Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F28 I1 R1 224 87.5 2960670 99.3% 2939945 138.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,200,096 A→G intergenic (+2/‑185) yjaG → / → hupA conserved protein YjaG/DNA‑binding protein HU‑alpha

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,200,0960AG100.0% 241.1 / NA 72intergenic (+2/‑185)yjaG/hupAconserved protein YjaG/DNA‑binding protein HU‑alpha
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (39/33);  total (39/33)

AGAATGGGACATTCAGTGGGAAATATTCCGACTTTTAGCTGAGTGCGAAGAACGCGATATCGAGCTGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTC  >  NC_000913/4199959‑4200231
                                                                                                                                         |                                                                                                                                       
aGAATGGGACATTCAGTGGGAAATATTCCGACTTTTAGCTGAGTGCGAAGAACGCGATATCGAGCTGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGGcc                                                                                                                                       >  2:476828/1‑140 (MQ=255)
   aTGGGACATTCAGTGGGAAATATTCCGACTTTTAGCTGAGTGCGAAGAACGCGATATCGAGCTGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGGCCAGa                                                                                                                                    >  1:598745/1‑140 (MQ=255)
   aTGGGACATTCAGTGGGAAATATTCCGACTTTTAGCTGAGTGCGAAGAACGCGATATCGAGCTGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGGCCAGa                                                                                                                                    >  2:839239/1‑140 (MQ=255)
   aTGGGACATTCAGTGGGAAATATTCCGACTTTTAGCTGAGTGCGAAGAACGCGATATCGAGCTGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGGCCAGa                                                                                                                                    >  2:1246799/1‑140 (MQ=255)
       gACATTCAGTGGGAAATATTCCGACTTTTAGCTGAGTGCGAAGAACGCGATATCGAGCTGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGGCCAGAAAAc                                                                                                                                <  1:405195/140‑1 (MQ=255)
           ttCAGTGGGAAATATTCCGACTTTTAGCTGAGTGCGAAGAACGCGATATCGAGCTGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGGCCAGAAAACGTGa                                                                                                                            >  1:268272/1‑140 (MQ=255)
            tCAGTGGGAAATATTCCGACTTTTAGCTGAGTGCGAAGAACGCGATATCGAGCTGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGGCCAGAAAACGTGAt                                                                                                                           >  2:1072058/1‑140 (MQ=255)
            tCAGTGGGAAATATTCCGACTTTTAGCTGAGTGCGAAGAACGCGATATCGAGCTGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGGCCAGAAAACGTGAt                                                                                                                           >  1:38586/1‑140 (MQ=255)
              aGTGGGAAATATTCCGACTTTTAGCTGAGTGCGAAGAACGCGATATCGAGCTGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGGCCAGAAAACGTGAttt                                                                                                                         <  1:890762/140‑1 (MQ=255)
              aGTGGGAAATATTCCGACTTTTAGCTGAGTGCGAAGAACGCGATATCGAGCTGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGGCCAGAAAACGTGAttt                                                                                                                         <  1:1246799/140‑1 (MQ=255)
                tGGGAAATATTCCGACTTTTAGCTGAGTGCGAAGAACGCGATATCGAGCTGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGGCCAGAAAACGTGATTTaa                                                                                                                       <  1:1047748/140‑1 (MQ=255)
                tGGGAAATATTCCGACTTTTAGCTGAGTGCGAAGAACGCGATATCGAGCTGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGGCCAGAAAACGTGATTTaa                                                                                                                       >  2:1479639/1‑140 (MQ=255)
                       tatTCCGACTTTTAGCTGAGTGCGAAGAACGCGATATCGAGCTGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGGCCAGAAAACGTGATTTAACGCCTGa                                                                                                                <  2:268272/140‑1 (MQ=255)
                        atTCCGACTTTTAGCTGAGTGCGAAGAACGCGATATCGAGCTGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGGCCAGAAAACGTGATTTAACGCCTGAt                                                                                                               >  2:857247/1‑140 (MQ=255)
                        atTCCGACTTTTAGCTGAGTGCGAAGAACGCGATATCGAGCTGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGGCCAGAAAACGTGATTTAACGCCTGAt                                                                                                               <  2:598745/140‑1 (MQ=255)
                            cGACTTTTAGCTGAGTGCGAAGAACGCGATACCGAGCTGACAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGGCCAGAAAACGTGATTTAACGCCTGATTTGt                                                                                                           <  1:1414719/140‑1 (MQ=255)
                             gACTTTTAGCTGAGTGCGAAGAACGCGATATCGAGCTGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGGCCAGAAAACGTGATTTAACGCCTGATTTGTc                                                                                                          <  2:1215540/140‑1 (MQ=255)
                              aCTTTTAGCTGAGTGCGAAGAACGCGATATCGAGCTGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGGCCAGAAAACGTGATTTAACGCCTGATTTGTCg                                                                                                         <  1:754882/140‑1 (MQ=255)
                                 tttAGCTGAGTGCGAAGAACGCGATATCGAGCTGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGGCCAGAAAACGTGATTTAACGCCTGATTTGTCGTAc                                                                                                      <  1:1400259/140‑1 (MQ=255)
                                   tAGCTGAGTGCGAAGAACGCGATATCGAGCTGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGGCCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCt                                                                                                    <  1:1318783/140‑1 (MQ=255)
                                      cTGAGTGCGAAGAACGCGATATCGAGCTGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGGCCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGa                                                                                                 <  1:476828/140‑1 (MQ=255)
                                          gTGCGAAGAACGCGATATCGAGCTGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGGCCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCt                                                                                             >  1:125527/1‑140 (MQ=255)
                                          gTGCGAAGAACGCGATATCGAGCTGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGGCCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCt                                                                                             >  1:1126843/1‑140 (MQ=255)
                                                   aCGCGATATCGAGCTGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGGCCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCg                                                                                    >  2:508303/1‑140 (MQ=255)
                                                         tatCGAGCTGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGGCCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGccc                                                                                 <  2:1297858/137‑1 (MQ=255)
                                                         tatCGAGCTGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGGCCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGccc                                                                                 >  1:1297858/1‑137 (MQ=255)
                                                            cGAGCTGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGGCCAGAAAACGTGATTTAATGCCTGATCTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTc                                                                           >  2:1034395/1‑140 (MQ=255)
                                                            cGAGCTGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGGCCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTc                                                                           <  2:38586/140‑1 (MQ=255)
                                                               gCTGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCAGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGGCCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTgg                                                                        >  2:690920/1‑140 (MQ=255)
                                                                 tGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGGCCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTc                                                                      <  2:787284/140‑1 (MQ=255)
                                                                   aTAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGGCCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTa                                                                    <  2:947421/140‑1 (MQ=255)
                                                                   aTAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAACAATAAGGCCAGAAAACGCGATTTAACGCCTGCTTTGTCGTACCTGGAGCCTTCCCTTTCGCCCCCCGTCTGGTCTa                                                                    >  1:261549/1‑140 (MQ=255)
                                                                             ttAGGGCAGACCTGCGTGAGGCGGGTGCGAGCAATATTGGTATAATTTTTCAGCAATAAGGCCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTc                                                                           >  2:49652/1‑123 (MQ=255)
                                                                             ttAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGGCCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTc                                                                           <  1:49652/123‑1 (MQ=255)
                                                                             ttAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGGCCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTa                                                                    >  2:36526/1‑130 (MQ=255)
                                                                             ttAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGGCCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTa                                                                    <  1:36526/130‑1 (MQ=255)
                                                                             ttAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGGCCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTggggg                                                          >  2:1013785/1‑140 (MQ=255)
                                                                                 ggCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGGCCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCAACATTTGGGGGGCGa                                                      >  2:540102/1‑140 (MQ=255)
                                                                                    aGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGGCCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTggg                                                            <  1:1193182/131‑1 (MQ=255)
                                                                                    aGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGGCCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTggg                                                            >  2:1193182/1‑131 (MQ=255)
                                                                                    aGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGGCCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGaaaa                                                   >  1:543407/1‑140 (MQ=255)
                                                                                      aCCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGGCCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGaaaaaa                                                 >  2:337764/1‑140 (MQ=255)
                                                                                      aCCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGGCCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGaaaaaa                                                 >  1:763655/1‑140 (MQ=255)
                                                                                       ccTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGGCCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGaaaaaaa                                                <  1:839239/140‑1 (MQ=255)
                                                                                           cGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGGCCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTgg                                            >  1:31922/1‑140 (MQ=255)
                                                                                           cGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGGCCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTgg                                            >  1:1240377/1‑140 (MQ=255)
                                                                                           cGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGGCCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTgg                                            >  2:623946/1‑140 (MQ=255)
                                                                                                ggCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGGCCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTgg                                            <  1:1379798/135‑1 (MQ=255)
                                                                                                ggCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGGCCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTgg                                            >  2:1379798/1‑135 (MQ=255)
                                                                                                ggCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGGCCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATc                                       >  2:1146435/1‑140 (MQ=255)
                                                                                                ggCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGGCCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATc                                       <  2:1240377/140‑1 (MQ=255)
                                                                                                ggCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGGCCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATc                                       >  2:330552/1‑140 (MQ=255)
                                                                                                 gCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGGCCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCg                                      <  1:1072058/140‑1 (MQ=255)
                                                                                                  cGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGGCCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCgg                                     <  2:31922/140‑1 (MQ=255)
                                                                                                  cGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGGCCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCgg                                     <  1:623946/140‑1 (MQ=255)
                                                                                                  cGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGGCCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCgg                                     <  1:508303/140‑1 (MQ=255)
                                                                                                    ggTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGGCCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTg                                   >  1:1175904/1‑140 (MQ=255)
                                                                                                     gTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGGCCAGAAAACGTGATTTAATGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGc                                  <  1:1034395/140‑1 (MQ=255)
                                                                                                     gTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGGCCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGc                                  <  2:1126843/140‑1 (MQ=255)
                                                                                                     gTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGGCCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCAACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGc                                  <  1:540102/140‑1 (MQ=255)
                                                                                                       gagaGCAATATTGGTATAATTTTTCAGCAATAAGGCCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgt                                <  2:543407/140‑1 (MQ=255)
                                                                                                       gagaGCAATATTGGTATAATTTTTCAGCAATAAGGCCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCgt                                <  2:125527/140‑1 (MQ=255)
                                                                                                            cAATATTGGTATAATTTTTCAGCAATAAGGCCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATg                           >  2:945725/1‑140 (MQ=255)
                                                                                                               tatTGGTATAATTTTTCAGCAATAAGGCCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAg                        >  2:1119467/1‑140 (MQ=255)
                                                                                                               tatTGGTATAATTTTTCAGCAATAAGGCCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAg                        <  1:330552/140‑1 (MQ=255)
                                                                                                                       taATTTTTCAGCAATAAGGCCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGc                >  1:872615/1‑140 (MQ=255)
                                                                                                                         aTTTTTCAGCAATAAGGCCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTa              >  2:877217/1‑140 (MQ=255)
                                                                                                                          tttttCAGCAATAAGGCCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTAt             <  1:857247/140‑1 (MQ=255)
                                                                                                                              tCAGCAATAAGGCCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTg         >  2:946874/1‑140 (MQ=255)
                                                                                                                               cAGCAATAAGGCCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTgg        >  1:590181/1‑140 (MQ=255)
                                                                                                                                     tAAGGCCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTc  >  2:436460/1‑140 (MQ=255)
                                                                                                                                     tAAGGCCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTc  >  1:1118913/1‑140 (MQ=255)
                                                                                                                                         |                                                                                                                                       
AGAATGGGACATTCAGTGGGAAATATTCCGACTTTTAGCTGAGTGCGAAGAACGCGATATCGAGCTGATAAAAGGCCTTAGGGCAGACCTGCGTGAGGCGGGTGAGAGCAATATTGGTATAATTTTTCAGCAATAAGACCAGAAAACGTGATTTAACGCCTGATTTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTC  >  NC_000913/4199959‑4200231

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A