Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A3 F73 I1 R1	27	139.9	4778260	99.2%	4740033	138.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,835,337	G→T	A198E (GCA→GAA)	yicJ ←	putative xyloside transporter YicJ

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,835,337	0	G	T	100.0%	515.6 / NA	143	A198E (GCA→GAA)	yicJ	putative xyloside transporter YicJ
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (77/66); total (77/66)

Only 100 of 146 total aligned reads displayed.

CCGCCAGGATATTGAAAATGGTTAGTAAACCGACAATCCGCCACTGGTCGTTTTGCCAGATATCACGTAAATCTTCCCGCATAGACGTTGTTGTAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATGCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATACCGCCCTGGAAACCGAGTGGTTTATTATCACCGCCAATTAAATTAACCAGTGGCATCATCAGAACAGTAGAAAGCATGCCTCCCGCGGTCGCCAG  >  NC_000913/3835200‑3835470

 cGCCAGGATATTGAAAATGGTTAGTAAACCGACAATCCGCCACTGGTCGTTTTGCCAGATATCACGTAAATCTTCCCGCATAGACGTTGTTGTAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCa                                                                                                                                    >  2:2189685/1‑140 (MQ=255)

 cGCCAGGATATTGAAAATGGTTAGTAAACCGACAATCCGCCACTGGTCGTTTTGCCAGATATCACGTAAATCTTCCCGCATAGACGTTGTTGTAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCa                                                                                                                                    >  2:1178668/1‑140 (MQ=255)

   ccAGGATATTGAAAATGGTTAGTAAACCGACAATCCGCCACTGGTCGTTTTGCCAGATATCACGTAAATCTTCCCGCATAGACGTTGTTGTAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGc                                                                                                                                  <  2:1164622/140‑1 (MQ=255)

      ggATATTGAAAATGGTTAGTAAACCGACAATCCGCCACTGGTCGTTTTGCCAGATATCACGTAAATCTTCCCGCATAGACGTTGTTGTAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGcatc                                                                                                                               <  2:1290563/140‑1 (MQ=255)

       gATATTGAAAATGGTTAGTAAACCGACAATCCGCCACTGGTCGTTTTGCCAGATATCACGTAAATCTTCCCGCATAGACGTTGTTGTAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGcatca                                                                                                                              >  1:397093/1‑140 (MQ=255)

       gATATTGAAAATGGTTAGTAAACCGACAATCCGCCACTGGTCGTTTTGCCAGATATCACGTAAATCTTCCCGCATAGACGTTGTTGTAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGcatca                                                                                                                              >  2:197404/1‑140 (MQ=255)

         tatTGAAAATGGTTAGTAAACCGACAATCCGCCACTGGTCGTTTTGCCAGATATCACGTAAATCTTCCCGCATAGACGTTGTTGTAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATg                                                                                                                            >  1:2298477/1‑140 (MQ=255)

           ttGAAAATGGTTAGTAAACCGACAATCCGCCACTGGTCGTTTTGCCAGATATCACGTAAATCTTCCCGCATAGACGTTGTTGTAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGc                                                                                                                                  >  2:1753397/1‑132 (MQ=255)

           ttGAAAATGGTTAGTAAACCGACAATCCGCCACTGGTCGTTTTGCCAGATATCACGTAAATCTTCCCGCATAGACGTTGTTGTAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGaa                                                                                                                          >  1:1460366/1‑140 (MQ=255)

           ttGAAAATGGTTAGTAAACCGACAATCCGCCACTGGTCGTTTTGCCAGATATCACGTAAATCTTCCCGCATAGACGTTGTTGTAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGaa                                                                                                                          >  1:1770533/1‑140 (MQ=255)

           ttGAAAATGGTTAGTAAACCGACAATCCGCCACTGGTCGTTTTGCCAGATATCACGTAAATCTTCCCGCATAGACGTTGTTGTAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGaa                                                                                                                          >  1:4614/1‑140 (MQ=255)

            tGAAAATGGTTAGTAAACCGACAATCCGCCACTGGTCGTTTTGCCAGATATCACGTAAATCTTCCCGCATAGACGTTGTTGTAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAAt                                                                                                                         >  2:1448860/1‑140 (MQ=255)

             gAAAATGGTTAGTAAACCGACAATCCGCCACTGGTCGTTTTGCCAGATATCACGTAAATCTTCCCGCATAGACGTTGTTGTAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATg                                                                                                                        <  2:1624179/140‑1 (MQ=255)

              aaaaTGGTTAGTAAACCGACAATCCGCCACTGGTCGTTTTGCCAGATATCACGTAAATCTTCCCGCATAGACGTTGTTGTAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGc                                                                                                                       <  2:1833740/140‑1 (MQ=255)

                aaTGGTTAGTAAACCGACAATCCGCCACTGGTCGTTTTGCCAGATATCACGTAAATCTTCCCGCATAGACGTTGTTGTAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGcca                                                                                                                     <  1:32597/140‑1 (MQ=255)

                 aTGGTTAGTAAACCGACAATCCGCCACTGGTCGTTTTGCCAGATATCACGTAAATCTTCCCGCATAGACGTTGTTGTAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGccac                                                                                                                    >  1:1764651/1‑140 (MQ=255)

                   ggTTAGTAAACCGACAATCCGCCACTGGTCGTTTTGCCAGATATCACGTAAATCTTCCCGCATAGACGTTGTTGTAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGccacca                                                                                                                  >  2:447047/1‑140 (MQ=255)

                     ttAGTAAACCGACAATCCGCCACTGGTCGTTTTGCCAGATATCACGTAAATCTTCCCGCATAGACGTTGTTGTAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACg                                                                                                                >  1:110436/1‑140 (MQ=255)

                     ttAGTAAACCGACAATCCGCCACTGGTCGTTTTGCCAGATATCACGTAAATCTTCCCGCATAGACGTTGTTGTAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACg                                                                                                                >  2:2272119/1‑140 (MQ=255)

                      tAGTAAACCGACAATCCGCCACTGGTCGTTTTGCCAGATATCACGTAAATCTTCCCGCATAGACGTTGTTGTAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACgg                                                                                                               >  2:770940/1‑140 (MQ=255)

                       aGTAAACCGACAATCCGCCACTGGTCGTTTTGCCAGATATCACGTAAATCTTCCCGCATAGACGTTGTTGTAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGa                                                                                                              <  1:401513/140‑1 (MQ=255)

                        gTAAACCGACAATCCGCCACTGGTCGTTTTGCCAGATATCACGTAAATCTTCCCGCATAGACGTTGTTGTAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGaa                                                                                                             <  1:447047/140‑1 (MQ=255)

                             ccGACAATCCGCCACTGGTCGTTTTGTCAGATATCACGTAAATCTTCCCGCATAGACGTTGTTGTAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGAc                                                                                                        >  1:2222836/1‑140 (MQ=255)

                              cGACAATCCGCCACTGGTCGTTTTGCCAGATATTACGTAAATCTTCCCGCATAGACGTTGTTGTAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGAcc                                                                                                       >  2:688638/1‑140 (MQ=255)

                              cGACAATCCGCCACTGGTCGTTTTGCCAGATATCACGTAAATCTTCCCGCATAGACGTTGTTGTAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGaa                                                                                                             >  1:210936/1‑134 (MQ=255)

                              cGACAATCCGCCACTGGTCGTTTTGCCAGATATCACGTAAATCTTCCCGCATAGACGTTGTTGTAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGAcc                                                                                                       >  2:1815518/1‑140 (MQ=255)

                              cGACAATCCGCCACTGGTCGTTTTGCCAGATATCACGTAAATCTTCCCGCATAGACGTTGTTGTAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGAcc                                                                                                       >  2:1140207/1‑140 (MQ=255)

                                   aTCCGCCACTGGTCGTTTTGCCAGATATCACGTAAATCTTCCCGCATAGACGTTGTTGTAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGAt                                                                                                  >  1:1445025/1‑140 (MQ=255)

                                   aTCCGCCACTGGTCGTTTTGCCAGATATCACGTAAATCTTCCCGCATAGACGTTGTTGTAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGAt                                                                                                  >  2:516851/1‑140 (MQ=255)

                                    tCCGCCACTGGTCGTTTTGCCAGATATCACGTAAATCTTCCCGCATAGACGTTGTTGTAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATa                                                                                                 <  2:934461/140‑1 (MQ=255)

                                    tCCGCCACTGGTCGTTTTGCCAGATATCACGTAAATCTTCCCGCATAGACGTTGTTGTAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATa                                                                                                 <  2:1199103/140‑1 (MQ=255)

                                    tCCGCCACTGGTCGTTTTGCCAGATATCACGTAAATCTTCCCGCATAGACGTTGTTGTAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATa                                                                                                 <  1:946448/140‑1 (MQ=255)

                                    tCCGCCACTGGTCGTTTTGCCAGATATCACGTAAATCTTCCCGCATAGACGTTGTTGTAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATa                                                                                                 <  1:822526/140‑1 (MQ=255)

                                       gCCACTGGTCGTTTTGCCAGATATCACGTAAATCTTCCCGCATAGACGTTGTTGTAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATAcc                                                                                               >  2:596642/1‑139 (MQ=255)

                                       gCCACTGGTCGTTTTGCCAGATATCACGTAAATCTTCCCGCATAGACGTTGTTGTAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATAcc                                                                                               <  1:596642/139‑1 (MQ=255)

                                                  ttttGCCAGATATCACGTAAATCTTCCCGCATAGACGTTGTTGTAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATACCGCCCTGGAAAcc                                                                                   <  1:2014909/140‑1 (MQ=255)

                                                   tttGCCAGATATCACGTAAATCTTCCCGCATAGACGTTGTTGTAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATACCGCCCTGGAAACCg                                                                                  >  2:1448693/1‑140 (MQ=255)

                                                    ttGCCAGATATCACGTAAATCTTCCCGCATAGACGTTGTTGTAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATACCGCCCTGGAAACCGa                                                                                 <  1:1162639/140‑1 (MQ=255)

                                                    ttGCCAGATATCACGTAAATCTTCCCGCATAGACGTTGTTGTAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATACCGCCCTGGAAACCGa                                                                                 <  1:955668/140‑1 (MQ=255)

                                                    ttGCCAGATATCACGTAAATCTTCCCGCATAGACGTTGTTGTAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATACCGCCCTGGAAACCGa                                                                                 <  1:749818/140‑1 (MQ=255)

                                                    ttGCCAGATATCACGTAAATCTTCCCGCATAGACGTTGTTGTAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATACCGCCCTGGAAACCGa                                                                                 <  1:2383359/140‑1 (MQ=255)

                                                     tGCCAGGTATCACGTAAATCTTCCCGCCTAGACGTTGTTGTAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGCCCGCGATACCGCCCTGGAAACCGAg                                                                                <  2:2013209/140‑1 (MQ=255)

                                                     tGCCAGATATCACGTAAATCTTCCCGCATAGACGTTGTTGTAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATACCGCCCTGGAAACCGAg                                                                                <  1:1448693/140‑1 (MQ=255)

                                                     tGCCAGATATCACGTAAATCTTCCCGCATAGACGTTGTTGTAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATACCGCCCTGGAAACCGAg                                                                                <  2:776610/140‑1 (MQ=255)

                                                        cAGATATCACGTAAATCTTCCCGCATAGACGTTGTTGTAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATACCGCCCTGGAAACCGAGTgg                                                                             <  1:1140207/140‑1 (MQ=255)

                                                        cAGATATCACGTAAATCTTCCCGCATAGACGTTGTTGTAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATACCGCCCTGGAAACCGAGTgg                                                                             <  2:397093/140‑1 (MQ=255)

                                                        cAGATATCACGTAAATCTTCCCGCATAGACGTTGTTGTAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATACCGCCCTGGAAACCGAGTgg                                                                             <  1:1815518/140‑1 (MQ=255)

                                                            tatCACGTAAATCTTCCCGCATAGACGTTGTTGTAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATACCGCCCTGGAAACCGAGTGGTtta                                                                         <  1:517071/140‑1 (MQ=255)

                                                                 cGTAAATCTTCCCGCATAGACGTTGTTGTAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATACCGCCCTGGAAACCGAGTGGTTTATTATc                                                                    >  2:615564/1‑140 (MQ=255)

                                                                      aTCTTCCCGCATAGACGTTGTTGTAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATACCGCCCTGGAAACCGAGt                                                                               <  1:1671425/124‑1 (MQ=255)

                                                                      aTCTTCCCGCATAGACGTTGTTGTAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATACCGCCCTGGAAACCGAGt                                                                               <  1:433541/124‑1 (MQ=255)

                                                                      aTCTTCCCGCATAGACGTTGTTGTAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATACCGCCCTGGAAACCGAGt                                                                               >  2:433541/1‑124 (MQ=255)

                                                                      aTCTTCCCGCATAGACGTTGTTGTAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATACCGCCCTGGAAACCGAGTGGTTTATTATCACCGc                                                               >  2:650484/1‑140 (MQ=255)

                                                                         ttCCCGCATAGACGTTGTTGTAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATACCGCCCTGGAAACCGAGTGGTTTATTATCACCGCCaa                                                            <  2:2222836/140‑1 (MQ=255)

                                                                          tCCCGCATAGACGTTGTTGTAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATACCGCCCTGGAAACCGAGTGGTTTATTATCACCGCCaat                                                           >  2:2104786/1‑140 (MQ=255)

                                                                          tCCCGCATAGACGTTGTTGTAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATACCGCCCTGGAAACCGAGTGGTTTATTATCACCGCCaa                                                            >  2:1980191/1‑139 (MQ=255)

                                                                          tCCCGCATAGACGTTGTTGTAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATACCGCCCTGGAAACCGAGTGGTTTATTATCACCGCCaa                                                            <  1:1980191/139‑1 (MQ=255)

                                                                            ccGCATAGACGTTGTTGTAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATACCGCCCTGGAAACCGAGTGGTTTATTATCACCGCCaatta                                                         >  1:861593/1‑140 (MQ=255)

                                                                            ccGCATAGACGTTGTTGTAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATACCGCCCTGGAAACCGAGTGGTTTATTATCACCGCCaatta                                                         >  2:1312478/1‑140 (MQ=255)

                                                                                 tAGACGTTGTTGTAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATACCGCCCTGGAAACCGAGTGGTTTATTATCACCGCCaattaaatta                                                    <  2:1445025/140‑1 (MQ=255)

                                                                                          ttgtAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATACCGCCCTGGAAACCGAGTGGTTTATTATCACCGCCAATTAAATTAACCAGTGGc                                           <  1:1666246/140‑1 (MQ=255)

                                                                                          ttgtAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATACCGCCCTGGAAACCGAGTGGTTTATTATCACCGCCAATTAAATTAACCAGTGGc                                           <  2:1249939/140‑1 (MQ=255)

                                                                                          ttgtAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATACCGCCCTGGAAACCGAGTGGTTTATTATCACCGCCAATTAAATTAACCAGTGGc                                           <  1:1084242/140‑1 (MQ=255)

                                                                                          ttgtAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATACCGCCCTGGAAACCGAGTGGTTTATTATCACCGCCAATTAAATTAACCAGTGGc                                           <  2:1764651/140‑1 (MQ=255)

                                                                                          ttgtAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATACCGCCCTGGAAACCGAGTGGTTTATTATCACCGCCAATTAAATTAACCAGTGGc                                           <  2:272518/140‑1 (MQ=255)

                                                                                               ggtgttGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATACCGCCCTGGAAACCGAGTGGTTTATTAGCACCGCCAATTAAATTAACCAGTGGcatcat                                      <  2:533595/140‑1 (MQ=255)

                                                                                                  ggtgCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATACCGCCCTGGAAACCGAGTGGTTTATTATCACCGCCAATTAAATTAACCAGTGGCATCATCAg                                   <  1:352713/140‑1 (MQ=255)

                                                                                                  ggtgCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATACCGCCCTGGAAACCGAGTGGTTTATTATCACCGCCAATTAAATTAACCAGTGGCATCATCAg                                   >  1:1212418/1‑140 (MQ=255)

                                                                                                    tgCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATACCGCCCTGGAAACCGAGTGGTTTATTATCACCGCCAATTAAATTAACCa                                                <  1:2297770/125‑1 (MQ=255)

                                                                                                    tgCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATACCGCCCTGGAAACCGAGTGGTTTATTATCACCGCCAATTAAATTAACCa                                                >  2:2297770/1‑125 (MQ=255)

                                                                                                    tgCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATACCGCCCTGGAAACCGAGTGGTTTATTATCACCGCCAATTAAATTAACCAGTGGc                                           <  1:2378891/130‑1 (MQ=255)

                                                                                                    tgCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATACCGCCCTGGAAACCGAGTGGTTTATTATCACCGCCAATTAAATTAACCAGTGGc                                           <  1:1887897/130‑1 (MQ=255)

                                                                                                    tgCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATACCGCCCTGGAAACCGAGTGGTTTATTATCACCGCCAATTAAATTAACCAGTGGc                                           >  2:1887897/1‑130 (MQ=255)

                                                                                                    tgCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATACCGCCCTGGAAACCGAGTGGTTTATTATCACCGCCAATTAAATTAACCAGTGGc                                           >  2:2378891/1‑130 (MQ=255)

                                                                                                    tgCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATACCGCCCTGGAAACCGAGTGGTTTATTATCACCGCCAATTAAATTAACCAGTGGCATCATCAg                                   >  1:22701/1‑138 (MQ=255)

                                                                                                    tgCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATACCGCCCTGGAAACCGAGTGGTTTATTATCACCGCCAATTAAATTAACCAGTGGCATCATCAGaa                                 >  2:429584/1‑140 (MQ=255)

                                                                                                    tgCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATACCGCCCTGGAAACCGAGTGGTTTATTATCACCGCCAATTAAATTAACCAGTGGCATCATCAGaa                                 >  1:2145968/1‑140 (MQ=255)

                                                                                                    tgCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATACCGCCCTGGAAACCGAGTGGTTTATTATCACCGCCAATTAAATTAACCAGTGGCATCATCAGaa                                 >  1:727210/1‑140 (MQ=255)

                                                                                                    tgCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATACCGCCCTGGAAACCGAGTGGTTTATTATCACCGCCAATTAAATTAACCAGTGGCATCATCAGaa                                 >  2:974745/1‑140 (MQ=255)

                                                                                                    tgCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATACCGCCCTGGAAACCGAGTGGTTTATTATCACCGCCAATTAAATTAACCAGTGGCATCATCAGaa                                 >  1:1653860/1‑140 (MQ=255)

                                                                                                    tgCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATACCGCCCTGGAAACCGAGTGGTTTATTATCACCGCCAATTAAATTAACCAGTGGCATCATCAGaa                                 <  2:170629/140‑1 (MQ=255)

                                                                                                    tgCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATACCGCCCTGGAAACCGAGTGGTTTATTATCACCGCCAATTAAATTAACCAGTGGCATCATCAGaa                                 >  2:1711220/1‑140 (MQ=255)

                                                                                                      cTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATACCGCCCTGGAAACCGAGTGGTTTATTATCACCGCCAATTAAATTAACCAGTGGCATCATCAGAACa                               <  1:1178668/140‑1 (MQ=255)

                                                                                                        tCAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATACCGCCCTGGAAACCGAGTTGTTTATTATCACCGCCAATTAAATTAACCAGTGGCATCATCAGAACAGt                             <  2:375518/140‑1 (MQ=255)

                                                                                                         cAACGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATACCGCCCTGGAAACCGAGTGGTTTATTATCACCGCCAATTAAATTAACCAGTGGCATCATCAGAACAGTa                            >  2:2021685/1‑140 (MQ=255)

                                                                                                          aaCGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATACCGCCCTGGAAACCGAGTGGTTTATTATCACCGCCAATTAAATTAACCAGTGGCATCATCAGAACAGTAg                           <  2:1460366/140‑1 (MQ=255)

                                                                                                           aCGCGTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATACCGCCCTGGAAACCGAGTGGTTTATTATCACCGCCAATTAAATTAACCAGTGGCATCATCAGAACAGTAGa                          >  2:1560320/1‑140 (MQ=255)

                                                                                                              cgTTCTTTAGTGGTGAAGAAACAAAATTCCATCATCATGAATGCCACCACGGAAAGGACCGCGATACCGCCCTGGAAACCGAGTGGTTTATTATCACCGCCAATTAAATTAACCAGTGGCATCATCAGAACAGTAGAAAg                       >  2:1421559/1‑140 (MQ=255)

                                                                                                              cgTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATACCGCCCTGGAAACCGAGTGGTTTATTATCACCGCCAATTAAATTAACCAGTGGCATCATCAGAACAGTAGAAAg                       >  1:1915016/1‑140 (MQ=255)

                                                                                                              cgTTCTTTAGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATACCGCCCTGGAAACCGAGTGGTTTATTATCACCGCCAATTAAATTAACCAGTGGCATCATCAGAACAGTAGAAAg                       >  2:1233838/1‑140 (MQ=255)

                                                                                                                      aGTGGTGAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATACCGCCCTGGAAACCGAGTGGTTTATTATCACCGCCAATTAAATTAACCAGTGGCATCATCAGAACAGTAGAAAGCATGCCTc               <  1:1233838/140‑1 (MQ=255)

                                                                                                                           tgAAGAAACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATACCGCCCTGGAAACCGAGTGGTTTATTATCACCGCCAATTAAATTAACCAGTGGCATCATCAGAACAGTAGAAAGCATGCCTCCcgcg          >  1:2094153/1‑140 (MQ=255)

                                                                                                                             aagaaACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATACCGCCCTGGAAACCGAGTGGTTTATTATCACCGCCAATTAAATTAACCAGTGGCATCATCAGAACAGTAGAAAGCATGCCTCCCGCGGt        <  2:1653860/140‑1 (MQ=255)

                                                                                                                             aagaaACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATACCGCCCTGGAAACCGAGTGGTTTATTATCACCGCCAATTAAATTAACCAGTGGCATCATCAGAACAGTAGAAAGCATGCCTCCCGCGGt        >  2:1897233/1‑140 (MQ=255)

                                                                                                                             aagaaACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATACCGCCCTGGAAACCGAGTGGTTTATTATCACCGCCAATTAAATTAACCAGTGGCATCATCAGAACAGTAGAAAGCATGCCTCCCGCGGt        >  1:1577043/1‑140 (MQ=255)

                                                                                                                             aagaaACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATACCGCCCTGGAAACCGAGTGGTTTATTATCACCGCCAATTAAATTAACCAGTGGCATCATCAGAACAGTAGAAAGCATGCCTCCCGCGGt        >  1:2010500/1‑140 (MQ=255)

                                                                                                                             aagaaACAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATACCGCCCTGGAAACCGAGTGGTTTATTATCACCGCCAATTAAATTAACCAGTGGCATCATCAGAACAGTAGAAAGCATGCCTCCCGCGGt        >  1:1954330/1‑140 (MQ=255)

                                                                                                                                 aaCAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATACCGCCCTGGAAACCGAGTGGTTTATTATCACCGCCAATTAAATTAACCAGTGGCATCATCAGAACAGTAGAAAGCATGCCTCCCGCGGTCGcc    >  2:1538964/1‑140 (MQ=255)

                                                                                                                                 aaCAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATACCGCCCTGGAAACCGAGTGGTTTATTATCACAGCCAATTAAATTAACCAGTGGCATCATCAGAACAGTAGAAAGCATGCCTCCCGCGGTCGcc    >  1:1983868/1‑140 (MQ=255)

                                                                                                                                   cAAAATTCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATACCGCCCTGGAAACCGAGTGGTTTATTATCACCGCCAATTAAATTAACCAGTGGCATCATCAGAACAGTAGAAAGCATGCCTCCCGCGGTCGCCAg  <  2:1153031/140‑1 (MQ=255)

CCGCCAGGATATTGAAAATGGTTAGTAAACCGACAATCCGCCACTGGTCGTTTTGCCAGATATCACGTAAATCTTCCCGCATAGACGTTGTTGTAGGTGGTGCTTCAACGCGTTCTTTAGTGGTGAAGAAACAAAATGCCAGCATCATGAATGCCACCACGGAAAGGACCGCGATACCGCCCTGGAAACCGAGTGGTTTATTATCACCGCCAATTAAATTAACCAGTGGCATCATCAGAACAGTAGAAAGCATGCCTCCCGCGGTCGCCAG  >  NC_000913/3835200‑3835470

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A