Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F28 I1 R1	224	87.5	2960670	99.3%	2939945	138.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,433,448	A→G	V38A (GTA→GCA)	smf ←	protein Smf

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,433,448	0	A	G	100.0%	293.7 / NA	84	V38A (GTA→GCA)	smf	protein Smf
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (41/43); total (41/43)

AGGATAAAATTCGCTGTCCGCAGGAATTAAATGATGGTTGGGTTGCTCCAACCAACAAAGTGAGCTTTCGATACTCTTTCGTGGAAATGAAAGAAAGCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATACAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGACCATATCATCGCCGTACAAGCTGCTGATACTCATTAAACGCAGCCAAATTTCTGTATCGACCATCCTTATCTCCCTGCCATAAGCAG  >  NC_000913/3433312‑3433583

aggaTAAAATTCGCTGTCCGCAGGAATTAAATGATGGTTGGGTTGCTCCAACCAACAAAGTGAGCTTTCGATTCTCTTTCGTGGAAATGAAAGAAAGCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCtgcaatgcaa                                                                                                                                      <  1:864079/140‑1 (MQ=255)

    tAAAATTCGCCGTCCGCAGGAATTAAATGATGGTTGGGTTGCTCCAACCAACAAAGTGAGCTTTCGATACTCTTTCGTGGAAATGAAAGAAAGCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGc                                                                                                                                  >  1:1373929/1‑140 (MQ=255)

      aaaTTCGCTGTCCGCAGGAATTAAATGATGGTTGGGTTGCTCCAACCAACAAAGTGAGCTTTCGATACTCTTTCGTGGAAATGAAAGAAAGCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCAt                                                                                                                                <  1:1003141/140‑1 (MQ=255)

      aaaTTCGCTGTCCGCAGGAATTAAATGATGGTTGGGTTGCTCCAACCAACAAAGTGAGCTTTCGATACTCTTTCGTGGAAATGAAAGAAAGCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCAt                                                                                                                                <  1:684529/140‑1 (MQ=255)

         ttCGCTGTCCGCAGGAATTAAATGATGGTTGGGTTGCTCCAACCAACAAAGTGAGCTTTCGATACTCTTTCGTGGAAATGAAAGAAAGCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATGCAACCg                                                                                                                                   >  2:232174/1‑134 (MQ=255)

         ttCGCTGTCCGCAGGAATTAAATGATGGTTGGGTTGCTCCAACCAACAAAGTGAGCTTTCGATACTCTTTCGTGGAAATGAAAGAAAGCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATGCAACCg                                                                                                                                   <  1:232174/134‑1 (MQ=255)

            gCTGTCCGCAGGAATTAAATGATGGTTGGGTTGCTCCAACCAACAAAGTGAGCTTTCGATACTCTTTCGTGGAAATGAAAGAAAGCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCAatat                                                                                                                          >  1:238962/1‑140 (MQ=255)

                         aTTAAATGATGGTTGGGTTGCTCCAACCAACAAAGTGAGCTTTCGATACTCTTTCGTGGAAATGAAAGAAAGCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGc                                                                                                             <  1:923635/140‑1 (MQ=255)

                          ttAAATGATGGTTGGGTTGCTCCAACCAACAAAGTGAGCTTTCGATACTCTTTCGTGGAAATGAAAGAAAGCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCa                                                                                                                              <  2:9207/122‑1 (MQ=255)

                          ttAAATGATGGTTGGGTTGCTCCAACCAACAAAGTGAGCTTTCGATACTCTTTCGTGGAAATGAAAGAAAGCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCa                                                                                                                              >  1:9207/1‑122 (MQ=255)

                          ttAAATGATGGTTGGGTTGCTCCAACCAACAAAGTGAGCTTTCGATACTCTTTCGTGGAAATGAAAGAAAGCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGcc                                                                                                            >  1:610735/1‑140 (MQ=255)

                                 atgGTTGGGTTGCTCCAACCAACAAAGTGAGCTTTCGATACTCTTTCGTGGAAATGAAAGAAAGCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGt                                                                                                     >  1:1307651/1‑140 (MQ=255)

                                 atgGTTGGGTTGCTCCAACCAACAAAGTGAGCTTTCGATACTCTTTCGTGGAAATGAAAGAAAGCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGt                                                                                                     >  2:577638/1‑140 (MQ=255)

                                 atgGTTGGGTTGCTCCAACCAACAAAGTGAGCTTTCGATACTCTTTCGTGGAAATGAAAGAAAGCGTTGTGCCTGCAGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGt                                                                                                     >  1:558115/1‑140 (MQ=255)

                                  tgGTTGGGTTGCTCCAACCAACAAAGTGAGCTTTCGATACTCTTTCGTGGAAATGAAAGAAAGCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTg                                                                                                    >  2:1135747/1‑140 (MQ=255)

                                    gttgggttgCTCCAACCAACAAAGTGAGCTTTCGATACTCTTTCGTGGAAATGAAAGAAAGCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAg                                                                                                  <  2:792659/140‑1 (MQ=255)

                                    gttgggttgCTCCAACCAACAAAGTGAGCTTTCGATACTCTTTCGTGGAAATGAAAGAAAGCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAg                                                                                                  <  1:1135747/140‑1 (MQ=255)

                                    gttgggttgCTCCAACCAACAAAGTGAGCTTTCGATACTCTTTCGTGGAAATGAAAGAAAGCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAg                                                                                                  <  1:299668/140‑1 (MQ=255)

                                    gttgggttgCTCCAACCAACAAAGTGAGCTTTCGATACTCTTTCGTGGAAATGAAAGAAAGCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAg                                                                                                  <  1:347343/140‑1 (MQ=255)

                                    gttgggttgCTCCAACCAACAAAGTGAGCTTTCGATACTCTTTCGTGGAAATGAAAGAAAGCGTTGTGCCTGCAGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAg                                                                                                  <  2:558115/140‑1 (MQ=255)

                                        ggttgCTCCAACCAACAAAGTGAGCTTTCGATACTCTTTCGTGGAAATGAAAGAAAGCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGAt                                                                                              >  1:887184/1‑140 (MQ=255)

                                        ggttgCTCCAACCAACAAAGTGAGCTTTCGATACTCTTTCGTGGAAATGAAAGAAAGCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGAt                                                                                              <  2:144237/140‑1 (MQ=255)

                                         gttgCTCCAACCAACAAAGTGAGCTTTCTATACTCTTTCGTGGAAATGAAAGAAAGCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATa                                                                                             <  1:1421152/140‑1 (MQ=255)

                                         gttgCTCCAACCAACAAAGTGAGCTTTCGATACTCTTTCGTGGAAATGAAAGAAAGCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATa                                                                                             <  2:170323/140‑1 (MQ=255)

                                         gttgCTCCAACCAACAAAGTGAGCTTTCGATACTCTTTCGTGGAAATGAAAGAAAGCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATa                                                                                             <  1:110691/140‑1 (MQ=255)

                                         gttgCTCCAACCAACAAAGTGAGCTTTCGATACTCTTTCGTGGAAATGAAAGAAAGCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATa                                                                                             <  2:1416627/140‑1 (MQ=255)

                                         gttgCTCCAACCAACAAAGTGAGCTTTCGATACTCTTTCGTGGAAATGAAAGAAAGCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATa                                                                                             <  2:1373929/140‑1 (MQ=255)

                                            gCTCCAACCAACAAAGTGAGCTTTCGATACTCTTTCGTGGAAATGAAAGAAAGCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACgg                                                                                          >  1:1101344/1‑140 (MQ=255)

                                            gCTCCAACCAACAAAGTGAGCTTTCGATACTCTTTCGTGGAAATGAAAGAAAGCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCA‑CCAGTGAGCGATACGGa                                                                                         >  2:1253346/1‑140 (MQ=255)

                                             cTCCAACCAACAAAGTGAGCTTTCGATACTCTTTCGTGGAAATGAAAGAAAGCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGa                                                                                         >  2:1151272/1‑140 (MQ=255)

                                             cTCCAACCAACAAAGTGAGCTTTCGATACTCTTTCGTGGAAATGAAAGAAAGCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGa                                                                                         >  2:677207/1‑140 (MQ=255)

                                              tCCAACCAACAAAGTGAGCTTTCGATACTCTTTCGTGGAAATGAAAGAAAGCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGAc                                                                                        >  2:1308438/1‑140 (MQ=255)

                                              tCCAACCAACAAAGTGAGCTTTCGATACTCTTTCGTGGAAATGAAAGAAAGCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGAc                                                                                        >  2:670590/1‑140 (MQ=255)

                                               ccaaccaaCAAAGTGAGCTTTCGATACTCTTTCGTGGAAATGAAAGAAAGCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGAcc                                                                                       >  2:244996/1‑140 (MQ=255)

                                               ccaaccaaCAAAGTGAGCTTTCGATACTCTTTCGTGGAAATGAAAGAAAGCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGAcc                                                                                       >  1:513140/1‑140 (MQ=255)

                                                  accaacAAAGTGAGCTTTCGATACTCTTTCGTGGAAATGAAAGAAAGCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGACCata                                                                                    >  2:564842/1‑140 (MQ=255)

                                                  acaaacaaAGTGAGCTTTCGATACTCTTTCGTGGAAATGAAAGAAAGCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGACCata                                                                                    >  1:418758/4‑140 (MQ=255)

                                                      acaaAGTGAGCTTTCGATACTCTTTCGTGGAAATGAAAGAAAGCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGACCATatcat                                                                                <  2:513140/140‑1 (MQ=255)

                                                      acaaAGTGAGCTTTCGATACTCTTTCGTGGAAATGAAAGAAAGCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGACCATatcat                                                                                <  2:238962/140‑1 (MQ=255)

                                                       caaAGTGAGCTTTCGATACTCTTTCGTGGAAATGAAAGAAAGCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGACCATatcatc                                                                               <  2:610735/140‑1 (MQ=255)

                                                       caaAGTGAGCTTTCGATACTCTTTCGTGGAAATGAAAGAAAGCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGACCATatcatc                                                                               <  2:1307651/140‑1 (MQ=255)

                                                              aGCTTTCGATACTCTTTCGTGGAAATGAAAGAAAGCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGACCATATCATCGCCGTAc                                                                        >  1:1423670/1‑140 (MQ=255)

                                                               gCTTTCGATACTCTTTCGTGGAAATGAAAGAAAGCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCA‑CCAGTGAGCGATACGGACCATATCATCGCCGTACaa                                                                      <  1:1253346/140‑1 (MQ=255)

                                                                cTTTCGATCCTCTTTCGTGGCAATAAAAAAAACCGTTAAACCTGCCGCAATGTAATCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGACCATATCATCGCCGTACaa                                                                      <  2:1197942/140‑1 (MQ=255)

                                                                cTTTCGATACTCTTTCGTGGAAATGAAAGAAAGCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGACCATATCATCGCCGTACaa                                                                      <  1:1274907/140‑1 (MQ=255)

                                                                  ttCGATACTCTTTCGTGGAAATGAAAGAAAGCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGACCATATCATCGCCGTACAAgc                                                                    <  2:1101344/140‑1 (MQ=255)

                                                                  ttCGATACTCTTTCGTGGAAATGAAAGAAAGCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGACCATATCATCGCCGTACAAgc                                                                    >  1:458660/1‑140 (MQ=255)

                                                                  ttCGATACTCTTTCGTGGAAATGAAAGAAAGCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGACCATATCATCGCCGTACAAgc                                                                    <  2:418758/140‑1 (MQ=255)

                                                                  ttCGATACTCTTTCGTGGAAATGAAAGAAAGCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGACCATATCATCGCCGTACAAgc                                                                    >  1:951415/1‑140 (MQ=255)

                                                                      aTACTCTTTCGTGGAAATGAAAGAAAGCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGACCATATCATCGCCGTACAAgctgct                                                                <  1:577638/140‑1 (MQ=255)

                                                                        aCTCTTTCGTGGAAATGAAAGAAAGCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCTAGTGAGCGATACGGACCATATCATCGCCGTACAAGCTGCTGa                                                              <  1:512200/140‑1 (MQ=255)

                                                                          tctTTCGTGGAAATGAAAGAAAGCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGAGTGTTTTGCCACCCAGTGAGCGATACGGACCATATCATCGCCGTACAAGCTGCTGATa                                                            >  2:442804/1‑140 (MQ=255)

                                                                           ctTTCGTGGAAATGAAAGAAAGCGTTGTCGCTGCCGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGACCATATCATCGCCGTACAAGCTGCTGATAc                                                           <  2:803929/140‑1 (MQ=255)

                                                                               cGTGGAAATGAAAGAAAGCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGACCATATCATCGCCGTACAAGCTGCTGa                                                              <  2:528346/133‑1 (MQ=255)

                                                                               cGTGGAAATGAAAGAAAGCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGACCATATCATCGCCGTACAAGCTGCTGa                                                              >  1:528346/1‑133 (MQ=255)

                                                                                   gAAATGAAAGAAAGCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGACCATATCATCGCCGTACAAGCTGCTGATACTCATTaaa                                                   <  2:678789/140‑1 (MQ=255)

                                                                                    aaaTGAAAGAAAGCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGACCATATCATCGCCGTACAAGCTGCTGATACTCATTAAAc                                                  >  2:1142647/1‑140 (MQ=255)

                                                                                    aaaTGAAAGAAAGCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGACCATATCATCGCCGTACAAGCTGCTGATACTCATTAAAc                                                  >  2:294567/1‑140 (MQ=255)

                                                                                         aaagaaagCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGACCATATCATCGCCGTACAAGCTGCTGATACTCATTAAACGCAGc                                             <  2:887184/140‑1 (MQ=255)

                                                                                         aaagaaagCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGACCATATCATCGCCGTACAAGCTGCTGATACTCATTAAACGCAGc                                             <  2:279916/140‑1 (MQ=255)

                                                                                               agCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGACCATATCATCGCCGTACAAGCTGCTGATACTCATTAAACGCAGCCAAAtt                                       >  2:1430174/1‑140 (MQ=255)

                                                                                                gCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGACCATATCATCGCCGTACAAGCTGCTGATACTCATTAAACGCAGCCAAAttt                                      >  2:131633/1‑140 (MQ=255)

                                                                                                   ttGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGACCATATCATCGCCGTACAAGCTGCTGATACTCATTAAACGCAGCCAAATTTCTg                                   >  1:305385/1‑140 (MQ=255)

                                                                                                    tgtgCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGACCATATCATCGCCGTACAAGCTGCTGATACTCATTAAACGCAGCCAAATTTCTGt                                  <  2:458660/140‑1 (MQ=255)

                                                                                                    tgtgCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGACCATATCATCGCCGTACAAGCTGCTGATACTCATTAAACGCAGCCAAATTTCTGt                                  >  1:879425/1‑140 (MQ=255)

                                                                                                      tgcctgccGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGACCATATCATCGCCGTACAAGCTGCTGATACTCATTAAACGCAGCCAAATTTCTGTAt                                >  2:1138100/1‑140 (MQ=255)

                                                                                                         ctgccGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGACCATATCATCGCCGTACAAGCTGCTGATACTCATTAAACGCAGCCAAATTTCTGTATCGa                             <  2:305385/140‑1 (MQ=255)

                                                                                                         ctgccGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGACCATATCATCGCCGTACAAGCTGCTGATACTCATTAAACGCAGCCAAATTTCTGTATCGa                             <  1:1430174/140‑1 (MQ=255)

                                                                                                         ctgccGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGACCATATCATCGCCGTACAAGCTGCTGATACTCATTAAACGCAGCCAAATTTCTGTATCGa                             <  2:1028809/140‑1 (MQ=255)

                                                                                                          tgccGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGACCATATCATCGCCGTACAAGCTGCTGATACTCATTAAACGCAGCCAAATTTCTGTATCGAc                            <  2:1423670/140‑1 (MQ=255)

                                                                                                           gccGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGACCATATCATCGCCGTACAAGCTGCTGATACTCATTAAACGCAGCCAAATTTCTGTATCGAcc                           >  2:246745/1‑140 (MQ=255)

                                                                                                           gccGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGACCATATCATCGCCGTACAAGCTGCTGATACTCATTAAACGCAGCCAAATTTCTGTATCGAcc                           <  2:153528/140‑1 (MQ=255)

                                                                                                           gccGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGACCATATCATCGCCGTACAAGCTGCTGATACTCATTAAACGCAGCCAAATTTCTGTATCGAcc                           <  1:677207/140‑1 (MQ=255)

                                                                                                           gccGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGACCATATCATCGCCGTACAAGCTGCTGATACTCATTAAACGCAGCCAAATTTCTGTATCGAcc                           >  2:1357687/1‑140 (MQ=255)

                                                                                                             cGCAATGTAAGCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGACCATATCATCGCCGTACAAGCTGCTGATACTCATTAAACGCAGCCAAATTTCTGTATCGACCAt                         >  2:517352/1‑140 (MQ=255)

                                                                                                                      aGCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGACCATATCATCGCCGTACAAGCTGCTGATACTCATTAAACGCAGCCAAATTTCTGTATCGACCATCCTTAtctc                >  1:279613/1‑140 (MQ=255)

                                                                                                                       gCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGACCATATCATCGCCGTACAAGCTGCTGATACTCATTAAACGCAGCCAAATTTCTGTATCGACCATCCTTATCTcc               <  2:820991/140‑1 (MQ=255)

                                                                                                                       gCCCTGTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGACCATATCATCGCCGTACAAGCTGCTGATACTCATTAAACGCAGCCAAATTTCTGTATCGACCATCCTTATCTcc               <  1:774427/140‑1 (MQ=255)

                                                                                                                            gTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGACCATATCATCGCCGTACAAGCTGCTGATACTCATTAAACGCAGCCAAATTTCTGTATCGACCATCCTTATCTcc               <  1:1055144/135‑1 (MQ=255)

                                                                                                                            gTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGACCATATCATCGCCGTACAAGCTGCTGATACTCATTAAACGCAGCCAAATTTCTGTATCGACCATCCTTATCTcc               >  2:1055144/1‑135 (MQ=255)

                                                                                                                            gTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGACCATATCATCGCCGTACAAGCTGCTGATACTCATTAAACGCAGCCAAATTTCTGTATCGACCATCCTTATCTCCCTGcc          >  1:755509/1‑140 (MQ=255)

                                                                                                                            gTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGACCATATCATCGCCGTACAAGCTGCTGATACTCATTAAACGCAGCCAAATTTCTGTATCGACCATCCTTATCTCCCTGcc          >  2:540490/1‑140 (MQ=255)

                                                                                                                            gTTTGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGACCATATCATCGCCGTACAAGCTGCTGATACTCATTAAACGCAGCCAAATTTCTGTATCGACCATCCTTATCTCCCTGcc          >  2:344803/1‑140 (MQ=255)

                                                                                                                             tttGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGACCATATCATCGCCGTACAAGCTGCTGATACTCATTAAACGCAGCCAAATTTCTGTATCGACCATCCTTAtctc                >  1:1000732/1‑133 (MQ=255)

                                                                                                                             tttGCTGCAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGACCATATCATCGCCGTACAAGCTGCTGATACTCATTAAACGCAGCCAAATTTCTGTATCGACCATCCTTAtctc                <  2:1000732/133‑1 (MQ=255)

                                                                                                                                 ctgcAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGACCATATCATCGCCGTACAAGCTGCTGATACTCATTAAACGCAGCCAAATTTCTGTATCGACCATCCTTATCTCCCTGCCATAag     <  1:517352/140‑1 (MQ=255)

                                                                                                                                    cAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGACCATATCATCGCCGTACAAGCTGCTGATACTCATTAAACGCAGCCAAATTTCTGTATCGACCATCCTTATCTCCCTGCCATAagcag  <  1:1142647/140‑1 (MQ=255)

                                                                                                                                    cAATGCAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGACCATATCATCGCCGTACAAGCTGCTGATACTCATTAAACGCAGCCAAATTTCTGTACCGACCATCCTTATCTCCCTGCCATAagcag  <  2:279613/140‑1 (MQ=255)

AGGATAAAATTCGCTGTCCGCAGGAATTAAATGATGGTTGGGTTGCTCCAACCAACAAAGTGAGCTTTCGATACTCTTTCGTGGAAATGAAAGAAAGCGTTGTGCCTGCCGCAATGTAAGCCCTGTTTGCTGCAATACAACCGCATCAATATGCGACTGTTTTGCCACCCAGTGAGCGATACGGACCATATCATCGCCGTACAAGCTGCTGATACTCATTAAACGCAGCCAAATTTCTGTATCGACCATCCTTATCTCCCTGCCATAAGCAG  >  NC_000913/3433312‑3433583

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A