Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A13 F73 I1 R1	31	162.6	5558530	99.2%	5514061	138.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,193,440	G→T	E193* (GAA→TAA)	yqiK →	protein YqiK

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,193,440	0	G	T	100.0%	497.7 / NA	140	E193* (GAA→TAA)	yqiK	protein YqiK
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (73/67); total (73/67)

Only 100 of 141 total aligned reads displayed.

TGCATGAGTTACAGGATACCCGCGAGAACTTTGTGCAGGGGGTGCAAAATACAGTGGCAGAAGACCTGTCGAAAAACGGTCTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAAGAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGACTCAGGAAACAGAGCGCCGTCGCCGCGAACGTAACGAAGTTGAACAGGATGTAGAAGTTGCGGTGCGTGAAAAAAATCGCGATG  >  NC_000913/3193312‑3193575

tgcatgAGTTACAGGATACCCGCGAGAACTTTGTGCAGGGGGTGCAAAATACAGTGGCAGAAGACCTGTCGAAAAACGGTCTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAAt                                                                                                                              <  2:113966/140‑1 (MQ=255)

 gcatgAGTTACAGGATACCCGCGAGAACTTTGTGCAGGGGGTGCAAAATACAGTGGCAGAAGACCTGTCGAAAAACGGTCTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATc                                                                                                                             <  2:1728439/140‑1 (MQ=255)

   atgAGTTACAGGATACCCGCGAGAACTTTGTGCAGGGGGTGCAAAATACAGTGGCAGAAGACCTGTCGAAAAACGGTCTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCg                                                                                                                           <  1:2583698/140‑1 (MQ=255)

       gTTACAGGATACCCGCGAGAACTTTGTGCAGGGGGTGCAAAATACAGTGGCAGAAGACCTGTCGAAAAACGGTCTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACa                                                                                                                       <  2:2313659/140‑1 (MQ=255)

          aCAGGATACCCGCGAGAACTTTGTGCAGGGGGTGCAAAATACAGTGGCAGAAGACCTGTCGAAAAACGGTCTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATg                                                                                                                    >  2:2773540/1‑140 (MQ=255)

              gATACCCGCGAGAACTTTGTGCAGGGGGTGCAAAATACAGTGGCAGAAGACCTGTCGAAAAACGGTCTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCtt                                                                                                                >  2:1497398/1‑140 (MQ=255)

               aTACCCGCGAGAACTTTGTGCAGGGGGTGCAAAATACAGTGGCAGAAGACCTGTCGAAAAACGGTCTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCttt                                                                                                               >  1:1435448/1‑140 (MQ=255)

                tACCCGCGAGAACTTTGTGCAGGGGGTGCAAAATACAGTGGCAGAAGACCTGTCGAAAAACGGTCTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTg                                                                                                              >  1:1318775/1‑140 (MQ=255)

                tACCCGCGAGAACTTTGTGCAGGGGGTGCAAAATACAGTGGCAGAAGACCTGTCGAAAAACGGTCTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTg                                                                                                              >  1:2480519/1‑140 (MQ=255)

                tACCCGCGAGAACTTTGTGCAGGGGGTGCAAAATACAGTGGCAGAAGACCTGTCGAAAAACGGTCTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTg                                                                                                              >  1:928704/1‑140 (MQ=255)

                 aCCCGCGAGAACTTTGTGCAGGGGGTGCAAAATACAGTGGCAGAAGACCTGTCGAAAAACGGTCTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGa                                                                                                             >  1:1256491/1‑140 (MQ=255)

                 aCCCGCGAGAACTTTGTGCAGGGGGTGCAAAATACAGTGGCAGAAGACCTGTCGAAAAACGGTCTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGa                                                                                                             >  1:1623793/1‑140 (MQ=255)

                 aCCCGCGAGAACTTTGTGCAGGGGGTGCAAAATACAGTGGCAGAAGACCTGTCGAAAAACGGTCTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGa                                                                                                             >  1:647855/1‑140 (MQ=255)

                  cccGCGAGAACTTTGTGCAGGGGGTGCAAAATACAGTGGCAGAAGACCTGTCGAAAAACGGTCTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGa                                                                                                             <  2:1744465/139‑1 (MQ=255)

                  cccGCGAGAACTTTGTGCAGGGGGTGCAAAATACAGTGGCAGAAGACCTGTCGAAAAACGGTCTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGAc                                                                                                            >  1:2530661/1‑140 (MQ=255)

                   ccGCGAGAACTTTGTGCAGGGGGTGCAAAATACAGTGGCAGAAGACCTGTCGAAAAACGGTCTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACg                                                                                                           >  1:1348854/1‑140 (MQ=255)

                      cgAGAACTTTGTGCAGGGGGTGCAAAATACAGTGGCAGAAGACCTGTCGAAAAACGGTCTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCg                                                                                                        <  2:1435448/140‑1 (MQ=255)

                      cgAGAACTTTGTGCAGGGGGTGCAAAATACAGTGGCAGAAGACCTGTCGAAAAACGGTCTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCg                                                                                                        <  1:735329/140‑1 (MQ=255)

                      cgAGAACTTTGTGCAGGGGGTGCAAAATACAGTGGCAGAAGACCTGTCGAAAAACGGTCTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCg                                                                                                        >  2:317135/1‑140 (MQ=255)

                      cgAGAACTTTGTGCAGGGGGTGCAAAATACAGTGGCAGAAGACCTGTCGAAAAACGGTCTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCg                                                                                                        <  2:352955/140‑1 (MQ=255)

                      cgAGAACTTTGTGCAGGGGGTGCAAAATACAGTGGCAGAAGACCTGTCGAAAAACGGTCTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCg                                                                                                        >  1:1767933/1‑140 (MQ=255)

                        agaACTTTGTGCAGGGGGTGCAAAATACAGTGGCAGAAGACCTGTCGAAAAACGGTCTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGaa                                                                                                      >  1:834431/1‑140 (MQ=255)

                                gtgCAGGGGGTGCAAAATACAGTGGCAGAAGACCTGTCGAAAAACGGTCTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCg                                                                                                        <  1:1042999/130‑1 (MQ=255)

                                gtgCAGGGGGTGCAAAATACAGTGGCAGAAGACCTGTCGAAAAACGGTCTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCg                                                                                                        >  2:1042999/1‑130 (MQ=255)

                                gtgCAGGGGGTGCAAAATACAGTGGCAGAAGACCTGTCGAAAAACGGTCTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAAc                                                                                              <  2:2432226/140‑1 (MQ=255)

                                   cAGGGGGTGCAAAATACAGTGGCAGAAGACCTGTCGAAAAACGGTCTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAAc                                                                                              >  2:630243/1‑137 (MQ=255)

                                    aGGGGGTGCAAAATACAGTGGCAGAAGACCTGTCGAAAAACGGTCTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCaaa                                                                                          <  2:2607512/140‑1 (MQ=255)

                                    aGGGGGTGCAAAATACAGTGGCAGAAGACCTGTCGAAAAACGGTCTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCaaa                                                                                          >  1:63377/1‑140 (MQ=255)

                                    aGGGGGTGCAAAATACAGTGGCAGAAGACCTGTCGAAAAACGGTCTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCaaa                                                                                          <  2:117457/140‑1 (MQ=255)

                                     gggggTGCAAAATACAGTGGCAGAAGACCTGTCGAAAAACGGTCTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAAc                                                                                         >  2:1103248/1‑140 (MQ=255)

                                      ggggTGCAAAATACAGTGGCAGAAGACCTGTCGAAAAACGGTCTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCg                                                                                                        >  1:594379/1‑124 (MQ=255)

                                         gTGCAAAATACAGTGGCAGAAGACCTGTCGAAAAACGGTCTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGAc                                                                                     <  2:63377/140‑1 (MQ=255)

                                         gTGCAAAATACAGTGGCAGAAGACCTGTCGAAAAACGGTCTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGAc                                                                                     <  2:2352020/140‑1 (MQ=255)

                                          tGCAAAATACAGCGGCAGAAGACCTGTCGAAAAACGGCCTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGACt                                                                                    <  2:1481462/140‑1 (MQ=255)

                                           gCAAAATACAGTGGCAGAAGACCTGTCGAAAAACGGTCTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTg                                                                                       >  2:755267/1‑136 (MQ=255)

                                           gCAAAATACAGTGGCAGAAGACCTGTCGAAAAACGGTCTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTg                                                                                       <  1:755267/136‑1 (MQ=255)

                                            cAAAATACAGTGGCAGAAGACCTGTCGAAAAACGGTCTGGAACTGGATAGCGTTTCACTAACCAACTTTAACCAGACGCCGAAATAACATTTCAATCCGAACAAAGCCTTTGATGCCGAAGGTTTAACCAAATTGataca                                                                                  >  2:2493596/1‑136 (MQ=255)

                                              aaaTACAGTGGCAGAAGACCTGTCGAAAAACGGTCTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGACTCAgg                                                                                <  2:805178/140‑1 (MQ=255)

                                              aaaTACAGTGGCAGAAGACCTGTCGAAAAACGGTCTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGACTCAgg                                                                                <  1:404791/140‑1 (MQ=255)

                                                  aCAGTGGCAGAAGACCTGTCGAAAAACGGTCTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGACTCAGGAAAc                                                                            >  2:572685/1‑140 (MQ=255)

                                                      tGGCAGAAGACCTGTCGAAAAACGGTCTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGACTCAGGAAACagag                                                                        <  2:1318775/140‑1 (MQ=255)

                                                      tGGCAGAAGACCTGTCGAAAAACGGTCTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGACTCAGGAAACagag                                                                        >  2:1347423/1‑140 (MQ=255)

                                                      tGGCAGAAGACCTGTCGAAAAACGGTCTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGACTCAGGAAACagag                                                                        >  1:1023244/1‑140 (MQ=255)

                                                      tGGCAGAAGACCTGTCGAAAAACGGTCTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGACTCAGGAAACagag                                                                        >  2:2703015/1‑140 (MQ=255)

                                                      tGGCAGAAGACCTGTCGAAAAACGGTCTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGACTCAGGAAACagag                                                                        >  2:1540813/1‑140 (MQ=255)

                                                      tGGCAGAAGACCTGTCGAAAAACGGTCTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGACTCAGGAAACagag                                                                        >  1:1924993/1‑140 (MQ=255)

                                                      tGGCAGAAGACCTGTCGAAAAACGGTCTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGACTCAGGAAACagag                                                                        >  1:2740929/1‑140 (MQ=255)

                                                      tGGCAGAAGACCTGTCGAAAAACGGTCTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGACTCAGGAAACagag                                                                        >  1:2276650/1‑140 (MQ=255)

                                                         cAGAAGACCTGTCGAAAAACGGTCTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGACTCAGGAAACAGAgcgc                                                                     >  2:2526160/1‑140 (MQ=255)

                                                         cAGAAGACCTGTCGAAAAACGGTCTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGACTCAGGAAACAGAgcgc                                                                     >  2:1979408/1‑140 (MQ=255)

                                                             agaCCTGTCGAAAAACGGTCTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGACTCAGGAAACAGAGCGCCGTc                                                                 >  1:368272/1‑140 (MQ=255)

                                                                ccTGTCGAAAAACGGTCTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGACTCAGGAAACAGAGCGCCGTcgcc                                                              >  2:296841/1‑140 (MQ=255)

                                                                  tGTCGAAAAACGGTCTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGACTCAGGAAACAGAGCGCCGTcgccgc                                                            >  2:168158/1‑140 (MQ=255)

                                                                   gTCGAAAAACGGTCTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGACTCAGGAAACAGAGCGCCGTCGCcgcg                                                           >  1:1829019/1‑140 (MQ=255)

                                                                    tCGAAAAACGGTCTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGACTCAGGAAACAGAGCGCCGTCGCCGCGa                                                          <  2:2016497/140‑1 (MQ=255)

                                                                     cGAAAAACGGTCTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGACTCAGGAAACAGAGCGCCGTCGCCGCGaa                                                         <  1:317135/140‑1 (MQ=255)

                                                                      gAAAAACGGTCTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGACTCAGGAAACAGAGCGCCGTCGCCGCGAAc                                                        >  2:2258170/1‑140 (MQ=255)

                                                                          aaCGGTCTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGACTCAGGAAACAGAGCGCCGTCGCCGCGAACGTaa                                                    <  1:1103248/140‑1 (MQ=255)

                                                                            cGGTCTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGACTCAGGAAACAGAGCGCCGTCGCCGCGAACGTAACg                                                  <  2:2530661/140‑1 (MQ=255)

                                                                            cGGTCTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGACTCAGGAAACAGAGCGCCGTCGCCGCGAACGTAACg                                                  <  1:2126086/140‑1 (MQ=255)

                                                                              gTCTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGACTCAGGAAACAGAGCGCCGTCGCCGCGAACGTAACGaa                                                >  1:837038/1‑140 (MQ=255)

                                                                              gTCTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGACTCAGGAAACAGAGCGCCGTCGCCGCGAACGTAACGaa                                                >  1:2249922/1‑140 (MQ=255)

                                                                              gTCTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGACTCAGGAAACAGAGCGCCGTCGCCGCGAACGTAACGaa                                                >  2:1578706/1‑140 (MQ=255)

                                                                               tCTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGACTCAGGAAACAGAGCGCCGTCGCCGCGAACGTAACGAAg                                               <  1:611011/140‑1 (MQ=255)

                                                                               tCTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGACTCAGGAAACAGAGCGCCGTCGCCGCGAACGTAACGAAg                                               <  2:1623793/140‑1 (MQ=255)

                                                                                cTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGACTCAGGAAACAGAGCGCCGTCGCCGCGAACGTAACGAAGt                                              <  2:1829019/140‑1 (MQ=255)

                                                                                    aaCTGGAGAGCGTTTCACTTACCAACTTTAACCAGTCCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGACTCAGGAAACAGAGCGCCGTCGCCGCGAACGTAACGAAGTTGaa                                          <  1:2493596/140‑1 (MQ=255)

                                                                                    aaCTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGACTCAGGAAACAGAGCGCCGTCGCCGCGAACGTAACGAAGTTGaa                                          <  1:1540813/140‑1 (MQ=255)

                                                                                    aaCTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGACTCAGGAAACAGAGCGCCGTCGCCGCGAACGTAACGAAGTTGaa                                          <  1:1699163/140‑1 (MQ=255)

                                                                                    aaCTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGACTCAGGAAACAGAGCGCCGTCGCCGCGAACGTAACGAAGTTGaa                                          <  1:168158/140‑1 (MQ=255)

                                                                                    aaCTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGACTCAGGAAACAGAGCGCCGTCGCCGCGAACGTAACGAAGTTGaa                                          <  1:124340/140‑1 (MQ=255)

                                                                                    aaCTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGACTCAGGAAACAGAGCGCCGTCGCCGCGAACGTAACGAAGTTGaa                                          <  2:566876/140‑1 (MQ=255)

                                                                                    aaCTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGACTCAGGAAACAGAGCGCCGTCGCCGCGAACGTAACGAAGTTGaa                                          <  2:928704/140‑1 (MQ=255)

                                                                                      cTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGACTCAGGAAACAGAGCGCCGTCGCCGCGAACGTAACGAAGTTGAACa                                        <  2:368272/140‑1 (MQ=255)

                                                                                      cTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGACTCAGGAAACAGAGCGCCGTCGCCGCGAACGTAACGAAGTTGAACa                                        <  1:2703015/140‑1 (MQ=255)

                                                                                       tGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGACTCAGGAAACAGAGCGCCGTCGCCGCGAACGTAACGAAGTTGAACAg                                       <  2:1458771/140‑1 (MQ=255)

                                                                                        ggAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGACTCAGGAAACAGAGCGCCGTCGCCGCGAACGTAACGAAGTTGAACAgg                                      >  2:1272524/1‑140 (MQ=255)

                                                                                         gagaGCGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGACTCAGGAAACAGAGCGCCGTCGCCGCGAACGTAACGAAGTTGAACAGGa                                     >  2:2429558/1‑140 (MQ=255)

                                                                                              cGTTTCACTTATCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGACTCAGGAAACAGAGCGCCGTCGCCGCGAACGTAACGAAGTTGaa                                          >  1:1619049/1‑130 (MQ=255)

                                                                                              cGTTTCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGACTCAGGAAACAGAGCGCCGTCGCCGCGAACGTAACGAAGTTGAACAgg                                      >  1:175322/1‑134 (MQ=255)

                                                                                                tttCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGACTCAGGAAACAGAGCGCCGTCGCCGCGAACGTAACGAAGTTGAACAGGATGTAGaa                              >  2:665834/1‑140 (MQ=255)

                                                                                                 ttCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGACTCAGGAAACAGAGCGCCGTCGCCGCGAACGTAACGAAGTTGAACa                                        >  2:2640172/1‑129 (MQ=255)

                                                                                                 ttCACTTACCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGACTCAGGAAACAGAGCGCCGTCGCCGCGAACGTAACGAAGTTGAACa                                        <  1:2640172/129‑1 (MQ=255)

                                                                                                        aCCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGACTCAGGAAACAGAGCGCCGTCGCCGCGAACGTAACGAAGTTGAACAGGATGTAGAAGTTGCGGt                      <  1:572685/140‑1 (MQ=255)

                                                                                                        aCCAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGACTCAGGAAACAGAGCGCCGTCGCCGCGAACGTAACGAAGTTGAACAGGATGTAGAAGTTGCGGt                      <  2:834431/140‑1 (MQ=255)

                                                                                                          cAACTTTAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGACTCAGGAAACAGAGCGCCGTCGCCGCGAACGTAACGAAGTTGAACAGGATGTAGAAGTTGCGGTGc                    <  1:2417922/140‑1 (MQ=255)

                                                                                                               ttAACCAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGACTCAGGAAACAGAGCGCCGTCGCCGCGAACGTAACGAAGTTGAACAGGATGTAGAAGTTGCGGTGCGTGaa               <  2:1634894/140‑1 (MQ=255)

                                                                                                                  aCCAGACCTCGAAATAACATTTCAATCCGAACAATGTCTTTGACGCCGAAGGTTTAACCAAACTGACTCAGGAAACAGAGCGCCGTCGCCGCGAACGTAACGAAGTTGAACAGGATGTAGAAGTTGCGGTGCGTGaaaaa            >  1:1035376/1‑140 (MQ=255)

                                                                                                                    cAGACCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGACTCAGGAAACAGAGCGCCGTCGCCGCGAACGTAACGAAGTTGAACAGGATGTAGAAGTTGCGGTGCGTGaaaaaaa          <  1:2777628/140‑1 (MQ=255)

                                                                                                                       aCCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGACTCAGGAAACAGAGCGCCGTCGCCGCGAACGTAACGAAGTTGAACAGGATGTAGAAGTTGCGGTGCGTGAAAAAAATcg       >  2:2594986/1‑140 (MQ=255)

                                                                                                                       aCCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGACTCAGGAAACAGAGCGCCGTCGCCGCGAACGTAACGAAGTTGAACAGGATGTAGAAGTTGCGGTGCGTGAAAAAAATcg       >  2:1535837/1‑140 (MQ=255)

                                                                                                                       aCCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGACTCAGGAAACAGAGCGCCGTCGCCGCGAACGTAACGAAGTTGAACAGGATGTAGAAGTTGCGGTGCGTGAAAAAAATcg       >  2:1209850/1‑140 (MQ=255)

                                                                                                                       aCCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGACTCAGGAAACAGAGCGCCGTCGCCGCGAACGTAACGAAGTTGAACAGGATGTAGAAGTTGCGGTGCGTGAAAAAAATcg       >  2:1126983/1‑140 (MQ=255)

                                                                                                                       aCCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGACTCAGGAAACAGAGCGCCGTCGCCGCGAACGTAACGAAGTTGAACAGGATGTAGAAGTTGCGGTGCGTGAAAAAAATcg       >  2:1015541/1‑140 (MQ=255)

                                                                                                                       aCCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGACTCAGGAAACAGAGCGCCGTCGCCGCGAACGTAACGAAGTTGAACAGGATGTAGAAGTTGCGGTGCGTGAAAAAAATcg       >  1:2736477/1‑140 (MQ=255)

                                                                                                                       aCCTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGACTCAGGAAACAGAGCGCCGTCGCCGCGAACGTAACGAAGTTGAACAGGATGTAGAAGTTGCGGTGCGTGAAAAAAATcg       <  1:1126983/140‑1 (MQ=255)

                                                                                                                        ccTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGACTCAGGAAACAGAGCGCCGTCGCCGCGAACGTAACGAAGTTGAACAGGATGTAGAAGTTGCGGTGCGTGaa               <  2:2672024/131‑1 (MQ=255)

                                                                                                                        ccTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGACTCAGGAAACAGAGCGCCGTCGCCGCGAACGTAACGAAGTTGAACAGGATGTAGAAGTTGCGGTGCGTGaa               >  1:2672024/1‑131 (MQ=255)

                                                                                                                        ccTCGAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGACTCAGGAAACAGAGCGCCGTCGCCGCGAACGTAACGAAGTTGAACAGGATGTAGAAGTTGCGGTGCGTGAAAAAAATcgc      >  1:343029/1‑140 (MQ=255)

                                                                                                                            gAAATAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGACTCAGGAAACAGAGCGCCGTCGCCGCGAACGTAACGAAGTTGAACAGGATGTAGAAGTTGCGGTGCGTGAAAAAAATCGCGATg  <  2:2249922/140‑1 (MQ=255)

TGCATGAGTTACAGGATACCCGCGAGAACTTTGTGCAGGGGGTGCAAAATACAGTGGCAGAAGACCTGTCGAAAAACGGTCTGGAACTGGAGAGCGTTTCACTTACCAACTTTAACCAGACCTCGAAAGAACATTTCAATCCGAACAATGCCTTTGACGCCGAAGGTTTAACCAAACTGACTCAGGAAACAGAGCGCCGTCGCCGCGAACGTAACGAAGTTGAACAGGATGTAGAAGTTGCGGTGCGTGAAAAAAATCGCGATG  >  NC_000913/3193312‑3193575

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A