCATCTCGATAATCTGCTCAGAAGTGGTGCCACGGACGATGGAGTCGTCGACCAGCAGGACGTTTTTATCGCGTAACTCGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACTTacgacg                                                                                      >  1:302426/1‑140 (MQ=255)
                                           ttcGCTCCGGCTTCGCGTGCCATCTCGATAATCTGCTCAGAAGTGGTGCCACGGACGATGGAGTCGTCGACCAGCAGGACGTTTTTATCGCGTAACTCGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACTTacgacg                                                                                      >  1:362074/1‑140 (MQ=255)
                                            tcGCTCCGGCTTCGCGTGCCATCTCGATAATCTGCTCAGAAGTGGTGCCACGGACGATGGAGTCGTCGACCAGCAGGACGTTTTTATCGCGTAACTCGGCGCGGTTGGCATTCAGTTTACGGCGCa                                                                                                   <  1:1227483/126‑1 (MQ=255)
                                            tcGCTCCGGCTTCGCGTGCCATCTCGATAATCTGCTCAGAAGTGGTGCCACGGACGATGGAGTCGTCGACCAGCAGGACGTTTTTATCGCGTAACTCGGCGCGGTTGGCATTCAGTTTACGGCGCa                                                                                                   >  2:1227483/1‑126 (MQ=255)
                                            tcGCTCCGGCTTCGCGTGCCATCTCGATAATCTGCTCAGAAGTGGTGCCACGGACGATGGAGTCGTCGACCAGCAGGACGTTTTTATCGCGTAACTCGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACTTACGACGc                                                                                     <  1:207472/140‑1 (MQ=255)
                                                 ccGGCTTCGCGTGCCATCTCGATAATCTGCTCAGAAGTGGTGCCACGGACGATGGAGTCGTCGACCAGCAGGACGTTTTTATCGCGTAACTCGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACTTACGACGCAgctg                                                                                <  1:1125322/140‑1 (MQ=255)
                                                    gCTTCGCGTGCCATCTCGATAATCTGCTCAGAAGTGGTGCCACGGACGATGGAGTCGTCGACCAGCAGGACGTTTTTATCGCGTAACTCGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACTTACGACGCAGctgctg                                                                             >  2:539022/1‑140 (MQ=255)
                                                       tCGCGTGCCATCTCGATAATCTGCTCAGAAGTGGTGCCACGGACGATGGAGTCGTCGACCAGCAGGACGTTTTTATCGCGTAACTCGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGcc                                                                          <  2:118897/140‑1 (MQ=255)
                                                       tCGCGTGCCATCTCGATAATCTGCTCAGAAGTGGTGCCACGGACGATGGAGTCGTCGACCAGCAGGACGTTTTTATCGCGTAACTCGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGcc                                                                          <  1:790484/140‑1 (MQ=255)
                                                       tCGCGTGCCACCTCGATAATCTGCTCAGAAGTGGTGCCACGGACGATGGAGTCGTCGACCAGCAGGACGTTTTTATCGCGTAACTCGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGcc                                                                          <  1:147260/140‑1 (MQ=255)
                                                          cgTGCCATCTCGATAATCTGCTCAGAAGTGGTGCCACGGACGATGGAGTCGTCGACCAGCAGGACGTTTTTATCGCGTAACTCGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCgg                                                                       <  2:362074/140‑1 (MQ=255)
                                                          cgTGCCATCTCGATAATCTGCTCAGAAGTGGTGCCACGGACGATGGAGTCGTCGACCAGCAGGACGTTTTTATCGCGTAACTCGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCgg                                                                       <  2:1042824/140‑1 (MQ=255)
                                                          cgTGCCATCTCGATAATCTGCTCAGAAGTGGTGCCACGGACGATGGAGTCGTCGACCAGCAGGACGTTTTTATCGCGTAACTCGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCgg                                                                       <  1:183573/140‑1 (MQ=255)
                                                          cgTGCCATCTCGATAATCTGCTCAGAAGTGGTGCCACGGACGATGGAGTCGTCGACCAGCAGGACGTTTTTATCGCGTAACTCGGCGCGGTTGGCATTCAGTTTACGACGCACGGACTTACGACGCAGCTGCTGGCCCgg                                                                       <  2:1007359/140‑1 (MQ=255)
                                                            tGCCATCTCGATAATCTGCTCAGAAGTGGTGCCTCGGACGATGGAGTCGTCGACCAGCAGGACGTTTTTATCGCGTAACTCGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCa                                                                     <  2:1374022/140‑1 (MQ=255)
                                                            tGCCATCTCGATAATCTGCTCAGAAGTGGTGCCACGGACGATGGAGTCGTCGACCAGCAGGACGTTTTTATCGCGTAACTCGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCa                                                                     >  1:175693/1‑140 (MQ=255)
                                                                           cTGCTCAGAAGTGGTGCCACGGACGATGGAGTCGTCGACCAGCAGGACGTTTTTATCGCGTAACTCGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATAAAGGTGCGGc                                                      <  2:1346103/140‑1 (MQ=255)
                                                                             gCTCAGAAGTGGTGCCACGGACGATGGAGTCGTCGACCAGCAGGACGTTTTTATCGCGTAACTCGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATAAAGGTGCGGCCa                                                    >  1:1242184/1‑140 (MQ=255)
                                                                             gCTCAGAAGTGGTGCCACGGACGATGGAGTCGTCGACCAGCAGGACGTTTTTATCGCGTAACTCGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATAAAGGTGCGGCCa                                                    >  1:222853/1‑140 (MQ=255)
                                                                               tCAGAAGTGGTGCCACGGACGATGGAGTCGTCGACCAGCAGGACGTTTTTATCGCGTAACTCGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATAAAGGTGc                                                         >  2:970869/1‑133 (MQ=255)
                                                                               tCAGAAGTGGTGCCACGGACGATGGAGTCGTCGACCAGCAGGACGTTTTTATCGCGTAACTCGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATAAAGGTGc                                                         <  1:970869/133‑1 (MQ=255)
                                                                                   aaGTGGTGCCACGGACGATGGAGTCGTCGACCAGCAGGACGTTTTTATCGCGTAACTCGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATAAAGGTGCGGCCAACATAg                                              <  1:55105/140‑1 (MQ=255)
                                                                                        gtgCCACGGACGATGGAGTCGTCGACCAGCAGGACGTTTTTATCGCGTAACTCGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATAAAGGTGCGGCCAACATAGCGGtt                                         >  2:103362/1‑140 (MQ=255)
                                                                                        gtgCCACGGACGATGGAGTCGTCGACCAGCAGGACGTTTTTATCGCGTAACTCGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATAAAGGTGCGGCCAACATAGCGGtt                                         >  2:965843/1‑140 (MQ=255)
                                                                                        gtgCCACGGACGATGGAGTCGTCGACCAGCAGGACGTTTTTATCGCGTAACTCGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATAAAGGTGCGGCCAACATAGCGGtt                                         >  1:310594/1‑140 (MQ=255)
                                                                                        gtgCCACGGACGATGGAGTCGTCGACCAGCAGGACGTTTTTATCGCGTAACTCGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATAAAGGTGCGGCCAACATAGCGGtt                                         >  1:1305064/1‑140 (MQ=255)
                                                                                        gtgCCACGGACGATGGAGTCGTCGACCAGCAGGACGTTTTTATCGCGTAACTCGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATAAAGGTGCGGCCAACATAGCGGtt                                         >  2:622041/1‑140 (MQ=255)
                                                                                        gtgCCACGGACGATGGAGTCGTCGACCAGCAGGACGTTTTTATCGCGTAACTCGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATAAAGGTGCGGCCAACATAGCGGtt                                         >  2:453648/1‑140 (MQ=255)
                                                                                           ccACGGACGATGGAGTCGTCGACCAGCAGGACGTTTTTATCGCGTAACTCGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATAAAGGTGCGGCCAACATAGCGGttttt                                      >  2:1222352/1‑140 (MQ=255)
                                                                                           ccACGGACGATGGAGTCGTCGACCAGCAGGACGTTTTTATCGCGTAACTCGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATAAAGGTGCGGCCAACATAGCGGttttt                                      >  2:1103160/1‑140 (MQ=255)
                                                                                             aCGGACGATGGAGTCGTCGACCAGCAGGACGTTTTTATCGCGTAACTCGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATAAAGGTGCGGCCAACATAGCGGTTTTTaa                                    >  1:267035/1‑140 (MQ=255)
                                                                                               ggACGATGGAGTCGTCGACCAGCAGGACGTTTTTATCGCGTAACTCGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATAAAGGTGCGGCCAACATAGCGGTTTTTAACg                                  <  2:222853/140‑1 (MQ=255)
                                                                                                     tGGAGTCGTCGACCAGCAGGACGTTTTTATCGCGTAACTCGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATAAAGGTGCGGCCAACATAGCGGTTTTTAACGAAGccc                            <  2:1096512/140‑1 (MQ=255)
                                                                                                     tGGAGTCGTCGACCAGCAGGACGTTTTTATCGCGTAACTCGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATAAAGGTGCGGCCAACATAGCGGTTTTTAACGAAGccc                            <  2:302426/140‑1 (MQ=255)
                                                                                                      ggAGTCGTCGACCAGCAGGACGTTTTTATCGCGTAACTCGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATAAAGGTGCGGCCAACATAGCGGTTTTTAACGAAGCCCt                           <  2:540267/140‑1 (MQ=255)
                                                                                                           cgtcgACCAGCAGGACGTTTTTATCGCGTAACTCGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATAAAGGTGCGGCCAACATAGCGGTTTTTAACGAAGCCCTGGCgg                      >  2:547473/1‑140 (MQ=255)
                                                                                                            gtcgACCAGCAGGACGTTTTTATCGCGTAACTCGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATAAAGGTGCGGCCAACATAGCGGTTTTTAACGAAGCCCTGGCGGt                     >  1:649965/1‑140 (MQ=255)
                                                                                                            gtcgACCAGCAGGACGTTTTTATCGCGTAACTCGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATAAAGGTGCGGCCAACATAGCGGTTTTTAACGAAGCCCTGGCGGt                     <  2:175173/140‑1 (MQ=255)
                                                                                                             tcgACCAGCAGGACGTTTTTATCGCGTAACTCGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATAAAGGTGCGGCCAACATAGCGGTTTTTAACGAAGCCCTGGCGGTa                    >  2:538448/1‑140 (MQ=255)
                                                                                                               gACCAGCAGGACGTTTTTATCGCGTAACTCGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATAAAGGTGCGGCCAACATAGCGGTTTTTAACGAAGCCCTGGCGGTACg                  >  2:1044171/1‑140 (MQ=255)
                                                                                                                     cagGACGTTTTTATCGCGTAACTCGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATAAAGGTGCGGCCAACATAGCGGTTTTTAACGAAGCCCTGGCGGTACGGTTTGc            >  2:1065087/1‑140 (MQ=255)
                                                                                                                      agGACGTTTTTATCGCGTAACTCGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATAAAGGTGCGGCCAACATAGCGGTTTTTAACGAAGCCCTGGCGGTACGGTTTGcc           <  2:254713/140‑1 (MQ=255)
                                                                                                                      agGACGTTTTTATCGCGTAACTCGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATAAAGGTGCGGCCAACATAGCGGTTTTTAACGAAGCCCTGGCGGTACGGTTTGcc           <  1:1222352/140‑1 (MQ=255)
                                                                                                                      agGACGTTTTTATCGCGTAACTCGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATAAAGGTGCGGCCAACATAGCGGTTTTTAACGAAGCCCTGGCGGTACGGTTTGcc           <  2:175693/140‑1 (MQ=255)
                                                                                                                       ggACGTTTTTATCGCGTAACTCGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATAAAGGTGCGGCCAACATAGCGGTTTTTAACGAAGCCCTGGCGGTACGGTTTGccc          <  2:649965/140‑1 (MQ=255)
                                                                                                                        gACGTTTTTATCGCGTAACTCGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATAAAGGTGCGGCCAACATAGCGGTTTTTAACGAAGCCCTGGCGGTACGGTTTGccc          >  1:587031/1‑139 (MQ=255)
                                                                                                                        gACGTTTTTATCGCGTAACTCGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATAAAGGTGCGGCCAACATAGCGGTTTTTAACGAAGCCCTGGCGGTACGGTTTGccc          <  2:587031/139‑1 (MQ=255)
                                                                                                                        gACGTTTTTATAGCGTAACTCGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATAAAGGTGCGGCCAACATAGCGGTTTTTAACGAAGCCCTGGCGGTACGGTTTGCCCa         >  2:1168585/1‑140 (MQ=255)
                                                                                                                         aCGTTTTTATCGCGTAACTCGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATAAAGGTGCGGCCAACATAGCGGTTTTTAACGAAGCCCTGGCGGTACGGTTTGCCCAg        >  2:634922/1‑140 (MQ=255)
                                                                                                                           gTTTTTATCGCGTAACTCGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATAAAGGTGCGGCCAACATAGCGGTTTTTAACGAAGCCCTGGCGGTACGGTTTGCCCAGaa      >  2:833955/1‑140 (MQ=255)
                                                                                                                              tttATCGCGTAACTCGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATAAAGGTGCGGCCAACATAGCGGTTTTTAACGAAGCCCTGGCGGTACGGTTTGCCCAGAATAc   <  1:547473/140‑1 (MQ=255)
                                                                                                                               ttATCGCGTAACTCGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATAAAGGTGCGGCCAACATAGCGGTTTTTAACGAAGCCCTGGCGGTACGGTTTGCCCAGAATACg  >  1:1381749/1‑140 (MQ=255)
                                                                                                                                       |                                                                                                                                   
CGGGAAGCGAATTTCCGGTGCCGCAGAAGCGAGGTACACTTTCTTCGCTCCGGCTTCGCGTGCCATCTCGATAATCTGCTCAGAAGTGGTGCCACGGACGATGGAGTCGTCGACCAGCAGGACGTTTTTATCGCGGAACTCGGCGCGGTTGGCATTCAGTTTACGGCGCACGGACTTACGACGCAGCTGCTGGCCCGGCATGATAAAGGTGCGGCCAACATAGCGGTTTTTAACGAAGCCCTGGCGGTACGGTTTGCCCAGAATACG  >  NC_000913/2429030‑2429296

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A