Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F73 I1 R1	29	73.0	2473040	99.2%	2453255	138.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,859,407	C→A	G237V (GGC→GTC)	yidK ←	putative transporter YidK

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,859,407	0	C	A	100.0%	127.1 / NA	36	G237V (GGC→GTC)	yidK	putative transporter YidK
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (18/18); total (18/18)

CGCCCCCTTTTGCCCTTCCGCCAGGCTTTTTGACGCCAGCGTGCGTTGCACGATGCCCTGATTTGTACACCAGTAAAAGGTGTTCACCAGAATCAAACCGGTAAATGCCGCGCCAATCGGCAAGGGATCGGTCGGGCCACCGATTGAGTTTAATTTCTCGGCGTGAACGGTGGTGAGTTGCTCAATGCCCTGCATAAAGCTGCCCTTGCCCATCGCGATTAGGCCAAATACCGGCACCATCAACC  >  NC_000913/3859271‑3859515

cgcCCCCTTTTGCCCTTCCGCCAGGCTTTTTGACGCCAGCGTGCGTTGCACGATGCCCTGATTTGTACACCAGTAAAAGGTGTTCACCAGAATCAAACCGGTAAATGCCGCGCCAATCGGCAAGGGATCGGTCGGGacac                                                                                                           >  2:806684/1‑140 (MQ=255)

cgcCCCCTTTTGCCCTTCCGCCAGGCTTTTTGACGCCAGCGTGCGTTGCACGATGCCCTGATTTGTACACCAGTAAAAGGTGTTCACCAGAATCAAACCGGTAAATGCCGCGCCAATCGGCAAGGGATCGGTCGGGacac                                                                                                           >  2:207186/1‑140 (MQ=255)

cgcCCCCTTTTGCCCTTCCGCCAGGCTTTTTGACGCCAGCGTGCGTTGCACGATGCCCTGATTTGTACACCAGTAAAAGGTGTTCACCAGAATCAAACCGGTAAATGCCGCGCCAATCGGCAAGGGATCGGTCGGGacac                                                                                                           >  1:791747/1‑140 (MQ=255)

cgcCCCCTTTTGCCCTTCCGCCAGGCTTTTTGACGCCAGCGTGCGTTGCACGATGCCCTGATTTGTACACCAGTAAAAGGTGTTCACCAGAATCAAACCGGTAAATGCCGCGCCAATCGGCAAGGGATCGGTCGGGACa                                                                                                            >  2:167479/1‑139 (MQ=255)

 gcCCCCTTTTGCCCTTCCGCCAGGCTTTTTGACGCCAGCGTGCGTTGCACGATGCCCTGATTTGTACACCAGTAAAAGGTGTTCACCAGAATCAAACCGGTAAATGCCGCGCCAATCGGCAAGGGATCGGTCGGGACAcc                                                                                                          >  2:8107/1‑140 (MQ=255)

   ccccTTTTGCCCTTCCGCCAGGCTTTTTGACGCCAGCGTGCGTTGCACGATGCCCTGATTTGTACACCAGTAAAAGGTGTTCACCAGAATCAAACCGGTAAATGCCGCGCCAATCGGCAAGGGATCGGTCGGGACACCGa                                                                                                        >  1:1146538/1‑140 (MQ=255)

   ccccTTTTGCCCTTCCGCCAGGCTTTTTGACGCCAGCGTGCGTTGCACGATGCCCTGATTTGTACACCAGTAAAAGGTGTTCACCAGAATCAAACCGGTAAATGCCGCGCCAATCGGCAAGGGATCGGTCGGGACACCGa                                                                                                        <  1:477440/140‑1 (MQ=255)

    cccTTTTGCCCTTCCGCCAGGCTTTTTGACGCCAGCGTGCGTTGCACGATGCCCTGATTTGTACACCAGTAAAAGGTGTTCACCAGAATCAAACCGGTAAATGCCGCGCCAATCGGCAAGGGATCGGTCGGGACACCGAt                                                                                                       <  1:731088/140‑1 (MQ=255)

     ccTTTTGCCCTTCCGCCAGGCTTTTTGACGCCAGCGTGCGTTGCACGATGCCCTGATTTGTACACCAGTAAAAGGTGTTCACCAGAATCAAACCGGTAAATGCCGCGCCAATCGGCAAGGGATCGGTCGGGACACCGAtt                                                                                                      <  2:533591/140‑1 (MQ=255)

                 ccGCCAGGCTTTTTGACGCCAGCGTGCGTTGCACGATGCCCTGATTTGTACACCAGTAAAAGGTGTTCACCAGAATCAAACCGGTAAATGCCGCGCCAATCGGCAAGGGATCGGTCGGGACACCGATTGAGTTTAATTtc                                                                                          >  1:561787/1‑140 (MQ=255)

                           ttttGACGCCAGCGTGCGTTGCACGATGCCCTGATTTGTACACCAGTAAAAGGTGTTCACCAGAATCAAACCGGTAAATGCCGCGCCAATCGGCAAGGGATCGGTCGGGACACCGATTGAGTTTAATTTCTCGGCGTGaa                                                                                <  1:8107/140‑1 (MQ=255)

                           ttttGACGCCAGCGTGCGTTGCACGATGCCCTGATTTGTACACCAGTAAAAGGTGTTCACCAGAATCAAACCGGTAAATGCCGCGCCAATCGGCAAGGGATCGGTCGGGACACCGATTGAGTTTAATTTCTCGGCGTGaa                                                                                <  2:259052/140‑1 (MQ=255)

                           ttttGACGCCAGCGTGCGTTGCACGATGCCCTGATTTGTACACCAGTAAAAGGTGTTCACCAGAATCAAACCGGTAAATGCCGCGCCAATCGGCAAGGGATCGGTCGGGACACCGATTGAGTTTAATTTCTCGGCGTGaa                                                                                <  2:162595/140‑1 (MQ=255)

                           ttttGACGCCAGCGTGCGTTGCACGATGCCCTGATTTGTACACCAGTAAAAGGTGTTCACCAGAATCAAACCGGTAAATGCCGCGCCAATCGGCAAGGGATCGGTCGGGACACCGATTGAGTTTAATTTCTCGGCGTGaa                                                                                <  1:806684/140‑1 (MQ=255)

                                            gtTGCACGATGCCCTGATTTGTACACCAGTAAAAGGTGTTCACCAGAATCAAACCGGTAAATGCCGCGCCAATCGGCAAGGGATCGGTCGGGACACCGATTGAGTTTAATTTCTCGGCGTGAACGGTGGTGAGTTGCTCa                                                               <  1:207186/140‑1 (MQ=255)

                                                 aCGATGCCCTGATTTGTACACCAGTAAAAGGTGTTCACCAGAATCAAACCGGTAAATGCCGCGCCAATCGGCAAGGGATCGGTCGGGACACCGATTGAGTTTAATTTCTCGGCGTGAACGGTGGTGAGTTGCTCAATGcc                                                          <  2:497786/140‑1 (MQ=255)

                                                   gATGCCCTGATTTGTACACCAGTAAAAGGTGTTCACCAGAATCAAACCGGTAAATGCCGCGCCAATCGGCAAGGGATCGGTCGGGACACCGATTGAGTTTAATTTCTCGGCGTGAACGGTGGTGAGTTGCTCAATGcc                                                          <  1:611900/138‑1 (MQ=255)

                                                   gATGCCCTGATTTGTACACCAGTAAAAGGTGTTAACCAGAATCAAACCGGTAAATGCCGCGCCAATCGGCAAGGGATCGGTCGGGACACCGATTGAGTTTAATTTCTCGGCGTGAACGGTGGTGAGTTGCTCAATGcc                                                          >  2:611900/1‑138 (MQ=255)

                                                           gATTTGTACACCAGTAAAAGGTGTTCACCAGAATCAAACCGGTAAATGCCGCGCCAATCGGCAAGGGATCGGTCGGGACACCGATTGAGTTTAATTTCTCGGCGTGAACGGTGGTGAGTTGCTCAATGCCCTGCATAAAg                                                <  2:1101599/140‑1 (MQ=255)

                                                                  acacCAGTAAAAGGTGTTCACCAGAATCAAACCGGTAAATGCCGCGCCAATCGGCAAGGGATCGGTCGGGACACCGATTGAGTTTAATTTCTCGGCGTGAACGGTGGTGAGTTGCTCAATGCCCTGCATAAAGCTGCCCt                                         >  1:1122418/1‑140 (MQ=255)

                                                                      cAGTAAAAGGTGTTCACCAGAATCAAACCGGTAAATGCCGCGCCAATCGGCAAGGGATCGGTCGGGACACCGATTGAGTTTAATTTCTCGGCGTGAACGGTGGTGAGTTGCTCAATGCCCTGCATAAAGCTGCCCTTGcc                                     >  2:582068/1‑140 (MQ=255)

                                                                         tAAAAGGTGTTCACCAGAATCAAACCGGTAAATGCCGCGCCAATCGGCAAGGGATCGGTCGGGACACCGATTGAGTTTAATTTCTCGGCGTGAACGGTGGTGAGTTGCTCAATGCCCTGCATAAAGCTGCCCTTGCCCAt                                  >  1:235314/1‑140 (MQ=255)

                                                                         tAAAAGGTGTTCACCAGAATCAAACCGGTAAATGCCGCGCCAATCGGCAAGGGATCGGTCGGGACACCGATTGAGTTTAATTTCTCGGCGTGAACGGTGGTGAGTTGCTCAATGCCCTGCATAAAGCTGCCCTTGCCCAt                                  >  1:1197647/1‑140 (MQ=255)

                                                                           aaaGGTGTTCACCAGAATCAAACCGGTAAATGCCGCGCCAATCGGCAAGGGATCGGTCGGGACACCGATTGAGTTTAATTTCTCGGCGTGAACGGTGGTGAGTTGCTCAATGCCCTGCATAAAGCTGCCCTTGCCCATcg                                >  1:361371/1‑140 (MQ=255)

                                                                                 gtTCACCAGAATCAAACCGGTAAATGCCGCGCCAATCGGCAAGGGATCGGTCGGGACACCGATTGAGTTTAATTTCTCGGCGTGAACGGTGGTGAGTTGCTCAATGCCCTGCATAAAGCTGCCCTTGCCCATCGCGATTa                          >  2:685742/1‑140 (MQ=255)

                                                                                 gtTCACCAGAATCAAACCGGTAAATGCCGCGCCAATCGGCAAGGGATCGGTCGGGACACCGATTGAGTTTAATTTCTCGGCGTGAACGGTGGTGAGTTGCTCAATGCCCTGCATAAAGCTGCCCTTGCCCATCGCGATTa                          <  2:1122418/140‑1 (MQ=255)

                                                                                 gtTCACCAGAATCAAACCGGTAAATGCCGCGCCAATCGGCAAGGGATCGGTCGGGACACCGATTGAGTTTAATTTCTCGGCGTGAACGGTGGTGAGTTGCTCAATGCCCTGCATAAAGCTGCCCTTGCCCATCGCGATTa                          >  2:508185/1‑140 (MQ=255)

                                                                                  ttCACCAGAATCAAACCGGTAAATGCCGCGCCAATCGGCAAGGGATCGGTCGGGACACCGATTGAGTTTAATTTCTCGGCGTGAACGGTGGTGAGGTGCTCAATGCCCTGCATAAAGCTGCCCTTGCCCATCGCGATTAg                         >  1:197080/1‑140 (MQ=255)

                                                                                  ttCACCAGAATCAAACCGGTAAATGCCGCGCCAATCGGCAAGGGATCGGTCGGGACACCGATTGAGTTTAATTTCTCGGCGTGAACGGTGGCGAGTTGCTCAATGCCCTGCATAAAGCTGCCCTTGCCCATCGCGATTAg                         >  1:224974/1‑140 (MQ=255)

                                                                                   tCACCAGAATCAAACCGGTAAATGCCGCGCCAATCGGCAAGGGATCGGTCGGGACACCGATTGAGTTTAATTTCTCGGCGTGAACGGTGGTGAGTTGCTCAATGCCCTGCATAAAGCTGCCCTTGCCCATCGCGATTa                          >  2:133976/1‑138 (MQ=255)

                                                                                   tCACCAGAATCAAACCGGTAAATGCCGCGCCAATCGGCAAGGGATCGGTCGGGACACCGATTGAGTTTAATTTCTCGGCGTGAACGGTGGTGAGTTGCTCAATGCCCTGCATAAAGCTGCCCTTGCCCATCGCGATTa                          <  1:133976/138‑1 (MQ=255)

                                                                                      ccAGAATCAAACCGGTAAATGCCGCGCCAATCGGCAAGGGATCGGTCGGGACACCGATTGAGTTTAATTTCTCGGCGTGAACGGTGGTGAGTTGCTCAATGCCCTGCATAAAGCTGCCCTTGCCCATCGCGATTAGGCCa                     <  2:928600/140‑1 (MQ=255)

                                                                                              aaaCCGGTAAATGCCGCGCCAATCGGCAAGGGATCGGTCGGGACACCGATTGAGTTTAATTTCTCGGCGTGAACGGTGGTGAGTTGCTCAATGCCCTGCATAAAGCTGCCCTTGCCCATCGCGATTAGGTCAAATACCgg             <  1:582068/140‑1 (MQ=255)

                                                                                              aaaCCGGTAAATGCCGCGCCAATCGGCAAGGGATCGGTCGGGACACCGATTGAGTTTAATTTCTCGGCGTGAACGGTGGTGAGTTGCTCAATGCCCTGCATAAAGCTGCCCTTGCCCATCGCGATTAGGCCAAATACCgg             <  2:1069929/140‑1 (MQ=255)

                                                                                              aaaCCGGTAAATGCCGCGCCAATCGGCAAGGGATCGGTCGGGACACCGATTGAGTTTAATTTCTCGGCGTGAACGGTGGTGAGTTGCTCAATGCCCTGCATAAAGCTGCCCTTGCCCATCGCGATTAGGCCAAATACCgg             <  1:508185/140‑1 (MQ=255)

                                                                                              aaaCCGGTAAATGCCGCGCCAATCGGCAAGGGATCGGTCGGGACACCGATTGAGTTTAATTTCTCGGCGTGAACGGTGGTGAGTTGCTCAATGCCCTGCATAAAGCTGCCCTTGCCCATCGCGATTAGGCCAAATACCgg             <  1:685742/140‑1 (MQ=255)

                                                                                               aaCCGGTAAATGCCGCGCCAATCGGCAAGGGATCGGTCGGGACACCGATTGAGTTTAATTTCTCGGCGTGAACGGTGGTGAGTTGCTCAATGCCCTGCATAAAGCTGCCCTTGCCCATCGCGATTAGGCCAAATACCGGc            >  1:329872/1‑140 (MQ=255)

                                                                                                    gTAAATGCCGCGCCAATCGGCAAGGGATCGGTCGGGACACCGATTGAGTTTAATTTCTCGGCGTGAACGGTGGTGAGTTGCTCAATGCCCTGCATAAAGCTGCCCTTGCCCATCGCGATTAGGCCAAATACCGGCACCAt       >  2:610341/1‑140 (MQ=255)

                                                                                                         tGCCGCGCCAATCGGCAAGGGATCGGTCGGGACACCGATTGAGTTTAATTTCTCGGCGTGAACGGTGGTGAGTTGCTCAATGCCCTGCATAAAGCTGCCCTTGCCCATCGCGATTAGGCCAAATACCGGCACCATCAAcc  >  2:1152228/1‑140 (MQ=255)

CGCCCCCTTTTGCCCTTCCGCCAGGCTTTTTGACGCCAGCGTGCGTTGCACGATGCCCTGATTTGTACACCAGTAAAAGGTGTTCACCAGAATCAAACCGGTAAATGCCGCGCCAATCGGCAAGGGATCGGTCGGGCCACCGATTGAGTTTAATTTCTCGGCGTGAACGGTGGTGAGTTGCTCAATGCCCTGCATAAAGCTGCCCTTGCCCATCGCGATTAGGCCAAATACCGGCACCATCAACC  >  NC_000913/3859271‑3859515

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A