Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F28 I1 R1 224 87.5 2960670 99.3% 2939945 138.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,773,113 C→T pseudogene (70/1016 nt) yfjV ← CP4‑57 prophage; putative arsenite transporter, N‑terminal fragment

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,773,1130CT100.0% 375.7 / NA 105pseudogene (70/1016 nt)yfjVCP4‑57 prophage; putative arsenite transporter, N‑terminal fragment
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (53/52);  total (53/52)

Only 100 of 108 total aligned reads displayed.

ACCAGGTTAGAAACAATGAGCGGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTCTTCAGCCATCAACACTGTATCGAGTAATGAAATTGGT  >  NC_000913/2772978‑2773247
                                                                                                                                       |                                                                                                                                      
aCCAGGTTAGAAACAATGAGCGGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCgtggcg                                                                                                                                    >  1:895570/1‑140 (MQ=255)
aCCAGGTTAGAAACAATGAGCGGCAGGCTGGCCGTATCTGCAATAAAACCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCgtggcg                                                                                                                                    <  1:64089/140‑1 (MQ=255)
     gTTAGAAACAATGAGCGGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCgtgg                                                                                                                                      >  2:1227187/1‑133 (MQ=255)
     gTTAGAAACAATGAGCGGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTc                                                                                                                               >  1:354555/1‑140 (MQ=255)
     gTTAGAAACAATGAGCGGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTc                                                                                                                               >  2:188424/1‑140 (MQ=255)
     gTTAGAAACAATGAGCGGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTc                                                                                                                               >  2:980277/1‑140 (MQ=255)
      ttAGAAACAATGAGCGGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCa                                                                                                                              <  2:1270571/140‑1 (MQ=255)
       tAGAAACAATGAGCGGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCAt                                                                                                                             <  2:895570/140‑1 (MQ=255)
            aCAATGAGCGGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCa                                                                                                                        <  1:499929/140‑1 (MQ=255)
            aCAATGAGCGGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTCGCGCCGTCATTGGCa                                                                                                                        <  2:1262890/140‑1 (MQ=255)
               aTGAGCGGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAaac                                                                                                                     >  1:1263451/1‑140 (MQ=255)
               aTGAGCGGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAaac                                                                                                                     >  2:272382/1‑140 (MQ=255)
               aTGAGCGGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAaac                                                                                                                     <  1:188424/140‑1 (MQ=255)
               aTGAGCGGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCATGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAaac                                                                                                                     >  2:1232380/1‑140 (MQ=255)
                tGAGCGGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAaaca                                                                                                                    >  2:558119/1‑140 (MQ=255)
                    cGGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGc                                                                                                                >  1:225850/1‑140 (MQ=255)
                       cAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATc                                                                                                             >  2:902103/1‑140 (MQ=255)
                       cAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCATGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATc                                                                                                             <  1:1232380/140‑1 (MQ=255)
                                 gTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCa                                                                                                   <  2:1343823/140‑1 (MQ=255)
                                 gTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCa                                                                                                   <  2:972805/140‑1 (MQ=255)
                                    tCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCg                                                                                                >  2:789520/1‑140 (MQ=255)
                                        cAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCa                                                                                            >  1:1327316/1‑140 (MQ=255)
                                        cAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCa                                                                                            >  1:1336940/1‑140 (MQ=255)
                                        cAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCa                                                                                            >  1:213956/1‑140 (MQ=255)
                                             aaTCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACt                                                                                       >  2:423708/1‑140 (MQ=255)
                                              aTCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACtt                                                                                      <  2:182814/140‑1 (MQ=255)
                                              aTCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACtt                                                                                      <  1:789520/140‑1 (MQ=255)
                                               tCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACttt                                                                                     >  2:362201/1‑140 (MQ=255)
                                                ccTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGa                                                                                         <  2:341729/135‑1 (MQ=255)
                                                ccTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGa                                                                                         >  1:341729/1‑135 (MQ=255)
                                                  tGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAg                                                                                              <  2:949061/128‑1 (MQ=255)
                                                  tGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAg                                                                                              >  1:949061/1‑128 (MQ=255)
                                                  tGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCa                                                                                  >  1:75654/1‑140 (MQ=255)
                                                   gCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAg                                                                                 >  1:181009/1‑140 (MQ=255)
                                                   gCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAg                                                                                 >  2:862987/1‑140 (MQ=255)
                                                     aGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGTAAGa                                                                                         >  2:907112/1‑130 (MQ=255)
                                                     aGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGa                                                                                         <  1:907112/130‑1 (MQ=255)
                                                       ccATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGa                                                                             >  1:625879/1‑140 (MQ=255)
                                                          tGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACa                                                                          <  1:362201/140‑1 (MQ=255)
                                                          tGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACa                                                                          <  1:811011/140‑1 (MQ=255)
                                                          tGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACa                                                                          <  2:354555/140‑1 (MQ=255)
                                                            aCAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAgc                                                                        <  1:474356/140‑1 (MQ=255)
                                                                aGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGctc                                                                    <  2:225850/140‑1 (MQ=255)
                                                                aGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGctc                                                                    <  1:902103/140‑1 (MQ=255)
                                                                aGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGctc                                                                    <  1:578642/140‑1 (MQ=255)
                                                                aGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGctc                                                                    <  1:687852/140‑1 (MQ=255)
                                                                 ggCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCGTCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGctct                                                                   >  2:12076/1‑140 (MQ=255)
                                                                 ggCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGctct                                                                   >  2:1073332/1‑140 (MQ=255)
                                                                 ggCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGctct                                                                   >  2:434597/1‑140 (MQ=255)
                                                                  gCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAgcg                                                                       <  1:887834/135‑1 (MQ=255)
                                                                  gCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAgcg                                                                       >  2:887834/1‑135 (MQ=255)
                                                                     aGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGctc                                                                    >  1:988469/1‑135 (MQ=255)
                                                                     aGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGctc                                                                    <  2:988469/135‑1 (MQ=255)
                                                                      gtgtCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGctc                                                                    >  1:1084423/1‑134 (MQ=255)
                                                                       tgtCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCtaggtag                                                             >  2:491694/1‑140 (MQ=255)
                                                                            tGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCtaggtag                                                             >  1:309991/1‑135 (MQ=255)
                                                                            tGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACt                                                        >  1:934749/1‑140 (MQ=255)
                                                                            tGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACt                                                        >  1:207896/1‑140 (MQ=255)
                                                                            tGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACt                                                        >  1:579577/1‑140 (MQ=255)
                                                                            tGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACt                                                        >  1:981821/1‑140 (MQ=255)
                                                                            tGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACt                                                        >  2:1333178/1‑140 (MQ=255)
                                                                            tGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACt                                                        <  2:1327316/140‑1 (MQ=255)
                                                                              cccTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACttt                                                      >  2:801986/1‑140 (MQ=255)
                                                                                cTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGt                                                    <  2:579577/140‑1 (MQ=255)
                                                                                cTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGt                                                    <  1:980277/140‑1 (MQ=255)
                                                                                 tGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTc                                                   >  2:1037082/1‑140 (MQ=255)
                                                                                 tGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTc                                                   >  1:746841/1‑140 (MQ=255)
                                                                                   gCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGt                                                 >  2:1219484/1‑140 (MQ=255)
                                                                                   gCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGt                                                 >  2:1137815/1‑140 (MQ=255)
                                                                                        aCCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATa                                            <  1:1219484/140‑1 (MQ=255)
                                                                                             gTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTc                                       >  2:501534/1‑140 (MQ=255)
                                                                                             gTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTc                                       >  2:1445663/1‑140 (MQ=255)
                                                                                             gTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTc                                       >  2:1161349/1‑140 (MQ=255)
                                                                                             gTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTc                                       >  2:426599/1‑140 (MQ=255)
                                                                                              tGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTCt                                      >  2:292171/1‑140 (MQ=255)
                                                                                                 gATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTCTTCa                                   <  1:1161349/140‑1 (MQ=255)
                                                                                                   tCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTCTTCAGc                                 >  1:1294090/1‑140 (MQ=255)
                                                                                                      gCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTCTTCAGCCAt                              <  1:1335813/140‑1 (MQ=255)
                                                                                                      gCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTCTTCAGCCAt                              <  1:801986/140‑1 (MQ=255)
                                                                                                      gCATCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTCTTCAGCCAt                              <  1:491694/140‑1 (MQ=255)
                                                                                                        aTCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTCtt                                     <  2:1192950/131‑1 (MQ=255)
                                                                                                        aTCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTCtt                                     >  1:1192950/1‑131 (MQ=255)
                                                                                                        aTCGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTCTTCAGCCATCa                            <  2:181009/140‑1 (MQ=255)
                                                                                                          cGCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTCTTCAGCCATCAac                          <  2:625879/140‑1 (MQ=255)
                                                                                                           gCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCGTCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTCTTCAGCCATCAaca                         <  1:12076/140‑1 (MQ=255)
                                                                                                           gCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTATGTAGGAACTTTGTCGTTGATAGAGTCTTCAGCCATCAaca                         <  2:1263451/140‑1 (MQ=255)
                                                                                                           gCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTCTTCAGCCATCAaca                         <  2:281406/140‑1 (MQ=255)
                                                                                                           gCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTCTTCAGCCATCAaca                         <  1:1073332/140‑1 (MQ=255)
                                                                                                           gCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTCTTCAGCCATCAaca                         <  1:1136035/140‑1 (MQ=255)
                                                                                                           gCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTCTTCAGCCATCAaca                         <  1:1137815/140‑1 (MQ=255)
                                                                                                           gCAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTCTTCAGCCATCAaca                         <  2:1294090/140‑1 (MQ=255)
                                                                                                            cAATCACAATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTCTTCAGCCATCAacac                        >  1:1169344/1‑140 (MQ=255)
                                                                                                                cacaATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTCTTCAGCCATCAACACTGTa                    <  2:207896/140‑1 (MQ=255)
                                                                                                                cacaATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTCTTCAGCCATCAACACTGTa                    <  2:934749/140‑1 (MQ=255)
                                                                                                                 acaATCGGCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTCTTCAGCCAt                              <  2:379837/129‑1 (MQ=255)
                                                                                                                       ggCGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTCTTCAGCCATCAACACTGTATCGAGTa             >  1:867467/1‑140 (MQ=255)
                                                                                                                         cGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTCTTCAGCCATCAac                          >  2:205687/1‑125 (MQ=255)
                                                                                                                         cGTCAGGATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTCTTCAGCCATCAac                          <  1:205687/125‑1 (MQ=255)
                                                                                                                              ggATCAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTCTTCAGCCATCAACACTGTATCGAGTAATGAAAt      <  2:746841/140‑1 (MQ=255)
                                                                                                                                  cAGCGTGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTCTTCAGCCATCAACACTGTATCGAGTAATGAAATTGGt  <  2:167652/140‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                      
ACCAGGTTAGAAACAATGAGCGGCAGGCTGGCCGTATCTGCAATAAATCCTGCAGCCATGACAAAGGCCAGTGTCGTGCCCTGGCTGAACCCAGTGCGATCAGCATCGCAATCACAATCGGCGTCAGGATCAGCGCGGCGCCGTCATTGGCAAACAACGCATCAACAGCGGCACCGAGCAAGACTTTCCAGGTGAACAGCGCTCTAGGTAGGAACTTTGTCGTTGATAGAGTCTTCAGCCATCAACACTGTATCGAGTAATGAAATTGGT  >  NC_000913/2772978‑2773247

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A