mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 79,171 | C→A | D95Y (GAC→TAC) | leuD ← | 3‑isopropylmalate dehydratase subunit LeuD |
| RA | 175,412 | G→T | P102P (CCG→CCT) | clcA → | chloride:H(+) antiporter ClcA |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 285,577 | G→T | P61P (CCG→CCT) | yagG → | putative D‑xylonate transporter YagG |
| RA | 299,332 | C→A | G535W (GGG→TGG) | paoC ← | aldehyde dehydrogenase: molybdenum cofactor‑binding subunit |
| RA | 751,341 | T→G | N277H (AAT→CAT) | ybgQ ← | putative fimbrial usher protein YbgQ |
| RA | 889,923 | A→G | intergenic (‑104/‑166) | ybjL ← / → ybjM | putative transport protein YbjL/putative inner membrane protein |
| RA | 1,126,617 | G→T | R154L (CGC→CTC) | yceH → | DUF480 domain‑containing protein YceH |
| MC JC | 1,299,499 | Δ1,199 bp | insH21 | insH21 | |
| RA | 1,678,604 | G→T | A60S (GCA→TCA) | ydgH → | DUF1471 domain‑containing protein YdgH |
| RA | 1,705,169 | A→C | intergenic (+5/‑81) | cnu → / → ydgK | H‑NS‑ and StpA‑binding protein/conserved inner membrane protein YdgK |
| RA | 1,746,461 | A→G | noncoding (27/77 nt) | valV → | tRNA‑Val |
| JC JC | 1,879,829 | Δ1 bp :: IS186 (–) +6 bp :: Δ1 bp | coding (115‑120/360 nt) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| MC JC | 1,978,503 | Δ776 bp | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| RA | 1,979,551 | C→A | intergenic (‑336/‑202) | insA‑5 ← / → uspC | IS1 protein InsA/universal stress protein C |
| RA | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 2,222,536 | G→T | A118S (GCC→TCC) | dld → | D‑lactate dehydrogenase |
| RA | 2,304,259 | G→T | A119S (GCG→TCG) | eco → | serine protease inhibitor ecotin |
| RA | 2,552,129 | G→T | R4S (CGC→AGC) | ypeA ← | putative acetyltransferase YpeA |
| RA | 3,220,829 | C→A | R446S (CGT→AGT) | patA → | putrescine aminotransferase |
| RA | 3,354,487 | C→T | intergenic (‑437/‑238) | yhcC ← / → gltB | radical SAM family oxidoreductase YhcC/glutamate synthase subunit GltB |
| RA | 3,560,455 | +G | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| RA | 3,859,407 | C→A | G237V (GGC→GTC) | yidK ← | putative transporter YidK |
| RA | 3,946,923 | G→T | noncoding (52/77 nt) | aspT → | tRNA‑Asp |
| RA | 3,983,659 | C→A | P234P (CCC→CCA) | aslB → | putative anaerobic sulfatase maturation enzyme AslB |
| RA | 4,261,710 | C→A | S14R (AGC→AGA) | dusA → | tRNA‑dihydrouridine synthase A |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,618,191 | C→A | intergenic (+89/‑38) | deoC → / → deoA | deoxyribose‑phosphate aldolase/thymidine phosphorylase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3102957 | 3104051 | 1095 | 18 [17] | [14] 19 | [mutY] | [mutY] |
| * | * | ÷ | NC_000913 | 3423770–3424234 | 3424530–3424240 | 7–761 | 18 [14] | [17] 19 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 16 (0.220) | 77 (1.200) | 47/244 | 0.2 | 84.1% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 15 (0.230) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1207805 | 16 (0.220) | 52 (0.810) | 40/244 | 0.4 | 78.1% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 15 (0.230) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | 3363001 = | 113 (1.550) | 115 (1.590) | 54/274 | 0.2 | 66.8% | coding (195/2382 nt) | yhcD | putative fimbrial usher protein YhcD |
| ? | NC_000913 | 3766087 = | 2 (0.030) | coding (3905/4134 nt) | rhsA | rhs element protein RhsA | |||||
| * | ? | NC_000913 | = 3653230 | NA (NA) | 82 (1.130) | 54/276 | 0.2 | 96.5% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3766089 | 3 (0.040) | coding (3907/4134 nt) | rhsA | rhs element protein RhsA | |||||