Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F73 I1 R1	29	73.0	2473040	99.2%	2453255	138.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,618,191	C→A	intergenic (+89/‑38)	deoC → / → deoA	deoxyribose‑phosphate aldolase/thymidine phosphorylase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,618,191	0	C	A	100.0%	234.3 / NA	65	intergenic (+89/‑38)	deoC/deoA	deoxyribose‑phosphate aldolase/thymidine phosphorylase
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (35/30); total (35/30)

CTGAAAGCGCTGGGTCACGGCGACGGTAAGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTAGGCCGGATAAGGCGTAGACGCATCCGGCAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGCACAAGAAATTATTCGTAAAAAACGTGATGGTCATGCGCTGAGCGATGAAGAAATTCGTTTCTTTATCAACGGTATTCGCGACAACA  >  NC_000913/4618055‑4618325

ctgAAAGCGCTGGGTCACGGCGACGGTAAGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTAGGCCGGATAAGGCGTAGACGCATCCGGaaaa                                                                                                                                     >  2:556565/1‑140 (MQ=255)

 tgAAAGCGCTGGGTCACGGCGACGGTAAGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGGTGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTAGGCCGGATAAGGCGTAGACGCATCCGGAaaaa                                                                                                                                    >  2:190896/1‑140 (MQ=255)

   aaaGCGCTGGGTCACGGCGACGGTAAGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTAGGCCGGATAAGGCGTAGACGCATCCGGAAAAAgc                                                                                                                                  <  2:911854/140‑1 (MQ=255)

    aaGCGCTGGGTCACGGCGACGGTAAGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGGTGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTAGGCCGGATAAGGCGTAGACGCATCCGGAAAAAgcc                                                                                                                                 <  1:190896/140‑1 (MQ=255)

    aaGCGCTGGGTCACGGCGACGGTAAGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTAGGCCGGATAAGGCGTAGACGCATCCGGAAAAAgcc                                                                                                                                 <  1:556565/140‑1 (MQ=255)

     aGCGCTGGGTCACGGCGACGGTAAGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTAGGCCGGATAAGGCGTAGACGCATCCGGAAAAAgccg                                                                                                                                <  1:439784/140‑1 (MQ=255)

     aGCGCTGGGTCACGGCGACGGTAAGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTAGGCCGGATAAGGCGTAGACGCATCCGGAAAAAgccg                                                                                                                                >  2:516265/1‑140 (MQ=255)

         cTGGGTCACGGCGACGGTAAGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTAGGCCGGATAAGGCGTAGACGCATCCGGAAAAAGCCGCCTc                                                                                                                            <  1:516265/140‑1 (MQ=255)

         cTGGGTCACGGCGACGGTAAGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTAGGCCGGATAAGGCGTAGACGCATCCGGAAAAAGCCGCCTc                                                                                                                            >  1:3866/1‑140 (MQ=255)

          tGGGTCACGGCGACGGTAAGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTAGGCCGGATAAGGCGTAGACGCATCCGGAAAAAgcc                                                                                                                                 <  2:208302/134‑1 (MQ=255)

          tGGGTCACGGCGACGGTAAGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTAGGCCGGATAAGGCGTAGACGCATCCGGAAAAAgcc                                                                                                                                 >  1:208302/1‑134 (MQ=255)

          tGGGTCACGGCGACGGTAAGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTAGGCCGGATAAGGCGTAGACGCATCCGGAAAAAGCCGCCTCa                                                                                                                           <  2:449106/140‑1 (MQ=255)

          tGGGTCACGGCGACGGTAAGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTAGGCCGGATAAGGCGTAGACGCATCCGGAAAAAGCCGCCTCa                                                                                                                           <  2:1136317/140‑1 (MQ=255)

           gggTCACGGCGACGGTAAGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTAGGCCGGATAAGGCGTAGACGCATCCGGAAAAAGCCGCCTCAt                                                                                                                          >  2:276680/1‑140 (MQ=255)

           gggTCACGGCGACGGTAAGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTAGGCCGGATAAGGCGTAGACGCATCCGGAAAAAGCCGCCTCAt                                                                                                                          >  1:255811/1‑140 (MQ=255)

                 cGGCGACGGTAAGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTAGGCCGGATAAGGCGTAGACGCATCCGGAAAAAgcc                                                                                                                                 <  1:130884/127‑1 (MQ=255)

                 cGGCGACGGTAAGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTAGGCCGGATAAGGCGTAGACGCATCCGGAAAAAgcc                                                                                                                                 >  2:130884/1‑127 (MQ=255)

                      aCGGTAAGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTAGGCCGGATAAGGCGTAGACGCATCCGGAAAAAGCCGCCTCATACTCTTTTCCt                                                                                                               <  1:276680/140‑1 (MQ=255)

                      aCGGTAAGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTAGGCCGGATAAGGCGTAGACGCATCCGGAAAAAGCCGCCTCATACTCTTTTCCt                                                                                                               <  1:523849/140‑1 (MQ=255)

                      aCGGTAAGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTAGGCCGGATAAGGCGTAGACGCATCCGGAAAAAGCCGCCTCATACTCTTTTCCt                                                                                                               >  2:596605/1‑140 (MQ=255)

                      aCGGTAAGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTAGGCCGGATAAGGCGTAGACGCATCCGGAAAAAGCCGCCTCATACTCTTTTCCt                                                                                                               >  2:907711/1‑140 (MQ=255)

                        ggTAAGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTAGGCCGGATAAGGCGTAGACGCATCCGGAAAAAGCCGCCTCATActc                                                                                                                      <  2:752197/131‑1 (MQ=255)

                        ggTAAGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTAGGCCGGATAAGGCGTAGACGCATCCGGAAAAAGCCGCCTCATActc                                                                                                                      >  1:752197/1‑131 (MQ=255)

                        ggTAAGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTAGGCCGGATAAGGCGTAGACGCATCCGGAAAAAGCCGCCTCATACTCTTTTCCTCg                                                                                                             <  2:255811/140‑1 (MQ=255)

                          tAAGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTAGGCCGGATAAGGCGTAGACGCATCCGGAAAAAGCCGCCTCATACTCTTTTCCTCggg                                                                                                           <  1:109059/140‑1 (MQ=255)

                             gagCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTCCCCGTAGGCCGGATAAGGCGTAGACGCATCCGGAAAAAGCCGCCTCATACTCTTTTCCTCGGTAgg                                                                                                        <  2:953833/140‑1 (MQ=255)

                                 gcCAGCAGCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTAGGCCGGATAAGGCGTAGACGCATCCGGAAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTAc                                                                                                    >  1:1038384/1‑140 (MQ=255)

                                                   agATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTAGGCCGGATAAGGCGTAGACGCATCCGGAAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGCACAAGa                                                                                  >  1:903927/1‑140 (MQ=255)

                                                   agATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTAGGCCGGATAAGGCGTAGACGCATCCGGAAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGCACAAGa                                                                                  >  2:242476/1‑140 (MQ=255)

                                                    gATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTAGGCCGGATAAGGCGTAGACGCATCCGGAAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGcaca                                                                                     >  1:748178/1‑136 (MQ=255)

                                                    gATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTAGGCCGGATAAGGCGTAGACGCATCCGGAAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGcaca                                                                                     <  2:748178/136‑1 (MQ=255)

                                                      tGCTTTACGCCTGCTGCGCTGCCCTTATCAGGCCTACGAGACGTATCTACCCGTAGGCCGGATAAGGCGTAGACGCATCCGGAAAAAGTCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGCACAAGAAat                                                                               >  2:127186/1‑140 (MQ=255)

                                                      tGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTAGGCCGGATAAGGCGTAGACGCATCCGGAAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGCACAAGAAat                                                                               >  2:1219348/1‑140 (MQ=255)

                                                              gCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTAGGCCGGATAAGGCGTAGACGCATCCGGAAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGCACAAGAAATTATTCGTa                                                                       >  1:757684/1‑140 (MQ=255)

                                                                      tctacgcctTATCCGGCCTACGAGACGTATCTACCCGTAGGCCGGATAAGGCGTAGACGCATCCGGAAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGCACAAGAAATTATTCGTAAAAAACGt                                                               >  2:886337/8‑140 (MQ=255)

                                                                        ctgcgctTATCAGGCCTACGAGACGTATCTACCCGTAGGCCGGATAAGGCGTAGACGCATCCGGAAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGCACAAGAAATTATTCGTAAAAAACGTGa                                                             >  2:656595/1‑140 (MQ=255)

                                                                        ctgcgctTATCAGGCCTACGAGACGTATCTACCCGTAGGCCGGATAAGGCGTAGACGCATCCGGAAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGCACAAGAAATTATTCGTAAAAAACGTGa                                                             <  2:194531/140‑1 (MQ=255)

                                                                           cgctTATCAGGCCTACGAGACGTATCTACCCGTAGGCCGGATAAGGCGTAGACGCATCCGGAAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGCACAAGAAATTATTCGTAAAAAACGTGATgg                                                          >  1:825507/1‑140 (MQ=255)

                                                                             ctTATCAGGCCTACGAGACGTATCTACCCGTAGGCCGGATAAGGCGTAGACGCATCCGGAAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGCACAAGAAATTATTCGTAAAAAACGTGATGGTc                                                        <  1:907711/140‑1 (MQ=255)

                                                                                  cAGGCCTACGAGACGTATCTACCCGTAGGCCGGATAAGGCGTAGACGCATCCGGAAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGCACAAGAAATTATTCGTAAAAAACGTGATGGTCATgcg                                                   <  1:1043908/140‑1 (MQ=255)

                                                                                     gCCTACGAGACGTATCTACCCGTAGGCCGGATAAGGCGTAGACGCATCCGGAAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGCACAAGAAATTATTCGTAAAAAACGTGATGGTCATGCGCTg                                                >  1:575048/1‑140 (MQ=255)

                                                                                       cTACGAGACGTATCTACCCGTAGGCCGGATAAGGCGTAGACGCATCCGGAAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGCACAAGAAATTATTCGTAAAAAACGTGATGGTCATGCGCTGAg                                              <  1:1080894/140‑1 (MQ=255)

                                                                                        tACGAGACGTATCTACCCGTAGGCCGGATAAGGCGTAGACGCATCCGGAAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGCACAAGAAATTATTCGTAAAAAACGTGATGGTCATGCGCTGAGc                                             >  2:122178/1‑140 (MQ=255)

                                                                                               cGTATCTACCCGTAGGCCGGATAAGGCGTAGACGCATCCGGAAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGCACAAGAAATTATTCGTAAAAAACGTGATGGTCATGCGCTGAGCGATgaag                                      <  2:3866/140‑1 (MQ=255)

                                                                                               cGTATCTACCCGTAGGCCGGATAAGGCGTAGACGCATCCGGAAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGCACAAGAAATTATTCGTAAAAAACGTGATGGTCATGCGCTGAGCGATgaag                                      >  1:36136/1‑140 (MQ=255)

                                                                                               cGTATCTACCCGTAGGCCGGATAAGGCGTAGACGCATCCGGAAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGCACAAGAAATTATTCGTAAAAAACGTGATGGTCATGCGCTGAGCGATgaag                                      >  1:1021122/1‑140 (MQ=255)

                                                                                                       cccGTAGGCCGGATAAGGCGTAGACGCATCCGGAAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGCACAAGAAATTATTCGTAAAAAACGTGATGGTCATGCGCTGAGCGATGAAGAAATTCGt                              >  2:128630/1‑140 (MQ=255)

                                                                                                       cccGTAGGCCGGATAAGGCGTAGACGCATCCGGAAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGCACAAGAAATTATTCGTAAAAAACGTGATGGTCATGCGCTGAGCGATGAAGAAATTCGt                              <  1:596605/140‑1 (MQ=255)

                                                                                                       cccGTAGGCCGGATAAGGCGTAGACGCATCCGGAAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGCACAAGAAATTATTCGTAAAAAACGTGATGGTCATGCGCTGAGCGATGAAGAAATTCGt                              <  1:1219348/140‑1 (MQ=255)

                                                                                                        ccGTAGGCCGGATAAGGCGTAGACGCATCCGGAAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGCACAAGAAATTATTCGTAAAAAACGTGATGGTCATGCGCTGAGCGATGAAGAAATTCg                               <  1:60040/138‑1 (MQ=255)

                                                                                                        ccGTAGGCCGGATAAGGCGTAGACGCATCCGGAAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGCACAAGAAATTATTCGTAAAAAACGTGATGGTCATGCGCTGAGCGATGAAGAAATTCg                               >  2:60040/1‑138 (MQ=255)

                                                                                                         cGTAGGCCGGATAAGGCGTAGACGCATCCGGAAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGCACAAGAAATTATTCGTAAAAAACGTGATGGTCATGCGCTGAGCGATGAAGAAATTCGttt                            >  1:265863/1‑140 (MQ=255)

                                                                                                          gTAGGCCGGATAAGGCGTAGACGCATCCGGAAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGCACAAGAAATTATTCGTAAAAAACGTGATGGTCATGCGCTGAGCGATGAAGAAATTCGTTTc                           <  2:903927/140‑1 (MQ=255)

                                                                                                          gTAGGCCGGATAAGGCGTAGACGCATCCGGAAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGCACAAGAAATTATTCGTAAAAAACGTGATGGTCATGCGCTGAGCGATGAAGAAATTCGTTTc                           <  2:575048/140‑1 (MQ=255)

                                                                                                           tAGGCCGGATAAGGCGTAGACGCATCCGGAAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGCACAAGAAATTATTCGTAAAAAACGTGATGGTCATGCGCTGAGCGATGAAGAAATTCGTTTCt                          >  2:177899/1‑140 (MQ=255)

                                                                                                            aGGCCGGATAAGGCGTAGACGCATCCAGAAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGCACAAGAAATTATTCGTAAAAAACGTGATGGTCATGCGCTGAGCGa                                           <  1:63888/122‑1 (MQ=255)

                                                                                                            aGGCCGGATAAGGCGTAGACGCATCCAGAAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGCACAAGAAATTATTCGTAAAAAACGTGATGGTCATGCGCTGAGCGa                                           >  2:63888/1‑122 (MQ=255)

                                                                                                             ggCCGGATAAGGCGTAGACGCATCCGGAAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGCACAAGAAATTATTCGTAAAAAACGTGATGGTCATGCGCTGAGCGATGAAGAAATTCGTTTCttt                        >  1:570648/1‑140 (MQ=255)

                                                                                                               ccGGATAAGGCGTAGACGCATCCGGAAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGCACAAGAAATTATTCGTAAAAAACGTGATGGTCATGCGCTGAGCGATGAAGAAATTCGTTTCTTTAt                      <  2:757684/140‑1 (MQ=255)

                                                                                                                  gATAAGGCGTAGACGCATCCGGAAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGCACAAGAAATTATTCGTAAAAAACGTGATGGTCATGCGCTGAGCGATGAAGAAATTCGTTTCTTTATCaa                   >  1:34446/1‑140 (MQ=255)

                                                                                                                         cGTAGACGCATCCGGAAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGCACAAGAAATTATTCGTAAAAAACGTGATGGTCATGCGCTGAGCGATGAAGAAATTCGTTTCTTTATCAACGGTAtt            >  1:310968/1‑140 (MQ=255)

                                                                                                                               cGCATCCGGAAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGCACAAGAAATTATTCGTAAAAAACGTGATGGTCATGCGCTGAGCGATGAAGAAATTCGTTTCTTTATCAACGGTATTCGCGac      <  2:310968/140‑1 (MQ=255)

                                                                                                                                  aTCCGGAAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGCACAAGAAATTATTCGTAAAAAACGTGATGGTCATGCGCTGAGCGATGAAGAAATTCGTTTCTTTATCAACGGTATTCGCGacaac   >  2:496679/1‑140 (MQ=255)

                                                                                                                                  aTCCGGAAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGCACAAGAAATTATTCGTAAAAAACGTGATGGTCATGCGCTGAGCGATGAAGAAATTCGTTTCTTTATCAACGGTATTCGCGacaac   >  2:116160/1‑140 (MQ=255)

                                                                                                                                  aTCCGGAAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGCACAAGAAATTATTCGTAAAAAACGTGATGGTCATGCGCTGAGCGATGAAGAAATTCGTTTCTTTATCAACGGTATTCGCGac      <  2:534992/137‑1 (MQ=255)

                                                                                                                                  aTCCGGAAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGCACAAGAAATTATTCGTAAAAAACGTGATGGTCATGCGCTGAGCGATGAAGAAATTCGTTTCTTTATCAACGGTATTCGCGac      >  1:534992/1‑137 (MQ=255)

                                                                                                                                   tCCGGAAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGCACAAGAAATTATTCGTAAAAAACGTGATGGTCATGCGCTGAGCGATGAAGAAATTCGTTTCTTTATCAACGGTATTCGCGacaaca  <  2:1038384/140‑1 (MQ=255)

CTGAAAGCGCTGGGTCACGGCGACGGTAAGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTAGGCCGGATAAGGCGTAGACGCATCCGGCAAAAGCCGCCTCATACTCTTTTCCTCGGGAGGTTACCTTGTTTCTCGCACAAGAAATTATTCGTAAAAAACGTGATGGTCATGCGCTGAGCGATGAAGAAATTCGTTTCTTTATCAACGGTATTCGCGACAACA  >  NC_000913/4618055‑4618325

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A