Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A3 F73 I1 R1 27 139.9 4778260 99.2% 4740033 138.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,065,747 (C)6→5 coding (18/546 nt) cobU ← cobinamide‑P guanylyltransferase/cobinamide kinase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,065,7420C.100.0% 778.6 / NA 180coding (23/546 nt)cobUcobinamide‑P guanylyltransferase/cobinamide kinase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base . (77/103);  total (77/103)

Only 100 of 201 total aligned reads displayed.

GTGCTCCGGGCGGCCTTGCCGATGATGTTCTATCCGTGCAGCCATCTCATCATCAAGGATTTGCGAGGTAGCGATATACAGAACCTGTGAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCGCCCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTATGATGGTATTCATTGAACAGAACAATGGATCCCCCACCGTTGCTGACCGCAAAACATTTACGCGATTAATACTGCGCGTAATATAATTAAA  >  NC_000913/2065603‑2065877
                                                                                                                                           |                                                                                                                                       
gTGCTCCGGGCGGCCTTGCCGATGATGTTCTATCCGTGCAGCCATCTCATCATCAAGGATTTGCGAGGTAGCGATATACAGAACCTGTGAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTgcgc                                                                                                                                         >  1:1049542/1‑140 (MQ=255)
gTGCTCCGGGCGGCCTTGCCGATGATGTTCTATCCGTGCAGCCATCTCATCATCAAGGATTTGCGAGGTAGCGATATACAGAACCTGTGAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTgcgc                                                                                                                                         >  2:805314/1‑140 (MQ=255)
gTGCTCCGGGCGGCCTTGCCGATGATGTTCTATCCGTGCAGCCATCTCATCATCAAGGATTTGCGAGGTAGCGATATACAGAACCTGTGAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTgcgc                                                                                                                                         >  2:800729/1‑140 (MQ=255)
 tGCTCCGGGCGGCCTTGCCGATGATGTTCTATCCGTGCAGCCATCTCATCATCAAGGATTTGCGAGGTAGCGATATACAGAACCTGTGAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCGcc                                                                                                                                        >  2:61711/1‑140 (MQ=255)
   cTCCGGGCGGCCTTGCCGATGATGTTCTATCCGTGCAGCCATCTCATCATCAAGGATTTGCGAGGTAGCGATATACAGAACCTGTGAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCGcccc                                                                                                                                      >  2:107573/1‑140 (MQ=255)
   cTCCGGGCGGCCTTGCCGATGATGTTCTATCCGTGCAGCCATCTCATCATCAAGGATTTGCGAGGTAGCGATATACAGAACCTGTGAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCGcccc                                                                                                                                      >  2:351638/1‑140 (MQ=255)
     ccGGGCGGCCTTGCCGATGATGTTCTATCCGTGCAGCCATCTCATCATCAAGGATTTGCGAGGTAGCGATATACAGAACCTGTGAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCGcccccg                                                                                                                                    <  1:311091/140‑2 (MQ=255)
        ggcggcCTTGCCGATGATGTTCTATCCGTGCAGCCATCTCATCATCAAGGATTTGCGAGGTAGCGATATACAGAACCTGTGAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCGcccccgtca                                                                                                                                 >  1:426848/1‑136 (MQ=255)
        ggcggcCTTGCCGATGATGTTCTATCCGTGCAGCCATCTCATCATCAAGGATTTGCGAGGTAGCGATATACAGAACCTGTGAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCGcccccgtca                                                                                                                                 >  2:1117654/1‑136 (MQ=255)
        ggcggcCTTGCCGATGATGTTCTATCCGTGCAGCCATCTCATCATCAAGGATTTGCGAGGTAGCGATATACAGAACCTGTGAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCGcccccgtca                                                                                                                                 >  2:1979111/1‑136 (MQ=255)
        ggcggcCTTGCCGATGATGTTCTATCCGTGCAGCCATCTCATCATCAAGGATTTGCGAGGTAGCGATATACAGAACCTGTGAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCGcccccgtca                                                                                                                                 >  1:1534614/1‑136 (MQ=255)
             ccTTGCCGATGATGTTCTATCCGTGCAGCCATCTCATCATCAAGGATTTGCGAGGTAGCGATATACAGAACCTGTGAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCaaa                                                                                                                           >  2:2298588/1‑140 (MQ=255)
                  ccGATGATGTTCTATCCGTGCAGCCATCTCATTATCAAGGATTTGCGAGGTAGCGATATACAGAACCTGTGAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAatcat                                                                                                                      <  2:1728476/140‑1 (MQ=255)
                      tgatgTTCTATCCGTGCAGCCATCTCATCATCAAGGATTTGCGAGGTAGCGATATACAGAACCTGTGAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATa                                                                                                                  <  1:1797720/140‑1 (MQ=255)
                       gatgTTCTATCCGTGCAGCCATCTCATCATCAAGGATTTGCGAGGTAGCGATATACAGAACCTGTGAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATAc                                                                                                                 >  1:1741589/1‑140 (MQ=255)
                              tATCCGTGCAGCCGTCTCATCATCAAGGTTTTGCGAGGTAGCGATATACAGAACCTGTGAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTcc                                                                                                          <  2:1360160/140‑1 (MQ=255)
                              tATCCGTGCAGCCATCTCATCATCAAGGATTTGCGAGGTAGCGATATACAGAACCTGTGAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTcc                                                                                                          <  2:379740/140‑1 (MQ=255)
                                tCCGTGCAGCCATCTCATCATCAAGGATTTGCGAGGTAGCGATATACAGAACCTGTGAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTg                                                                                                        >  1:801140/1‑140 (MQ=255)
                                tCCGTGCAGCCATCTCATCATCAAGGATTTGCGAGGTAGCGATATACAGAACCTGTGAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTg                                                                                                        >  2:1242112/1‑140 (MQ=255)
                                   gTGCAGCCATCTCATCATCAAGGATTTGCGAGGTAGCGATATACAGAACCTGTGAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGAtt                                                                                                     >  1:2146745/1‑140 (MQ=255)
                                   gTGCAGCCATCTCATCATCAAGGATTTGCGAGGTAGCGATATACAGAACCTGTGAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGAtt                                                                                                     >  1:1865605/1‑140 (MQ=255)
                                    tGCAGCCATCTCATCATCAAGGATTTGCGAGGTAGCGATATACAGAACCTGTGAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGa                                                                                                              <  2:1799427/130‑1 (MQ=255)
                                    tGCAGCCATCTCATCATCAAGGATTTGCGAGGTAGCGATATACAGAACCTGTGAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTc                                                                                                    <  2:2348261/140‑1 (MQ=255)
                                    tGCAGCCATCTCATCATCAAGGATTTGCGAGGTAGCGATATACAGAACCTGTGAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTc                                                                                                    >  1:1350154/1‑140 (MQ=255)
                                    tGCAGCCATCTCATCATCAAGGATTTGCGAGGTAGCGATATACAGAACCTGTGAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTc                                                                                                    >  2:1717428/1‑140 (MQ=255)
                                    tGCAGCCATCTCATCATCAAGGATTTGCGAGGTAGCGATATACAGAACCTGTGAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTc                                                                                                    >  1:1504568/1‑140 (MQ=255)
                                     gCAGCCATCTCATCATCAAGGATTTGCGAGGTAGCGATATACAGAACCTGTGAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCa                                                                                                   >  2:759969/1‑140 (MQ=255)
                                      cAGCCATCTCATCATCAAGGATTTGCGAGGTAGCGATATACAGAACCTGTGAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCaa                                                                                                  >  1:1482596/1‑140 (MQ=255)
                                      cAGCCATCTCATCATCAAGGATTTGCGAGGTAGCGATATACAGAACCTGTGAAGAGTCACCAATAAGCGCCTCTGCGTGGCGTCTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCaa                                                                                                  <  2:2192918/140‑1 (MQ=255)
                                          cATCTCATCATCAAGGATTTGCGAGGTAGCGATATACAGAACCTGTGAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGt                                                                                              >  1:1009254/1‑140 (MQ=255)
                                           aTCTCATCATCAAGGATTTGCGAGGTAGCGATATACAGAACCTGTGAAGAGTCCCCAATAAGCGCCTCTGTGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTa                                                                                             <  1:1962913/140‑1 (MQ=255)
                                           aTCTCATCATCAAGGATTTGCGAGGTAGCGATATACAGAACCTGTGAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTa                                                                                             <  2:1343202/140‑1 (MQ=255)
                                           aTCTCATCATCAAGGATTTGCGAGGTAGCGATATACAGAACCTGTGAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTa                                                                                             <  2:1049542/140‑1 (MQ=255)
                                           aTCTCATCATCAAGGATTTGCGAGGTAGCGATATACAGAACCTGTGAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTa                                                                                             <  1:964959/140‑1 (MQ=255)
                                             ctcATCATCAAGGATTTGCGAGGTAGCGATATACAGAACCTGTGAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTatg                                                                                           <  2:2146745/140‑1 (MQ=255)
                                              tcatcatcaAGGATTTGCGAGGTAGCGATATACAGAACCTGTGAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTcc                                                                                                          >  2:851222/1‑124 (MQ=255)
                                              tcatcatcaAGGATTTGCGAGGTAGCGATATACAGAACCTGTGAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTcc                                                                                                          <  1:851222/124‑1 (MQ=255)
                                               catcatcaAGGATTTGCGAGGTAGCGATATACAGAACCTGTGAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTatgat                                                                                         <  1:1979111/140‑1 (MQ=255)
                                                  catcaAGGATTTGCGAGGTAGCGATATACAGAACCTGTGAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTATGATGGt                                                                                      <  2:897679/140‑1 (MQ=255)
                                                  catcaAGGATTTGCGAGGTAGCGATATACAGAACCTGTGAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTATGATGGt                                                                                      <  1:506767/140‑1 (MQ=255)
                                                   atcaAGGATTTGCGAGGTAGCGATATACAGAACCTGTGAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTATGATGGTa                                                                                     >  2:1658385/1‑140 (MQ=255)
                                                    tcaAGGATTTGCGAGGTAGCGATATACAGAACCTGTGAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTATGATGGTAt                                                                                    <  2:1783008/140‑1 (MQ=255)
                                                       aGGATTTGCGAGGTAGCGATATACAGAACCTGTGAAGAGTCCCCAATAAGCGCCTCTGCGTGGTGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTATGATGGTATTCa                                                                                 <  2:1609719/140‑1 (MQ=255)
                                                       aGGATTTGCGAGGTAGCGATATACAGAACCTGTGAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTATGATGGTATTCa                                                                                 <  1:2298588/140‑1 (MQ=255)
                                                       aGGATTTGCGAGGTAGCGATATACAGAACCTGTGAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTATGATGGTATTCa                                                                                 <  2:1865605/140‑1 (MQ=255)
                                                       aGGATTTGCGAGGTAGCGATATACAGAACCTGTGAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTATGATGGTATTCa                                                                                 <  2:100075/140‑1 (MQ=255)
                                                        ggATTTGCGAGGTAGCGATATACAGAACCTGTGAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTa                                                                                             <  2:1429784/127‑1 (MQ=255)
                                                        ggATTTGCGAGGTAGCGATATACAGAACCTGTGAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTATGATGGt                                                                                      <  1:558448/134‑1 (MQ=255)
                                                        ggATTTGCGAGGTAGCGATATACAGAACCTGTGAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTATGATGGt                                                                                      >  2:558448/1‑134 (MQ=255)
                                                        ggATTTGCGAGGTAGCGATATACAGAACCTGTGAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTATGATGGTATTCAt                                                                                >  1:2173038/1‑140 (MQ=255)
                                                          aTTTGCGAGGTAGCGATATACAGAACCTGTGAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTATGATGGTATTCATTg                                                                              >  2:1381447/1‑140 (MQ=255)
                                                            ttGCGAGGTAGCGATATACAGAACCTGTGAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTATGATGGTATTCATTgaa                                                                            <  2:441646/140‑1 (MQ=255)
                                                            ttGCGAGGTAGCGATATACAGAACCTGTGAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTATGATGGTATTCATTgaa                                                                            <  1:1381447/140‑1 (MQ=255)
                                                              gCGAGGTAGCGATATACAGAACCTGTGAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTATGATGGTATTCATTgaaca                                                                          <  1:759969/140‑1 (MQ=255)
                                                               cGAGGTAGCGATATACAGAACCTGTGAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTATGATGGTATTCATTgaacag                                                                         <  1:107573/140‑1 (MQ=255)
                                                                  ggTAGCGATATACAGAACCTGTGAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTATGATGGTATTCATTgaacagaac                                                                      <  1:1514166/140‑1 (MQ=255)
                                                                      gCGATATACAGAACCTGTGAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTATGATGGTATTCATTGAACAGAACAATg                                                                  <  2:685194/140‑1 (MQ=255)
                                                                        gATATACAGAACCTGTGAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTATGATGGTATTCATTGAACAGAACAATGGa                                                                <  2:1009254/140‑1 (MQ=255)
                                                                             aCAGAACCTGTGAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGTCTCCTGATTCAAATGTATGATGGTATTCATTGAACAGAACAATGGATcccc                                                           <  1:942845/140‑1 (MQ=255)
                                                                             aCAGAACCTGTGAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTATGATGGTATTCATTGAACAGAACAATGGATcccc                                                           <  1:1620136/140‑1 (MQ=255)
                                                                              cAGAACCTGTGAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTATGATGGTATTCATTGAACAGAACAATGGATccccc                                                          >  2:2007144/1‑140 (MQ=255)
                                                                               aGAACCTGTGAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTATGATGGTATTCATTGAACAGAACAATGGATCCCCCa                                                         <  2:1032647/140‑1 (MQ=255)
                                                                                 aaCCTGTGAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTATGATGGTATTCATTGAACAGAACAATGGATCCCCCAcc                                                       >  1:1708822/1‑140 (MQ=255)
                                                                                 aaCCTGTGAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTATGATGGTATTCATTGAACAGAACAATGGATCCCCCAcc                                                       >  2:1524952/1‑140 (MQ=255)
                                                                                 aaCCTGTGAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTATGATGGTATTCATTGAACAGAACAATGGATCCCCCAcc                                                       >  2:1706354/1‑140 (MQ=255)
                                                                                      gtgAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTATGATGGTATTCATTGAACAGAACAATGGATCCCCCACCGTTGc                                                  >  1:609332/1‑140 (MQ=255)
                                                                                      gtgAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTATGATGGTATTCATTGAACAGAACAATGGATCCCCCACCGTTGc                                                  >  1:1804513/1‑140 (MQ=255)
                                                                                      gtgAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTATGATGGTATTCATTGAACAGAACAATGGATCCCCCACCGTTGc                                                  >  1:1431063/1‑140 (MQ=255)
                                                                                      gtgAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTATGATGGTATTCATTGAACAGAACAATGGATCCCCCACCGTTGc                                                  >  1:634271/1‑140 (MQ=255)
                                                                                         aaGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTATGATGGTATTCATTGAACAGAACAATGGATCCCCCACCGTTGCTGa                                               >  1:1826473/1‑140 (MQ=255)
                                                                                          agagTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTATGATGGTATTCATTGAACAGAACAATGGATCCCCCACCGTTGCTGAc                                              <  1:110341/140‑1 (MQ=255)
                                                                                             gTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTATGATGGTATTCATTGAACAGAACAATGGATCCCCCACCGTTGCTGACCGc                                           >  2:1149659/1‑140 (MQ=255)
                                                                                              tCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTATGATGGTATTCATTGAACAGAACAATGGATCCCCCACCGTTGCTGACCGCa                                          >  1:1134807/1‑140 (MQ=255)
                                                                                              tCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTATGATGGTATTCATTGAACAGAACAATGGATCCCCCACCGTTGCTGACCGCa                                          >  2:456260/1‑140 (MQ=255)
                                                                                              tCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTATGATGGTATTCATTGAACAGAACAATGGATCCCCCACCGTTGCTGACCGCa                                          <  1:451565/140‑1 (MQ=255)
                                                                                              tCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTATGATGGTATTCATTGAACAGAACAATGGATCCCCCACCGTTGCTGACCGCa                                          >  2:232326/1‑140 (MQ=255)
                                                                                              tCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTATGATGGTATTCATTGAACAGAACAATGGATCCCCCACCGTTGCTGACCGCa                                          >  1:1844440/1‑140 (MQ=255)
                                                                                               ccccAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTATGATGGTATTCATTGAACAGAACAATGGATCCCCCACCGTTGCTGACCGCaa                                         >  2:209089/1‑140 (MQ=255)
                                                                                                        gcgcCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTATGATGGTATTCATTGAACAGAACAATGGATCCCCCACCGTTGCTGACCGCAAAACATTTAc                                <  2:304310/140‑1 (MQ=255)
                                                                                                        gcgcCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTATGATGGTATTCATTGAACAGAACAATGGATCCCCCACCGTTGCTGACCGCAAAACATTTAc                                <  1:1149659/140‑1 (MQ=255)
                                                                                                        gcgcCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTATGATGGTATTCATTGAACAGAACAATGGATCCCCCACCGTTGCTGACCGCAAAACATTTAc                                >  1:462494/1‑140 (MQ=255)
                                                                                                        gcgcCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTATGATGGTATTCATTGAACAGAACAATGGATCCCCCACCGTTGCTGACCGCAAAACATTTAc                                <  2:431282/140‑1 (MQ=255)
                                                                                                        gcgcCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTATGATGGTATTCATTGAACAGAACAATGGATCCCCCACCGTTGCTGACCGCAAAACATTTAc                                <  1:351638/140‑1 (MQ=255)
                                                                                                        gcgcCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTATGATGGTATTCATTGAACAGAACAATGGATCCCCCACCGTTGCTGACCGCAAAACATTTAc                                <  2:322523/140‑1 (MQ=255)
                                                                                                        gcgcCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTATGATGGTATTCATTGAACAGAACAATGGATCCCCCACCGTTGCTGACCGCAAAACATTTAc                                <  1:1675658/140‑1 (MQ=255)
                                                                                                        gcgcCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTATGATGGTATTCATTGAACAGAACAATGGATCCCCCACCGTTGCTCACCGCAAAACATTTAc                                <  2:1504568/140‑1 (MQ=255)
                                                                                                          gcCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTATGATGGTATTCATTGAACAGAACAATGGATCCCCCACCGTTGCTGACCGCAAAACATTTAc                                <  1:875430/138‑1 (MQ=255)
                                                                                                          gcCTCTGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTATGATGGTATTCATTGAACAGAACAATGGATCCCCCACCGTTGCTGACCGCAAAACATTTAc                                >  2:875430/1‑138 (MQ=255)
                                                                                                             tctGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTATGATGGTATTCATTGAACAGAACAATGGATCCCCCACCGTTGCTGACCGCAAAACATTTACGCGAt                           <  2:1741589/140‑1 (MQ=255)
                                                                                                             tctGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTATGATGGTATTCATTGAACAGAACAATGGATCCCCCACCGTTGCTGACCGCAAAACATTTACGCGAt                           <  1:62505/140‑1 (MQ=255)
                                                                                                               tGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTATGATGGTATTCATTGAACAGAACAATGGATCCCCCACCGTTGCTGACCGCAAAACATTTAc                                >  2:253993/1‑133 (MQ=255)
                                                                                                               tGCGTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTATGATGGTATTCATTGAACAGAACAATGGATCCCCCACCGTTGCTGACCGCAAAACATTTAc                                <  1:253993/133‑1 (MQ=255)
                                                                                                                  gTGGCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTATGATGGTATTCATTGAACAGAACAATGGATCCCCCACCGTTGCTGACCGCAAAACATTTACGCGATTAATa                      <  1:1717428/140‑1 (MQ=255)
                                                                                                                    ggCGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTATGATGGTATTCATTGAACAGAACAATGGATCCCCCACCGTTGCTGACCGCAAAACATTTACGCGATTAATACt                    <  1:2007144/140‑1 (MQ=255)
                                                                                                                      cGACTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTATGATGGTATTCATTGAACAGAACAATGGATCCCCCACCGTTGCTGACCGCAAAACATTTACGCGATTAATACTgc                  >  1:2043308/1‑140 (MQ=255)
                                                                                                                        aCTCTTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTATGATGGTATTCATTGAACAGAACAATGGATCCCCCACCGTTGCTGACCGCAAAACATTTACGCGATTAATACTgcgc                >  2:1812923/1‑140 (MQ=255)
                                                                                                                           ctTCCCGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTATGATGGTATTCATTGAACAGAACAATGGATCCCCCACCGTTGCTGACCGCAAAACATTTACGCGATTAATACTGCGCGTa             <  2:1134807/140‑1 (MQ=255)
                                                                                                                                cGCTCCGTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTATGATGGTATTCATTGAACAGAACAATGGATCCCCCACCGTTGCTGACCGCAAAACATTTACGCGATTAATACt                    >  1:1735887/1‑128 (MQ=255)
                                                                                                                                      gTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTATGATGGTATTCATTGAACAGAACAATGGATCCCCCACCGTTGCTGACCGCAAAACATTTACGCGATTAATACTGCGCGTAATATAATTaaa  >  1:65392/1‑140 (MQ=255)
                                                                                                                                      gTGCG‑CCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTATGATGGTATTCATTGAACAGAACAATGGATCCCCCACCGTTGCTGACCGCAAAACATTTACGCGATTAATACTGCGCGTAATATAATTaaa  >  1:121425/1‑140 (MQ=255)
                                                                                                                                           |                                                                                                                                       
GTGCTCCGGGCGGCCTTGCCGATGATGTTCTATCCGTGCAGCCATCTCATCATCAAGGATTTGCGAGGTAGCGATATACAGAACCTGTGAAGAGTCCCCAATAAGCGCCTCTGCGTGGCGACTCTTCCCGCTCCGTGCGCCCCCCGTCACCAAAATCATCATACCGACTCCTGATTCAAATGTATGATGGTATTCATTGAACAGAACAATGGATCCCCCACCGTTGCTGACCGCAAAACATTTACGCGATTAATACTGCGCGTAATATAATTAAA  >  NC_000913/2065603‑2065877

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A