Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A14 F73 I1 R1 28 130.3 4467684 99.3% 4436410 139.3

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,182,494 C→A S417Y (TCC→TAC)  rpoB → RNA polymerase subunit beta

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,182,4940CA100.0% 423.3 / NA 119S417Y (TCC→TAC) rpoBRNA polymerase subunit beta
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (52/67);  total (52/67)

Only 100 of 119 total aligned reads displayed.

CCCTGGCGAGCCGCCGACTCGTGAAGCAGCTGAAAGCCTGTTCGAGAACCTGTTCTTCTCCGAAGACCGTTATGACTTGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTCCGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACCACCTCGGCAACCGTCGTATCCGTTCCGTTGGCGAAATGGCGGAAAAC  >  NC_000913/4182357‑4182630
                                                                                                                                         |                                                                                                                                        
cccTGGCGAGCCGCCGACTCGTGAAGCAGCTGAAAGCCTGTTCGAGAACCTGTTCTTCTCCGAAGACCGTTATGACTTGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACg                                                                                                                                        <  2:602487/140‑1 (MQ=255)
 ccTGGCGAGCCGCCGACTCGTGAAGCAGCTGAAAGCCTGTTCGAGAACCTGTTCTTCTCCGAAGACCGTTATGACTTGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACgg                                                                                                                                       >  2:1896573/1‑140 (MQ=255)
  cTGGCGAGCCGCCGACTCGTGAAGCAGCTGAAAGCCTGTTCGAGAACCTGTTCTTCTCCGAAGACCGTTATGACTTGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGt                                                                                                                                      <  2:1317888/140‑1 (MQ=255)
     gCGAGCCGCCGACTCGTGAAGCAGCTGAAAGCCTGTTCGAGAACCTGTTCTTCTCCGAAGACCGTTATGACTTGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATc                                                                                                                                   >  2:92280/1‑140 (MQ=255)
     gCGAGCCGCCGACTCGTGAAGCAGCTGAAAGCCTGTTCGAGAACCTGTTCTTCTCCGAAGACCGTTATGACTTGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATc                                                                                                                                   <  1:2097696/140‑1 (MQ=255)
     gCGAGCCGCCGACTCGTGAAGCAGCTGAAAGCCTGTTCGAGAACCTGTTCTTCTCCGAAGACCGTTATGACTTGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATc                                                                                                                                   >  1:2083995/1‑140 (MQ=255)
      cGAGCCGCCGACTCGTGAAGCAGCTGAAAGCCTGTTCGAGAACCTGTTCTTCTCCGAAGACCGTTATGACTTGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATcc                                                                                                                                  <  2:1531444/140‑1 (MQ=255)
       gAGCCGCCGACTCGTGAAGCAGCTGAAAGCCTGTTCGAGAACCTGTTCTTCTCCGAAGACCGTTATGACTTGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCt                                                                                                                                 <  2:2070394/140‑1 (MQ=255)
          ccgccgACTCGTGAAGCAGCTGAAAGCCTGTTCGAGAACCTGTTCTTCTCCGAAGACCGTTATGACTTGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAg                                                                                                                              >  1:102453/1‑140 (MQ=255)
           cgccgACTCGTGAAGCAGCTGAAAGCCTGTTCGAGAACCTGTTCTTCTCCGAAGACCGTTATGACTTGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGc                                                                                                                             >  2:201948/1‑140 (MQ=255)
           cgccgACTCGTGAAGCAGCTGAAAGCCTGTTCGAGAACCTGTTCTTCTCCGAAGACCGTTATGACTTGTCTGCGGTTGGTCGTATGAAGTCCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACg                                                                                                                                        >  1:1721277/1‑129 (MQ=255)
            gccgACTCGTGAAGCAGCTGAAAGCCTGTTCGAGAACCTGTTCTTCTCCGAAGACCGTTATGACTTGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCa                                                                                                                            <  2:431130/140‑1 (MQ=255)
            gccgACTCGTGAAGCAGCTGAAAGCCTGTTCGAGAACCTGTTCTTCTCCGAAGACCGTTATGACTTGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCa                                                                                                                            <  2:216010/140‑1 (MQ=255)
            gccgACTCGTGAAGCAGCTGAAAGCCTGTTCGAGAACCTGTTCTTCTCCGAAGACCGTTATGACTTGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCa                                                                                                                            <  2:878700/140‑1 (MQ=255)
            gccgACTCGTGAAGCAGCTGAAAGCCTGTTCGAGAACCTGTTCTTCTCCGAAGACCGTTATGACTTGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCa                                                                                                                            <  1:1840812/140‑1 (MQ=255)
             ccgACTCGTGAAGCAGCTGAAAGCCTGTTCGAGAACCTGTTCTTCTCCGAAGACCGTTATGACTTGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCaa                                                                                                                           >  1:1048818/1‑140 (MQ=255)
               gACTCGTGAAGCAGCTGAAAGCCTGTTCGAGAACCTGTTCTTCTCCGAAGACCGTTATGACTTGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCTTGAGCAAAg                                                                                                                         >  2:1888622/1‑140 (MQ=255)
                 cTCGTGAAGCAGCTGAAAGCCTGTTCGAGAACCTGTTCTTCTCCGAAGACCGTTATGACTTGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAgac                                                                                                                       <  2:454121/140‑1 (MQ=255)
                 cTCGTGAAGCAGCTGAAAGCCTGTTCGAGAACCTGTTCTTCTCCGAAGACCGTTATGACTTGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAgac                                                                                                                       <  2:2074711/140‑1 (MQ=255)
                   cGTGAAGCAGCTGAAAGCCTGTTCGAGAACCTGTTCTTCTCCGAAGACCGTTATGACTTGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAgacga                                                                                                                     <  1:1103060/140‑1 (MQ=255)
                   cGTGAAGCAGCTGAAAGCCTGTTCGAGAACCTGTTCTTCTCCGAAGACCGTTATGACTTGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAgacga                                                                                                                     <  2:1190329/140‑1 (MQ=255)
                   cGTGAAGCAGCTGAAAGCCTGTTCGAGAACCTGTTCTTCTCCGAAGACCGTTATGACTTGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAgacga                                                                                                                     <  1:1171812/140‑1 (MQ=255)
                    gTGAAGCAGCTGAAAGCCTGTTCGAGAACCTGTTCTTCTCCGAAGACCGTTATGACTTGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAgacgac                                                                                                                    >  1:986370/1‑140 (MQ=255)
                    gTGAAGCAGCTGAAAGCCTGTTCGAGAACCTGTTCTTCTCCGAAGACCGTTATGACTTGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAgacgac                                                                                                                    <  2:687830/140‑1 (MQ=255)
                    gTGAAGCAGCTGAAAGCCTGTTCGAGAACCTGTTCTTCTCCGAAGACCGTTATGACTTGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAgacgac                                                                                                                    <  2:1251783/140‑1 (MQ=255)
                    gTGAAGCAGCTGAAAGCCTGTTCGAGAACCTGTTCTTCTCCGAAGACCGTTATGACTTGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAgacgac                                                                                                                    <  1:2104700/140‑1 (MQ=255)
                    gTGAAGCAGCTGAAAGCCTGTTCGAGAACCTGTTCTTCTCCGAAGACCGTTATGACTTGTCTGCGGTTGGTCGTATGAAGATCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAgacgac                                                                                                                    >  1:378590/1‑140 (MQ=255)
                         gcagcTGAAAGCCTGTTCGAGAACCTGTTCTTCTCCGAAGACCGTTATGACTTGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGAcatcat                                                                                                               <  1:623872/140‑1 (MQ=255)
                          cagcTGAAAGCCTGTTCGAGAACCTGTTCTTCTCCGAAGACCGTTATGACTTGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCAtt                                                                                                              <  1:1896573/140‑1 (MQ=255)
                           agcTGAAAGCCTGTTCGAGAACCTGTTCTTCTCCGAAGACCGTTATGACTTGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTg                                                                                                             <  2:439616/140‑1 (MQ=255)
                            gcTGAAAGCCTGTTCGAGAACCTGTTCTTCTCCGAAGACCGTTATGACTTGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGa                                                                                                            >  2:111256/1‑140 (MQ=255)
                            gcTGAAAGCCTGTTCGAGAACCTGTTCTTCTCCGAAGACCGTTATGACTTGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGa                                                                                                            >  2:786461/1‑140 (MQ=255)
                              tGAAAGCCTGTTCGAGAACCTGTTCTTCTCCGAAGACCGTTATGACTTGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGATg                                                                                                          >  2:1311827/1‑140 (MQ=255)
                               gAAAGCCTGTTCGAGAACCTGTTCTTCTCCGAAGACCGTTATGACTTGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGATGt                                                                                                         <  2:703582/140‑1 (MQ=255)
                               gAAAGCCTGTTCGAGAACCTGTTCTTCTCCGAAGACCGTTATGACTTGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGATGt                                                                                                         <  1:603283/140‑1 (MQ=255)
                                aaaGCCTGTTCGAGAACCTGTTCTTCTCCGAAGACCGTTATGACTTGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGATGtt                                                                                                        <  2:452246/140‑1 (MQ=255)
                                    ccTGTTCGAGAACCTGTTCTTCTCCGAAGACCGTTATGACTTGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGATGTTATGa                                                                                                    >  2:1167246/1‑140 (MQ=255)
                                      tGTTCGAGAACCTGTTCTTCTCCGAAGACCGTTATGACTTGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCAAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGATGTTATGaaa                                                                                                  <  1:1607610/140‑1 (MQ=255)
                                       gTTCGAGAACCTGTTCTTCTCCGAAGACCGTTATGACTTGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCAtt                                                                                                              >  1:517250/1‑127 (MQ=255)
                                       gTTCGAGAACCTGTTCTTCTCCGAAGACCGTTATGACTTGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGATGTTATGaaaa                                                                                                 <  1:1807457/140‑1 (MQ=255)
                                        ttCGAGAACCTGTTCTTCTCCGAAGACCGTTATGACTTGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGATGTTATGaaaaa                                                                                                <  2:1744883/140‑1 (MQ=255)
                                          cGAGAACCTGTTCTTCTCCGAAGACCGTTATGACTTGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGc                                                                                              >  2:1844749/1‑140 (MQ=255)
                                             gaACCTGTTCTTCTCCGAAGACCGTTATGACTTGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCa                                                                                           >  2:1442921/1‑140 (MQ=255)
                                                ccTGTTCTTCTCCGAAGACCGTTATGACTTGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCg                                                                                        <  2:986370/140‑1 (MQ=255)
                                                  tGTTCTTCTCCGAAGACCGTTATGACTTGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGat                                                                                      <  2:183051/140‑1 (MQ=255)
                                                  tGTTCTTCTCCGAAGACCGTTATGACTTGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGat                                                                                      <  2:1982510/140‑1 (MQ=255)
                                                  tGTTCTTCTCCGAAGACCGTTATGACTTGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGat                                                                                      >  1:130883/1‑140 (MQ=255)
                                                        tctcCGAAGACCGTTATGACTTGTCTGCGGTTGGTCGTATGCAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGt                                                                                <  2:2193233/140‑1 (MQ=255)
                                                        tctcCGAAGACCGTTATGACTTGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGTTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGt                                                                                <  2:1864954/140‑1 (MQ=255)
                                                        tctcCGAAGACCGTTATGACTTGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGt                                                                                >  1:494553/1‑140 (MQ=255)
                                                        tctcCGAAGACCGTTATGACTTGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGt                                                                                <  2:1000961/140‑1 (MQ=255)
                                                         ctcCGAAGACCGTTATGACTTGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTa                                                                               >  2:571980/1‑140 (MQ=255)
                                                         ctcCGAAGACCGTTATGACTTGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTa                                                                               >  1:498551/1‑140 (MQ=255)
                                                         ctcCGAAGACCGTTATGACTTGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTa                                                                               >  2:896822/1‑140 (MQ=255)
                                                             gAAGACCGTTATGACTTGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACgg                                                                           >  1:182393/1‑140 (MQ=255)
                                                                 aCCGTTATGACTTGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTaaa                                                                       <  2:1048818/140‑1 (MQ=255)
                                                                   cGTTATGACTTGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAgg                                                                     >  1:1061880/1‑140 (MQ=255)
                                                                   cGTTATGACTTGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAACAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAAc                                                                             <  2:207374/132‑1 (MQ=255)
                                                                     ttATGACTTGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCg                                                                   <  1:1302525/140‑1 (MQ=255)
                                                                     ttATGACTTGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCg                                                                   >  2:1007234/1‑140 (MQ=255)
                                                                     ttATGACTTGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCg                                                                   <  1:1630375/140‑1 (MQ=255)
                                                                     ttATGACTTGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCg                                                                   <  2:1010788/140‑1 (MQ=255)
                                                                       aTGACTTGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGaa                                                                 <  2:1526483/140‑1 (MQ=255)
                                                                       aTGACTTGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGaa                                                                 <  1:201948/140‑1 (MQ=255)
                                                                       aTGACTTGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGaa                                                                 <  1:1442921/140‑1 (MQ=255)
                                                                       aTGACTTGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGaa                                                                 <  2:415722/140‑1 (MQ=255)
                                                                            ttGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCga                                                            <  1:1007234/140‑1 (MQ=255)
                                                                            ttGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCga                                                            <  1:758537/140‑1 (MQ=255)
                                                                            ttGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCga                                                            <  2:498551/140‑1 (MQ=255)
                                                                             tGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCg                                                                   >  1:528005/1‑132 (MQ=255)
                                                                             tGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCg                                                                   <  2:528005/132‑1 (MQ=255)
                                                                                        ggTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGacca                                                >  1:2177029/1‑140 (MQ=255)
                                                                                        ggTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGacca                                                >  1:712187/1‑140 (MQ=255)
                                                                                         gTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGaccac                                               >  2:1513167/1‑140 (MQ=255)
                                                                                         gTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGaccac                                               >  2:22746/1‑140 (MQ=255)
                                                                                         gTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGaccac                                               >  2:61419/1‑140 (MQ=255)
                                                                                              aTGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACCACCTCgg                                          <  2:725631/140‑1 (MQ=255)
                                                                                              aTGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGATAAAGGCGAAGTCGATGATATCGACCACCTCgg                                          <  2:673615/140‑1 (MQ=255)
                                                                                                gAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACCACCTCGGCa                                        <  1:1167246/140‑1 (MQ=255)
                                                                                                 aaGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACCACCTCGGCaa                                       <  2:2083995/140‑1 (MQ=255)
                                                                                                 aaGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACCACCTCGGCaa                                       <  1:1479680/140‑1 (MQ=255)
                                                                                                 aaGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACCACCTCGGCaa                                       <  1:715288/140‑1 (MQ=255)
                                                                                                  aGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACCACCTCGGCAAc                                      <  1:1019333/140‑1 (MQ=255)
                                                                                                    ttCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACCACCTCGGCa                                        <  2:1896160/136‑1 (MQ=255)
                                                                                                    ttCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACCACCTCGGCa                                        >  1:1896160/1‑136 (MQ=255)
                                                                                                    ttCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACCACCTCGGCAACcg                                    >  1:1073880/1‑140 (MQ=255)
                                                                                                    ttCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACCACCTCGGCAACcg                                    >  1:1870842/1‑140 (MQ=255)
                                                                                                    ttCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACCACCTCGGCAACcg                                    >  2:1174431/1‑140 (MQ=255)
                                                                                                    ttCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACCACCTCGGCAACcg                                    >  2:1310127/1‑140 (MQ=255)
                                                                                                     tCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACCACCTCGGCAACcgt                                   <  1:1134573/140‑1 (MQ=255)
                                                                                                              ctctGCTGCGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACCACCTCGGCAACCGTCGTAtccgt                          >  1:730984/1‑140 (MQ=255)
                                                                                                                  gctgcGCGAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACCACCTCGGCAACCGTCGTAtccgttccg                      <  2:730984/140‑1 (MQ=255)
                                                                                                                      cgcgAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACCACCTCGGCAACCGTCGTATCCGTTCCGTTgg                  >  1:1889509/1‑140 (MQ=255)
                                                                                                                      cgcgAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACCACCTCGGCAACCGTCGTATCCGTTCCGTTgg                  >  2:269237/1‑140 (MQ=255)
                                                                                                                      cgcgAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACCACCTCGGCAACCGTCGTATCCGTTCCGTTgg                  >  2:1325525/1‑140 (MQ=255)
                                                                                                                        cgAAGAAATCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACCACCTCGGCAACCGTCGTATCCGTTCCGTTGGCg                >  2:110572/1‑140 (MQ=255)
                                                                                                                             aaaTCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACCACCTCGGCAACCGTCGTATCCGTTCCGTTGGCGAAATg           >  2:669054/1‑140 (MQ=255)
                                                                                                                              aaTCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACCACCTCGGCAACCGTCGTATCCGTTCCGTTGGCGAAATgg          <  1:1383024/140‑1 (MQ=255)
                                                                                                                                tCGAAGGTTACGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACCACCTCGGCAACCGTCGTATCCGTTCCGTTGGCGAAATGGCg        >  1:1199552/1‑140 (MQ=255)
                                                                                                                                      gTTACGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACCACCTCGGCAACCGTCGTATCCGTTCCGTTGGCGAAATGGCGGAAAAc  <  1:306701/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                        
CCCTGGCGAGCCGCCGACTCGTGAAGCAGCTGAAAGCCTGTTCGAGAACCTGTTCTTCTCCGAAGACCGTTATGACTTGTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTCCGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACCACCTCGGCAACCGTCGTATCCGTTCCGTTGGCGAAATGGCGGAAAAC  >  NC_000913/4182357‑4182630

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A