Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A3 F73 I1 R1	27	139.9	4778260	99.2%	4740033	138.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,995,589	C→A	pseudogene (432/707 nt)	ygeN ←	putative type III secretion system protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,995,589	0	C	A	100.0%	427.4 / NA	121	pseudogene (432/707 nt)	ygeN	putative type III secretion system protein
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (59/62); total (59/62)

Only 100 of 125 total aligned reads displayed.

AATATTGCTCACAATTATCCACAAATTCCTGCGGACTAAATTCAGCAATAAATTGATCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTCTACTTCAAGAGACTTATCTTTGAAACTGGTAGGTATATGGAGATTTACAGGACCTGATATTGATGGTAATTTTGTTACCCAACTTTCAAAAATTTTGATAAAAACATCAACTTCTTCTGAAGGTTTTAACAATATA  >  NC_000913/2995454‑2995725

aaTATTGCTCACAATTATCCACAAATTCCTGCGGACTAAATTCAGCAATAAATTGATCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACt                                                                                                                                      >  1:1101604/1‑140 (MQ=255)

   atTGCTCACAATTATCCACAAATTCCTGCGGACTAAATTCAGCAATAAATTGATCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCa                                                                                                                                   <  1:1087950/140‑1 (MQ=255)

   atTGCTCACAATTATCCACAAATTCCTGCGGACTAAATTCAGCAATAAATTGATCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCa                                                                                                                                   <  2:900589/140‑1 (MQ=255)

     tGCTCACAATTATCCACAAATTCCTGCGGACTAAATTCAGCAATAAATTGATCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAag                                                                                                                                 >  1:1752392/1‑140 (MQ=255)

     tGCTCACAATTATCCACAAATTCCTGCGGACTAAATTCAGCAATAAATTGATCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAag                                                                                                                                 >  1:1305247/1‑140 (MQ=255)

     tGCTCACAATTATCCACAAATTCCTGCGGACTAAATTCAGCAATAAATTGATCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAag                                                                                                                                 >  2:468320/1‑140 (MQ=255)

     tGCTCACAATTATCCACAAATTCCTGCGGACTAAATTCAGCAATAAATTGATCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAag                                                                                                                                 >  2:265503/1‑140 (MQ=255)

       cTCACAATTATCCACAAATTCCTGCGGACTAAATTCAGCAATAAATTGATCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACtata                                                                                                                                        <  1:2085045/131‑1 (MQ=255)

       cTCACAATTATCCACAAATTCCTGCGGACTAAATTCAGCAATAAATTGATCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACtata                                                                                                                                        >  2:2085045/1‑131 (MQ=255)

       cTCACAATTATCCACAAATTCCTGCGGACTAAATTCAGCAATAAATTGATCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAagag                                                                                                                               >  2:617054/1‑140 (MQ=255)

       cTCACAATTATCCACAAATTCCTGCGGACTAAATTCAGCAATAAATTGATCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAagag                                                                                                                               >  2:162164/1‑140 (MQ=255)

       cTCACAATTATCCACAAATTCCTGCGGACTAAATTCAGCAATAAATTGATCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAagag                                                                                                                               >  2:2030728/1‑140 (MQ=255)

           caATTATCCACAAATTCCTGCGGACTAAATTCAGCAATAAATTGATCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACtt                                                                                                                           <  1:284962/140‑1 (MQ=255)

            aaTTATCCACAAATTCCTGCGGACTAAATTCAGCAATAAATTGATCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTa                                                                                                                          >  1:1074033/1‑140 (MQ=255)

             aTTATCCACAAATTCCTGCGGACTAAATTCAGCAATAAATTGATCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTAt                                                                                                                         >  1:122888/1‑140 (MQ=255)

                 tCCACAAATTCCTGCGGACTAAATTCAGCAATAAATTGATCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCttt                                                                                                                     >  2:658065/1‑140 (MQ=255)

                 tCCACAAATTCCTGCGGACTAAATTCAGCAATAAATTGATCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCttt                                                                                                                     >  1:1956369/1‑140 (MQ=255)

                   cacaAATTCCTGCGGACTAAATTCAGCAATAAATTGATCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGa                                                                                                                   <  2:1875481/140‑1 (MQ=255)

                    acaAATTCCTGCGGACTAAATTCAGCAATAAATTGATCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGaa                                                                                                                  <  2:1917769/140‑1 (MQ=255)

                     caAATTCCTGCGGACTAAATTCAGCAATAAATTGATCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGaaa                                                                                                                 <  2:303345/140‑1 (MQ=255)

                      aaaTTCCTGCGGACTAAATTCAGCAATAAATTGATCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCaa                                                                                                                                  >  1:977874/1‑122 (MQ=255)

                      aaaTTCCTGCGGACTAAATTCAGCAATAAATTGATCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGAAAc                                                                                                                >  2:1373868/1‑140 (MQ=255)

                      aaaTTCCTGCGGACTAAATTCAGCAATAAATTGATCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGAAAc                                                                                                                <  1:6043/140‑1 (MQ=255)

                      aaaTTCCTGCGGACTAAATTCAGCAATAAATTGATCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGAAAc                                                                                                                >  2:6043/1‑140 (MQ=255)

                        aTTCCTGCGGACTAAATTCAGCAATAAATTGATCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGAAACTg                                                                                                              >  2:2048542/1‑140 (MQ=255)

                        aTTCCTGCGGACTAAATTCAGCAATAAATTGATCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGAAACTg                                                                                                              >  1:86528/1‑140 (MQ=255)

                         ttCCTGCGGACTAAATTCAGCAATAAATTGATCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGAAACTgg                                                                                                             <  1:1593496/140‑1 (MQ=255)

                         ttCCTGCGGACTAAATTCAGCAATAAATTGATCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGAAACTgg                                                                                                             <  1:162164/140‑1 (MQ=255)

                         ttCCTGCGGACTAAATTCAGCAATAAATTGATCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGAAACTgg                                                                                                             <  2:1364381/140‑1 (MQ=255)

                         ttCCTGCGGACTAAATTCAGCAATAAATTGATCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGAAACTgg                                                                                                             <  2:223956/140‑1 (MQ=255)

                         ttCCTGCGGACTAAATTCAGCAATAAATTGATCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGAAACTgg                                                                                                             <  1:468320/140‑1 (MQ=255)

                         ttCCTGCGGACTAAATTCAGCAATAAATTGATCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGAAACTgg                                                                                                             <  1:1408349/140‑1 (MQ=255)

                         ttCCTGCGGACTAAATTCAGCAATAAATTGATCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGAAACTgg                                                                                                             <  1:265503/140‑1 (MQ=255)

                          tCCTGCGGACTAAATTCAGCAATAAATTGATCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCTATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGATTTATGTTTGAAACTggt                                                                                                            <  2:1769407/140‑1 (MQ=255)

                          tCCTGCGGACTAAATTCAGCAATAAATTGATCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGAAACTggt                                                                                                            <  2:1752392/140‑1 (MQ=255)

                          tCCTGCGGACTAAATTCAGCAATAAATTGATCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGAAACTggt                                                                                                            <  1:1433775/140‑1 (MQ=255)

                          tCCTGCGGACTAAATTCAGCAATAAATTGATCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGAAACTggt                                                                                                            <  2:2086386/140‑1 (MQ=255)

                           ccTGCGGACTAAATTCAGCAATAAATTGATCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGaaa                                                                                                                 >  2:1812049/1‑134 (MQ=255)

                           ccTGCGGACTAAATTCAGCAATAAATTGATCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGaaa                                                                                                                 <  1:1812049/134‑1 (MQ=255)

                           ccTGCGGACTAAATTCAGCAATAAATTGATCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGAAACTggta                                                                                                           <  2:1101604/140‑1 (MQ=255)

                           ccTGCGGACTAAATTCAGCAATAAATTGATCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGAAACTggta                                                                                                           <  1:1373868/140‑1 (MQ=255)

                           ccTGCGGACTAAATTCAGCAATAAATTGATCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGAAACTggta                                                                                                           <  1:617054/140‑1 (MQ=255)

                            cTGCGGACTAAATTCAGCAATAAATTGATCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGAAACTggtag                                                                                                          <  2:122888/140‑1 (MQ=255)

                             tGCGGACTAAATTCAGCAATAAATTGATCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGa                                                                                                                   >  2:823052/1‑130 (MQ=255)

                             tGCGGACTAAATTCAGCAATAAATTGATCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGa                                                                                                                   <  1:823052/130‑1 (MQ=255)

                                 gACTAAATTCAGCAATAAATTGATCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGAAACTGGTAGGtata                                                                                                     <  2:1018940/140‑1 (MQ=255)

                                  aCTAAATTCAGCAATAAATTGATCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGAAACTGGTAGGTatat                                                                                                    >  1:1265601/1‑140 (MQ=255)

                                   cTAAATTCAGCAATAAATTGATCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGAAACTGGTAGGTATATg                                                                                                   <  1:1758393/140‑1 (MQ=255)

                                   cTAAACTCAGCAATTAATTGATCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGTTCTTTCCATATTGATTTGTCGACAAAATATCGCTATGCTTCAAGAGACTTATCTTTGAAACTGGTAGGTATATg                                                                                                   <  2:820919/140‑1 (MQ=255)

                                      aaTTCAGCAATAAATTGATCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGAAACTGGTAGGTATATGgag                                                                                                <  2:2110861/140‑1 (MQ=255)

                                      aaTTCAGCAATAAATTGATCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGAAACTGGTAGGTATATGgag                                                                                                <  1:571678/140‑1 (MQ=255)

                                           aGCAATAAATTGATCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGAAACTGGTAGGTATATGGAGATTTa                                                                                           <  1:1946449/140‑1 (MQ=255)

                                           aGCAATAAATTGATCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGAAACTGGTAGGTATATGGAGATTTa                                                                                           >  2:1946449/1‑140 (MQ=255)

                                           aGCAATAAATTGATCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGAAACTGGTAGGTATATGGAGATTTa                                                                                           <  2:478104/140‑1 (MQ=255)

                                            gCAATAAATTGATCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGAAACTGGTAGGTATATGGAGATTTAc                                                                                          >  2:1536113/1‑140 (MQ=255)

                                            gCAATAAATTGATCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGAAACTGGTAGGTATATGGAGATTTAc                                                                                          >  2:2369646/1‑140 (MQ=255)

                                               aTAAATTGATCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGAAACTGGTAGGTATATGGAGATTTACAgg                                                                                       <  1:1386903/140‑1 (MQ=255)

                                               aTAAATTGATCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGAAACTGGTAGGTATATGGAGATTTACAgg                                                                                       <  1:1455502/140‑1 (MQ=255)

                                                tAAATTGATCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGAAACTGGTAGGTATATGGAGATTTACAGGa                                                                                      <  1:2030728/140‑1 (MQ=255)

                                                tAAATTGATCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGAAACTGGTAGGTATATGGAGATTTACAGGa                                                                                      >  1:578986/1‑140 (MQ=255)

                                                  aaTTGATCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGAAACTGGTAGGTATATGGAGATTTACAGGa                                                                                      <  2:867681/138‑1 (MQ=255)

                                                  aaTTGATCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGAAACTGGTAGGTATATGGAGATTTACAGGa                                                                                      >  1:867681/1‑138 (MQ=255)

                                                  aaTTGATCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGAAACTGGTAGGTATATGGAGATTTACAGGAcc                                                                                    >  2:2110556/1‑140 (MQ=255)

                                                       aTCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGAAACTGGTAGGTATATGGAGATTTACAGGACCTGata                                                                               <  1:1536113/140‑1 (MQ=255)

                                                       aTCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGAAACTGGTAGGTATATGGAGATTTACAGGACCTGata                                                                               >  2:652532/1‑140 (MQ=255)

                                                       aTCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGAAACTGGTAGGTATATGGAGATTTACAGGACCTGata                                                                               <  1:1771429/140‑1 (MQ=255)

                                                            tAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGAAACTGGTAGGTATATGGAGATTTACa                                                                                         <  1:261164/125‑1 (MQ=255)

                                                            tAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGAAACTGGTAGGTATATGGAGATTTACa                                                                                         >  2:261164/1‑125 (MQ=255)

                                                            tAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGAAACTGGTAGGTATATGGAGATTTACAGGACCTGATATTGAt                                                                          >  1:197805/1‑140 (MQ=255)

                                                                   cacaAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGAAACTGGTAGGTATATGGAGATTTACAGGACCTGATATTGATGGTAAtt                                                                   >  1:736216/1‑140 (MQ=255)

                                                                      aaaaCGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGAAACTGGTAGGTATATGGAGATTTACAGGACCTGATATTGATGGTAAtt                                                                   >  1:2198910/1‑137 (MQ=255)

                                                                      aaaaCGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGAAACTGGTAGGTATATGGAGATTTACAGGACCTGATATTGATGGTAAtt                                                                   <  2:2198910/137‑1 (MQ=255)

                                                                           gCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGAAACTGGTAGGTATATGGAGATTTACAGGACCTGATATTGATGGTAATTTTGTTAcc                                                           >  2:2345704/1‑140 (MQ=255)

                                                                             ttATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGAAACTGGTAGGTATATGGAGATTTACAGGACCTGATATTGATGGTAATTTTGTTACCCa                                                         >  2:1131856/1‑140 (MQ=255)

                                                                                     atGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGAAACTGGTAGGTATATGGAGATTTACAGGACCTGATATTGATGGTAATTTTGTTACCCAACTTTCaa                                                 >  1:1000128/1‑140 (MQ=255)

                                                                                               atatGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGAAACTGGTAGGTATATGGAGATTTACAGGACCTGATATTGATGGTAATTTTGTTACCCAACTTTCAAAAATTTTGAt                                       >  1:521490/1‑140 (MQ=255)

                                                                                                tatGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGAAACTGGTAGGTATATGGAGATTTACAGGACCTGATATTGATGGTAATTTTGTTACCCAACTTTCAAAAATTTTGATa                                      >  2:17825/1‑140 (MQ=255)

                                                                                                  tGGACATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGAAACTGGTAGGTATATGGAGATTTACAGGACCTGATATTGATGGTAATTTTGTTACCCAACTTTCAAAAATTTTGATaaa                                    <  1:437722/140‑1 (MQ=255)

                                                                                                      cATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGAAACTGGTAGGTATATGGAGATTTACAGGACCTGATATTGATGGTAATTTTGTTACCCAACTTTCAAAAATTTTGATAAAAACa                                <  1:2110556/140‑1 (MQ=255)

                                                                                                      cATTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGAAACTGGTAGGTATATGGAGATTTACAGGACCTGATATTGATGGTAATTTTGTTACCCAACTTTCAAAAATTTTGATAAAAACa                                <  1:668902/140‑1 (MQ=255)

                                                                                                       aTTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGAAACTGGTAGGTATATGGAGATTTACAGGACCTGATATTGATGGTAATTTTGTTACCCAACTTTCAAAAATTTTGATAAAAACAt                               >  2:305122/1‑140 (MQ=255)

                                                                                                       aTTCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGAAACTGGTAGGTATATGGAGATTTACAGGACCTGATATTGATGGTAATTTTGTTACCCAACTTTCAAAAATTTTGATAAAAACAt                               >  2:1431036/1‑140 (MQ=255)

                                                                                                         tCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGAAACTGGTAGGTATATGGAGATTTACAGGACCTGATATTGATGGTAATTTTGTTACCCAACTTTCAAAAATTTTGATAAAAACATCa                             >  1:1629670/1‑140 (MQ=255)

                                                                                                         tCCATATTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGAAACTGGTAGGTATATGGAGATTTACAGGACCTGATATTGATGGTAATTTTGTTACCCAACTTTCAAAAATTTTGATAAAAACATCa                             >  2:1634653/1‑140 (MQ=255)

                                                                                                            atatTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGAAACTGGTAGGTATATGGAGATTTACAGGACCTGATATTGATGGTAATTTTGTTACCCAACTTTCAAAAATTTTGATAAAAACATCAAct                          >  1:1430251/1‑140 (MQ=255)

                                                                                                             tatTGATTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGAAACTGGTAGGTATATGGAGATTTACAGGACCTGATATTGATGGTAATTTTGTTACCCAACTTTCAAAAATTTTGATAAAAACATCAActt                         >  2:897624/1‑140 (MQ=255)

                                                                                                                  aTTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGAAACTGGTAGGTATATGGAGATTTACAGGACCTGATATTGATGGTAATTTTGTTACCCAACTTTCAAAAATTTTGATAAAAACATCAACTtcttct                    >  2:842401/1‑140 (MQ=255)

                                                                                                                  aTTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGAAACTGGTAGGTATATGGAGATTTACAGGACCTGATATTGATGGTAATTTTGTTACCCAACTTTCAAAAATTTTGATAAAAACATCAACTtcttct                    >  2:1946462/1‑140 (MQ=255)

                                                                                                                  aTTTGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGAAACTGGTAGGTATATGGAGATTTACAGGACCTGATATTGATGGTAATTTTGTTACCCAACTTTCAAAAATTTTGATAAAAACATCAACTtcttct                    >  2:1628188/1‑140 (MQ=255)

                                                                                                                     tGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGAAACTGGTAGGTATATGGAGATTTACAGGACCTGATATTGATGGTAATTTTGTTACCCAACTTTCAAAAATTTTGATAAAAACATCAACTTCTTCTGaa                 <  2:1265601/140‑1 (MQ=255)

                                                                                                                     tGTCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGAAACTGGTAGGTATATGGAGATTTACAGGACCTGATATTGATGGTAATTTTGTTACCCAACTTTCAAAAATTTTGATAAAAACATCAACTTCTTCTGaa                 >  2:778416/1‑140 (MQ=255)

                                                                                                                       tCGACAAAATATGACTATACTTCAAGAGACTTATCTTTGAAACTGGTAGGTATATGGAGATTTACAGGACCTGATATTGATGGTAATTTTGTTACCCAACTTTCAAAAATTTTGATAAAAACATCAACTTCTTCTGAAgg               >  2:94958/1‑140 (MQ=255)

                                                                                                                          aCAAAATATGACTATACTTCAAGAGACTTATCTTTGAAACTGGTAGGTATATGGAGATTTACAGGACCTGATATTGATGGTAATTTTGTTACCCAACTTTCAAAAATTTTGATAAAAACATCAACTTCTTCTGAAGGttt            <  1:2365497/140‑1 (MQ=255)

                                                                                                                          aCAAAATATGACTATACTTCAAGAGACTTATCTTTGAAACTGGTAGGTATATGGAGATTTACAGGACCTGATATTGATGGTAATTTTGTTACCCAACTTTCAAAAATTTTGATAAAAACATCAACTTCTTCTGAAGGttt            <  1:1628188/140‑1 (MQ=255)

                                                                                                                          aCAAAATATGACTATACTTCAAGAGACTTATCTTTGAAACTGGTAGGTATATGGAGATTTACAGGACCTGATATTGATGGTAATTTTGTTACCCAACTTTCAAAAATTTTGATAAAAACATCAACTTCTTCTGAAGGttt            <  1:1131856/140‑1 (MQ=255)

                                                                                                                            aaaaTATGACTATACTTCAAGAGTCTTATCTTTGAAACTGGTAGGTATATGGAGATTTACAGGACCTGATATTGATGGTAATTTTGTTACCCAACTTTCAAAAATTTTGATAAAAACATCAACTTCTTCTGAAGGTTTTa          <  1:1731329/140‑1 (MQ=255)

                                                                                                                            aaaaTATGACTATACTTCAAGAGACTTATCTTTGAAACTGGTAGGTATATGGAGATTTACAGGACCTGATATTGATGGTAATTTTGTTACCCAACTTTCAAAAATTTTGATAAAAACATCAACTTCTTCTGAAGGTTTTa          <  2:1713810/140‑1 (MQ=255)

                                                                                                                                   gACTATACTTCAAGAGACTTATCTTTGAAACTGGTAGGTATATGGAGATTTACAGGACCTGATATTGATGGTAATTTTGTTACCCAACTTTCAAAAATTTTGATAAAAACATCAACTTCTTCTGAAGGTTTTAACAatat   <  1:295780/140‑1 (MQ=255)

                                                                                                                                    aCTATACTTCAAGAGACTTATCTTTGAAACTGGTAGGTATATGGAGATTTACAGGACCTGATATTGATGGTAATTTTGTTACCCAACTTTCAAAAATTTTGATAAAAACATCAACTTCTTCTGAAGGTTTTAACAAtata  <  1:778416/140‑1 (MQ=255)

                                                                                                                                    aCTATACTTCAAGAGACTTATCTTTGAAACTGGTAGGTATATGGAGATTTACAGGACCTGATATTGATGGTAATTTTGTTACCCAACTTTCAAAAATTTTGATAAAAACATCAACTTCTTCTGAAGGTTTTAACAAtata  <  1:842401/140‑1 (MQ=255)

AATATTGCTCACAATTATCCACAAATTCCTGCGGACTAAATTCAGCAATAAATTGATCGGTAAAAAACACAAAACGCTTATCATCATGAAATGTAATATGGACATTCCATATTGATTTGTCGACAAAATATGACTCTACTTCAAGAGACTTATCTTTGAAACTGGTAGGTATATGGAGATTTACAGGACCTGATATTGATGGTAATTTTGTTACCCAACTTTCAAAAATTTTGATAAAAACATCAACTTCTTCTGAAGGTTTTAACAATATA  >  NC_000913/2995454‑2995725

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A