Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F28 I1 R1 112 94.0 3211786 99.3% 3189303 138.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,192,296 T→C K114E (AAA→GAA)  thiG ← 1‑deoxy‑D‑xylulose 5‑phosphate:thiol sulfurtransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,192,2960TC100.0% 244.9 / NA 68K114E (AAA→GAA) thiG1‑deoxy‑D‑xylulose 5‑phosphate:thiol sulfurtransferase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (41/27);  total (41/27)

ATTCGAGCCAATCGGCGCGCCGAGCGGCATCACCGCTGCACAGCCGACTTCTTCCAGACGTTTACACAATACCGGATCGGCCCCGCAGTAAGGCAGCACGACAAATCCCTGTTGTACCAGCGTTTCGGCGGCTTTCAGGGTTTCGATGGGATCGGGCAACAGCCAGCGGGCGTCAGGGTGAATCTCTAATTTTAACCAGTTTGTGCCTAACGCTTCACGAGCCAGATGGGCGGCGAAAATGGCTTCTTCCGCTGTTTTCGCCCCGG  >  NC_000913/4192162‑4192427
                                                                                                                                      |                                                                                                                                   
aTTCGAGCCAATCAGCGCGCCGAGCGGCATCACCGCTGCACAGCCGACTTCTTCCAGACGTTTACACAATACCGGATCGGCCCCGCAGTAAGGCAGCACGACAAATCCCTGTTGTACCAGCGTTTCGGCGGCTTCCAggg                                                                                                                                >  2:1210915/1‑140 (MQ=255)
 ttCGAGCCAATCGGCGCGCCGAGCGGCATCACCGCTGCACAGCCGACTTCTTCCAGACGTTTACACAATACCGGATCGGCCCCGCAGTAAGGCAGCACGACAAATCCCTGTTGTACCAGCGTTTCGGCGGCTTCCAGGGt                                                                                                                               <  1:557704/140‑1 (MQ=255)
      gCCAATCGGCGCGCCGAGCGGCATCACCGCTGCACAGCCGACTTCTTCCAGACGTTTACACAATACCGGATCGGCCCCGCAGTAAGGCAGCACGACAAATCCCTGTTGTACCAGCGTTTCGGCGGCTTCCAGGGTTTCGa                                                                                                                          >  1:378371/1‑140 (MQ=255)
      gCCAATCGGCGCGCCGAGCGGCATCACCGCTGCACAGCCGACTTCTTCCAGACGTTTACACAATACCGGATCGGCCCCGCAGTAAGGCAGCACGACAAATCCCTGTTGTACCAGCGTTTCGGCGGCTTCCAGGGTTTCGa                                                                                                                          >  2:1553600/1‑140 (MQ=255)
      gCCAATCGGCGCGCCGAGCGGCATCACCGCTGCACAGCCGACTTCTTCCAGACGTTTACACAATACCGGATCGGCCCCGCAGTAAGGCAGCACGACAAATCCCTGTTGTACCAGCGTTTCGGCGGCTTCCAGGGTTTCGa                                                                                                                          >  1:876561/1‑140 (MQ=255)
      gCCAATCGGCGCGACGAGCGGCATCACCGCTGCACAGCCGACTTCTTCCAGACGTTTACACAATACCGGATCGGCCCCGCAGTAAGGCAGCACGACAAATCCCTGTTGTACCAGCGTTTCGGCGGCTTCCAggctgtctc                                                                                                                          >  2:828166/1‑133 (MQ=255)
         aaTCGGCGCGCCGAGCGGCATCACCGCTGCACAGCCGACTTCTTCCAGACGTTTACACAATACCGGATCGGCCCCGCAGTAAGGCAGCACGACAAATCCCTGTTGTACCAGCGTTTCGGCGGCTTCCAGGGTTTCGATgg                                                                                                                       <  1:1555980/140‑1 (MQ=255)
         aaTCGGCGCGCCGAGCGGCATCACCGCTGCACAGCCGACTTCTTCCAGACGTTTACACAATACCGGATCGGCCCCGCAGTAAGGCAGCACGACAAATCCCTGTTGTACCAGCGTTTCGGCGGCTTCCAGGGTTTCGATgg                                                                                                                       <  2:940480/140‑1 (MQ=255)
         aaTCGGCGCGCCGAGCGGCATCACCGCTGCACAGCCGACTTCTTCCAGACGTTTACACAATACCGGATCGGCCCCGCAGTAAGGCAGCACGACAAATCCCTGTTGTACCAGCGTTTCGGCGGCTTCCAGGGTTTCGATgg                                                                                                                       <  1:1549583/140‑1 (MQ=255)
          aTCGGCGCGCCGAGCGGCATCACCGCTGCACAGCCGACTTCTTCCAGACGTTTACACAATACCGGATCGGCCCCGCAGTAAGGCAGCACGACAAATCCCTGTTGTACCAGCGTTTCGGCGGCTTCCAGGGTTTCGATggg                                                                                                                      >  1:1209897/1‑140 (MQ=255)
             ggCGCGCCGAGCGGCATCACCGCTGCACAGCCGACTTCTTCCAGACGTTTACACAATACCGGATCGGCCCCGCAGTAAGGCAGCACGACAAATCCCTGTTGTACCAGCGTTTCGGCGGCTTCCAGGGTTTCGATGGGATc                                                                                                                   <  1:745228/140‑1 (MQ=255)
                                 cGCTGCACAGCCGACTTCTTCCAGACGTTTACACAATACCGGATCGGCCCCGCAGTAAGGCAGCACGACAAATCCCTGTTGTACCAGCGTTTCGGCGGCTTCCAGGGTTTCGATGGGATCGGGCAACAGCCAGCGGGCGt                                                                                               <  1:1553600/140‑1 (MQ=255)
                                         aGCCGACTTCTTCCAGACGTTTACACAATACCGGATCGGCCCCGCAGTAAGGCAGCACGACAAATCCCTGTTGTACCAGCGTTTCGGCGGCTTCCAGGGTTTCGATGGGATCGGGCAACAGCCAGCGGGCGTCAGGGTGa                                                                                       <  2:584631/140‑1 (MQ=255)
                                           ccGACTTCTTCCAGACGTTTACACAATACCGGATCGGCCCCGCAGTAAGGCAGCACGACAAATCCCTGTTGTACCAGCGTTTCGGCGGCTTCCAGGGTTTCGATGGGATCGGGCAACAGCCAGCGGGCGTCAGGGTGAAt                                                                                     >  2:1181104/1‑140 (MQ=255)
                                             gACTTCTTCCAGACGTTTACACAATACCGGATCGGCCCCGCAGTAAGGCAGCACGACAAATCCCTGTTGTACCAGCGTTTCGGCGGCTTCCAGGGTTTCGATGGGATCGGGCAACAGCCAGCGGGCGTCAGGGTGAAtct                                                                                   <  2:876561/140‑1 (MQ=255)
                                              aCTTCTTCCAGACGTTTACACAATACCGGATCGGCCCCGCAGTAAGGCAGCACGACAAATCCCTGTTGTACCAGCGTTTCGGCGGCTTCCAGGGTTTCGATGGGATCGGGCAACAGCCAGCGGGCGTCAGGGTGAAtcac                                                                                  >  2:1090044/1‑138 (MQ=255)
                                                  cttcCAGACGTTTACACAATACCGGATCGGCCCCGCAGTAAGGCAGCACGACAAATCCCTGTTGTACCAGCGTTTCGGCGGCTTCCAGGGTTTCGATGGGATCGGGCAACAGCCAGCGGGCGTCAGGGTGAATCTCTAAt                                                                              <  2:198658/140‑1 (MQ=255)
                                                        gACGTTTACACAATACCGGATCGGCCCCGCAGTAAGGCAGCACGACAAATCCCTGTTGTACCAGCGTTTCGGCGGCTTCCAGGGTTTCGATGGGATCGGGCAACAGCCAGCGGGCGTCAGGGTGAATCTCTAATTTTAAc                                                                        <  1:877683/140‑1 (MQ=255)
                                                        gACGTTTACACAATACCGGATCGGCCCCGCAGTAAGGCAGCACGACAAATCCCTGTTGTACCAGCGTTTCGGCGGCTTCCAGGGTTTCGATGGGATCGGGCAACAGCCAGCGGGCGTCAGGGTGAATCTCTAATTTTAAc                                                                        <  2:1209897/140‑1 (MQ=255)
                                                        gACGTTTACACAATACCGGATCGGCCCCGCAGTAAGGCAGCACGACAAATCCCTGTTGTACCAGCGTTTCGGCGGCTTCCAGGGTTTCGATGGGATCGGGCAACAGCCAGCGGGCGTCAGGGTGAATCTCTAATTTTAAc                                                                        <  2:1451156/140‑1 (MQ=255)
                                                             ttACACAATACCGGATCGGCCCCGCAGTAAGGCAGCACGACAAATCCCTGTTGTACCAGCGTTTCGGCGGCTTCCAGGGTTTCGATGGGATCGGGCAACAGCCAGCGGGCGTCAGGGTGAATCTCTAATTTTAACCAGtt                                                                   >  1:761216/1‑140 (MQ=255)
                                                              tACACAATACCGGATCGGCCCCGCAGTAAGGCAGCACGACAAATCCCTGTTGTACCAGCGTTTCGGCGGCTTCCAGGGTTTCGATGGGATCGGGCAACAGCCAGCGGGCGTCAGGGTGAAtctc                                                                                  >  2:105147/1‑124 (MQ=255)
                                                              tACACAATACCGGATCGGCCCCGCAGTAAGGCAGCACGACAAATCCCTGTTGTACCAGCGTTTCGGCGGCTTCCAGGGTTTCGATGGGATCGGGCAACAGCCAGCGGGCGTCAGGGTGAAtctc                                                                                  <  1:105147/124‑1 (MQ=255)
                                                              tACACAATACCGGATCGGCCCCGCAGTAAGGCAGCACGACAAATCCCTGTTGTACCAGCGTTTCGGCGGCTTCCAGGGTTTCGATGGGATCGGGCAACAGCCAGCGGGCGTCAGGGTGAATCTCTAATTTTAACCAGttt                                                                  <  1:1210915/140‑1 (MQ=255)
                                                                     tACCGGATCGGCCCCGCAGTAAGGCAGCACGACAAATCCCTGTTGTACCAGCGTTTCGGCGGCTTCCAGGGTTTCGATGGGATCGGGCAACAGCCAGCGGGCGTCAGGGTGAATCTCTAATTTTAACCAGTTTGTGCCTa                                                           >  2:1147370/1‑140 (MQ=255)
                                                                     tACCGGATCGGCCCCGCAGTAAGGCAGCACGACAAATCCCTGTTGTACCAGCGTTTCGGCGGCTTCCAGGGTTTCGATGGGATCGGGCAACAGCCAGCGGGCGTCAGGGTGAATCTCTAATTTTAACCAGTTTGTGCCTa                                                           >  1:1065765/1‑140 (MQ=255)
                                                                     tACCGGATCGGCCCCGCAGTAAGGCAGCACGACAAATCCCTGTTGTACCAGCGTTTCGGCGGCTTCCAGGGTTTCGATGGGATCGGGCAACAGCCAGCGGGCGTCAGGGTGAATCTCTAATTTTAACCAGTTTGTGCCTa                                                           >  2:1503037/1‑140 (MQ=255)
                                                                      aCCGGATCGGCCCCGCAGTAAGGCAGCACGACAAATCCCTGTTGTACCAGCGTTTCGGCGGCTTCCAGGGTTTCGATGGGATCGGGCAACAGCCAGCGGGCGTCAGGGTGAATCTCTAATTTTAACCAGTTTGTGCCTaa                                                          <  1:1147370/140‑1 (MQ=255)
                                                                        cGGATCGGCCCCGCAGTAAGGCAGCACGACAAATCCCTGTTGTACCAGCGTTTCGGCGGCTTCCAGGGTTTCGATGGGATCGGGCAACAGCCAGCGGGCGTCAGGGTGAATCTCTAATTTTAACCAGTTTGTGCCTAACg                                                        >  1:1351937/1‑140 (MQ=255)
                                                                          gATCGGCCCCGCAGTAAGGCAGCACGACAAATCCCTGTTGTACCAGCGTTTCGGCGGCTTCCAGGGTTTCGATGGGATCGGGCAACAGCCAGCGGGCGTCAGGGTGAATCTCTAATTTTAACCAGTTTGTGCCTAACGCt                                                      >  2:430063/1‑140 (MQ=255)
                                                                          gATCGGCCCCGCAGTAAGGCAGCACGACAAATCCCTGTTGTACCAGCGTTTCGGCGGCTTCCAGGGTTTCGATGGGATCGGGCAACAGCCAGCGGGCGTCAGGGTGAATCTCTAATTTTAACCAGTTTGTGCCTAACGCt                                                      >  2:385232/1‑140 (MQ=255)
                                                                           aTCGGCCCCGCAGTAAGGCAGCACGACAAATCCCTGTTGTACCAGCGTTTCGGCGGCTTCCAGGGTTTCGATGGGATCGGGCAACAGCCAGCGGGCGTCAGGGTGAATCTCTAATTTTAACCAGTTTGTGcc                                                             <  1:763415/132‑1 (MQ=255)
                                                                           aTCGGCCCCGCAGTAAGGCAGCACGACAAATCCCTGTTGTACCAGCGTTTCGGCGGCTTCCAGGGTTTCGATGGGATCGGGCAACAGCCAGCGGGCGTCAGGGTGAATCTCTAATTTTAACCAGTTTGTGcc                                                             <  1:215579/132‑1 (MQ=255)
                                                                           aTCGGCCCCGCAGTAAGGCAGCACGACAAATCCCTGTTGTACCAGCGTTTCGGCGGCTTCCAGGGTTTCGATGGGATCGGGCAACAGCCAGCGGGCGTCAGGGTGAATCTCTAATTTTAACCAGTTTGTGcc                                                             >  2:763415/1‑132 (MQ=255)
                                                                           aTCGGCCCCGCAGTAAGGCAGCACGACAAATCCCTGTTGTACCAGCGTTTCGGCGGCTTCCAGGGTTTCGATGGGATCGGGCAACAGCCAGCGGGCGTCAGGGTGAATCTCTAATTTTAACCAGTTTGTGcc                                                             >  2:215579/1‑132 (MQ=255)
                                                                           aTCGGCCCCGCAGTAAGGCAGCACGACAAATCCCTGTTGTACCAGCGTTTCGGCGGCTTCCAGGGTTTCGATGGGATCGGGCAACAGCCAGCGGGCGTCAGGGTGAATCTCTAATTTTAACCAGTTTGTGCCTAACGCtt                                                     >  1:1302735/1‑140 (MQ=255)
                                                                               gCCCCGCAGTAAGGCAGCACGACAAATCCCTGTTGTACCAGCGTTTCGGCGGCTTCCAGGGTTTCGATGGGATCGGGCAACAGCCAGCGGGCGTCATGGTGAATCTCTAATTTTAACCAGTTTGTGCCTAACGCTTCACg                                                 >  1:1416817/1‑140 (MQ=255)
                                                                               gCCCCGCAGTAAGGCAGCACGACAAATCCCTGTTGTACCAGCGTTTCGGCGGCTTCCAGGGTTTCGATGGGATCGGGCAACAGCCAGCGGGCGTCAGGGTGAATCTCTAATTTTAACCAGttt                                                                  >  1:834714/1‑123 (MQ=255)
                                                                               gCCCCGCAGTAAGGCAGCACGACAAATCCCTGTTGTACCAGCGTTTCGGCGGCTTCCAGGGTTTCGATGGGATCGGGCAACAGCCAGCGGGCGTCAGGGTGAATCTCTAATTTTAACCAGttt                                                                  <  2:834714/123‑1 (MQ=255)
                                                                               gCCCCGCAGTAAGGCAGCACGACAAATCCCTGTTGTACCAGCGTTTCGGCGGCTTCCAGGGTTTCGATGGGATCGGGCAACAGCCAGCGGGCGTCAGGGTGAATCTCTAATTTTAACCAGTTTGTGCCTAACGCTTCAcc                                                 >  1:955573/1‑139 (MQ=255)
                                                                               gCCCCGCAGTAAGGCAGCACGACAAATCCCTGTTGTACCAGCGTTTCGGCGGCTTCCAGGGTTTCGATGGGATCGGGCAACAGCCAGCGGGCGTCAGGGTGAATCTCTAATTTTAACCAGTTTGTGCCTAACGCTTCACg                                                 >  2:842087/1‑140 (MQ=255)
                                                                               gCCCCGCAGTAAGGCAGCACGACAAATCCCTGTTGTACCAGCGTTTCGGCGGCTTCCAGGGTTTCGATGGGATCGGGCAACAGCCAGCGGGCGTCAGGGTGAATCTCTAATTTTAACCAGTTTGTGCCTAACGCTTCACg                                                 >  1:16428/1‑140 (MQ=255)
                                                                               gCCCCGCAGTAAGGCAGCACGACAAATCCCTGTTGTACCAGCGTTTCGGCGGCTTCCAGGGTTTCGATGGGATCGGGCAACAGCCAGCGGGCGTCAGGGTGAATCTCTAATTTTAACCAGTTTGTGCCTAACGCTTCACg                                                 >  2:1507486/1‑140 (MQ=255)
                                                                                          aGGCAGCACGACAAATCCCTGTTGTACCAGCGTTTCGGCGGCTTCCAGGGTTTCGATGGGATCGGGCAACAGCCAGCGGGCGTCAGGGTGAATCTCTAATTTTAACCAGTTTGTGCCTAACGCTTCACGAGCCAGATggg                                      >  1:828948/1‑140 (MQ=255)
                                                                                          aGGCAGCACGACAAATCCCTGTTGTACCAGCGTTTCGGCGGCTTCCAGGGTTTCGATGGGATCGGGCAACAGCCAGCGGGCGTCAGGGTGAATCTCTAATTTTAACCAGTTTGTGCCTAACGCTTCACGAGCCAGATggg                                      >  1:568217/1‑140 (MQ=255)
                                                                                           ggCAGCACGACAAATCCCTGTTGTACCAGCGTTTCGGCGGCTTCCAGGGTTTCGATGGGATCGGGCAACAGCCAGCGGGCGTCAGGGTGAATCTCTAATTTTAACCAGTTTGTGCCTAACGCTTCACGAGCCAGATGggc                                     >  1:1595840/1‑140 (MQ=255)
                                                                                                caCGACAAATCCCTGTTGTACCAGCGTTTCGGCGGCTTCCAGGGTTTCGATGGGATCGGGCAACAGCCAGCGGGCGTCAGGGTGAATCTCTAATTTTAACCAGTTTGTGCCTAACGCTTCACGAGCCAGATGGGCGGCGa                                >  1:1084562/1‑140 (MQ=255)
                                                                                                caCGACAAATCCCTGTTGTACCAGCGTTTCGGCGGCTTCCAGGGTTTCGATGGGATCGGGCAACAGCCAGCGGGCGTCAGGGTGAATCTCTAATTTTAACCAGTTTGTGCCTAACGCTTCACGAGCCAGATGGGCGGCGa                                >  1:720728/1‑140 (MQ=255)
                                                                                                     cAAATCCCTGTTGTACCAGCGTTTCGGCGGCTTCCAGGGTTTCGATGGGATCGGGCAACAGCCAGCGGGCGTCAGGGTGAATCTCTAATTTTAACCAGTTTGTGCCTAACGCTTCACGAGCCAGATGGGCGGCGAAAATg                           <  1:842087/140‑1 (MQ=255)
                                                                                                                tgtACCAGCGTTTCGGCGGCTTCCAGGGTTTCGATGGGATCGGGCAACAGCCAGCGGGCGTCAGGGTGAATCTCTAATTTTAACCAGTTTGTGCCTAACGCTTCACGAGCCAGATGGGCGGCGAAAATGGCTTCTTCCGc                <  1:1181104/140‑1 (MQ=255)
                                                                                                                  tACCAGCGTTTCGGCGGCTTCCAGGGTTTCGATGGGATCGGGCAACAGCCAGCGGGCGTCAGGGTGAATCTCTAATTTTAACCAGTTTGTGCCTAACGCTTCACGAGCCAGATGGGCGGCGaaa                              >  2:339502/1‑124 (MQ=255)
                                                                                                                  tACCAGCGTTTCGGCGGCTTCCAGGGTTTCGATGGGATCGGGCAACAGCCAGCGGGCGTCAGGGTGAATCTCTAATTTTAACCAGTTTGTGCCTAACGCTTCACGAGCCAGATGGGCGGCGaaa                              <  1:339502/124‑1 (MQ=255)
                                                                                                                  tACCAGCGTTTCGGCGGCTTCCAGGGTTTCGATGGGATCGGGCAACAGCCAGCGGGCGTCAGGGTGAATCTCTAATTTTAACCAGTTTGTGCCTAACGCTTCACGAGCCAGATGGGCGGCGAAAATGGCTTCTTCCGCTg              >  1:1527246/1‑140 (MQ=255)
                                                                                                                  tACCAGCGTTTCGGCGGCTTCCAGGGTTTCGATGGGATCGGGCAACAGCCAGCGGGCGTCAGGGTGAATCTCTAATTTTAACCAGTTTGTGCCTAACGCTTCACGAGCCAGATGGGCGGCGAAAATGGCTTCTTCCGCTg              >  1:402249/1‑140 (MQ=255)
                                                                                                                    ccAGCGTTTCGGCGGCTTCCAGGGTTTCGATGGGATCGGGCAACAGCCAGCGGGCGTCAGGGTGAATCTCTAATTTTAACCAGTTTGTGCCTAACGCTTTACGAGCCAGATGGGCGGCGAAAATGGCTTCTTCCGCTGtt            >  1:541090/1‑140 (MQ=255)
                                                                                                                    ccAGCGTTTCGGCGGCTTCCAGGGTTTCGATGGGATCGGGCAACAGCCAGCGGGCGTCAGGGTGAATCTCTAATTTTAACCAGTTTGTGCCTAACGCTTCACGAGCCAGATGGGCGGCGAAAATGGCTTCTTCCGCTGtt            >  1:256948/1‑140 (MQ=255)
                                                                                                                       gCGTTTCGGCGGCTTCCAGGGTTTCGATGGGATCGGGCAACAGCCAGCGGGCGTCAGGGTGAATCTCTAATTTTAACCAGTTTGTGCCTAACGCTTCACGAGCCAGATGGGCGGCGAAAATGGCTTCTTCCGCTGTTTTc         >  1:13522/1‑140 (MQ=255)
                                                                                                                       gCGTTTCGGCGGCTTCCAGGGTTTCGATGGGATCGGGCAACAGCCAGCGGGCGTCAGGGTGAATCTCTAATTTTAACCAGTTTGTGCCTAACGCTTCACGAGCCAGATGGGCGGCGAAAATGGCTTCTTCCGCTGTTTTc         >  2:912798/1‑140 (MQ=255)
                                                                                                                        cGTTTCGGCGGCTTCCAGGGTTTCGATGGGATCGGGCAACAGCCAGCGGGCGTCAGGGTGAATCTCTAATTTTAACCAGTTTGTGCCTAACGCTTCACGAGCCAGATGGGCGGCGAAAATGGCTTCTTCCGCTGTTTTCg        >  2:490042/1‑140 (MQ=255)
                                                                                                                        cGTTTCGGCGGCTTCCAGGGTTTCGATGGGATCGGGCAACAGCCAGCGGGCGTCAGGGTGAATCTCTAATTTTAACCAGTTTGTGCCTAACGCTTCACGAGCCAGATGGGCGGCGAAAATGGCTTCTTCCGCTGTTTTCg        >  2:147790/1‑140 (MQ=255)
                                                                                                                         gTTTCGGCGGCTTCCAGGGTTTCGATGGGATCGGGCAACAGCCAGCGGGCGTCAGGGTGAATCTCTAATTTTAACCAGTTTGTGCCTAACGCTTCACGAGCCAGATGGGCGGCGAAAATGGCTTCTTCCGCTGTTTTCGc       <  2:1084562/140‑1 (MQ=255)
                                                                                                                         gTTTCGGCGGCTTCCAGGGTTTCGATGGGATCGGGCAACAGCCAGCGGGCGTCAGGGTGAATCTCTAATTTTAACCAGTTTGTGCCTAACGCTTCACGAGCCAGATGGGCGGCGAAAATGGCTTCTTCCGCTGTTTTCGc       <  2:828948/140‑1 (MQ=255)
                                                                                                                          tttCGGCGGCTTCCAGGGTTTCGATGGGATCGGGCAACAGCCAGCGGGCGTCAGGGTGAATCTCTAATTTTAACCAGTTTGTGCCTAACGCTTCACGAGCCAGATGGGCGGCGAAAATGGCTTCTTCCg                 <  2:1113607/129‑1 (MQ=255)
                                                                                                                          tttCGGCGGCTTCCAGGGTTTCGATGGGATCGGGCAACAGCCAGCGGGCGTCAGGGTGAATCTCTAATTTTAACCAGTTTGTGCCTAACGCTTCACGAGCCAGATGGGCGGCGAAAATGGCTTCTTCCg                 >  1:1113607/1‑129 (MQ=255)
                                                                                                                           ttCGGCGGCTTCCAGGGTTTCGATGGGATCGGGCAACAGCCAGCGGGCGTCAGGGTGAATCTCTAATTTTAACCAGTTTGTGCCTAACGCTTCACGAGCCAGATGGGCGGCGAAAATGGCTTCTTCCGCTGTTTTCGccc     <  2:1065765/140‑1 (MQ=255)
                                                                                                                            tCGGCGGCTTCCAGGGTTTCGATGGGATCGGGCAACAGCCAGCGGGCGTCAGGGTGAATCTCTAATTTTAACCAGTTTGTGCCTAACGCTTCACGAGCCAGATGGGCGGCGAAAATGGCTTCTTCCGCTGTTTTCGcccc    >  1:767413/1‑140 (MQ=255)
                                                                                                                              ggcggcTTCCAGGGTTTCGATGGGATCGGGCAACAGCCAGCGGGCGTCAGGGTGAATCTCTAATTTTAACCAGTTTGTGCCTAACGCTTCACGAGCCAGATGGGCGGCGAAAATGGCTTCTTCCGCTGTTTTCGCCCCgg  <  2:1351937/140‑1 (MQ=255)
                                                                                                                              ggcggcTTCCAGGGTTTCGATGGGATCGGGCAACAGCCAGCGGGCGTCAGGGTGAATCTCTAATTTTAACCAGTTTGTGCCTAACGCTTCACGAGCCAGATGGGCGGCGAAAATGGCTTCTTCCGCTGTTTTCGCCCCgg  <  1:1507486/140‑1 (MQ=255)
                                                                                                                                      |                                                                                                                                   
ATTCGAGCCAATCGGCGCGCCGAGCGGCATCACCGCTGCACAGCCGACTTCTTCCAGACGTTTACACAATACCGGATCGGCCCCGCAGTAAGGCAGCACGACAAATCCCTGTTGTACCAGCGTTTCGGCGGCTTTCAGGGTTTCGATGGGATCGGGCAACAGCCAGCGGGCGTCAGGGTGAATCTCTAATTTTAACCAGTTTGTGCCTAACGCTTCACGAGCCAGATGGGCGGCGAAAATGGCTTCTTCCGCTGTTTTCGCCCCGG  >  NC_000913/4192162‑4192427

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A