Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F28 I1 R1	224	87.5	2960670	99.3%	2939945	138.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,838,343	C→T	S32S (AGC→AGT)	yicL →	putative inner membrane protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,838,343	0	C	T	100.0%	307.8 / NA	89	S32S (AGC→AGT)	yicL	putative inner membrane protein
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (42/47); total (42/47)

ATACATAAACGACAAAACAGTATGCAGAGGGAAAAATGGGTTCCACCAGAAAGGGGATGCTGAACGTTCTGATTGCCGCCGTGTTGTGGGGAAGTTCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGCCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGATATTCGCCGGTTTGATTCTACTGACGCTGTCATTTGTTCATGGCGATAAAATCTTTTCTATTATTAACAATCATAAAGATGCCATTAGCCTGCTGAT  >  NC_000913/3838213‑3838477

atacataAACGACAAAACAGTATGCAGAGGGAAAAATGGGTTCCACCAGAAAGGGGATGCTGAACGTTCTGATTGCCGCCGTGTTGTGGGGAAGTTCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATgtcg                                                                                                                               >  1:168243/1‑140 (MQ=255)

atacataAACGACAAAACAGTATGCAGAGGGAAAAATGGGTTCCACCAGAAAGGGGATGCTGAACGTTCTGATTGCCGCCGTGTTGTGGGGAAGTTCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATgtcg                                                                                                                               >  2:398850/1‑140 (MQ=255)

atacataAACGACAAAACAGTATGCAGAGGGAAAAATGGGTTCCACCAGAAAGGGGATGCTGAACGTTCTGATTGCCGCCGTGTTGTGGGGAAGTTCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATgtcg                                                                                                                               >  1:1073590/1‑140 (MQ=255)

atacataAACGACAAAACAGTATGCAGAGGGAAAAATGGGTTCCACCAGAAAGGGGATGCTGAACGTTCTGATTGCCGCCGTGTTGTGGGGAAGTTCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATgtcg                                                                                                                               >  2:783079/1‑140 (MQ=255)

   cataAACGACAAAACAGTATGCAGAGGGAAAAATGGGTTCCACCAGAAAGGGGATGCTGAACGTTCTGATTGCCGCCGTGTTGTGGGGAAGTTCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATGtcgtcg                                                                                                                            <  2:24360/140‑1 (MQ=255)

   cataAACGACAAAACAGTATGCAGAGGGAAAAATGGGTTCCACCAGAAAGGGGATGCTGAACGTTCTGATTGCCGCCGTGTTGTGGGGAAGTTCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATGtcgtcg                                                                                                                            <  2:1038179/140‑1 (MQ=255)

    ataAACGACAAAACAGTATGCAGAGGGAAAAATGGGTTCCACCAGAAAGGGGATGCTGAACGTTCTGATTGCCGCCGTGTTGTGGGGAAGTTCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATGTCGTCGc                                                                                                                           >  1:807466/1‑140 (MQ=255)

    ataAACGACAAAACAGTATGCAGAGGGAAAAATGGGTTCCACCAGAAAGGGGATGCTGAACGTTCTGATTGCCGCCGTGTTGTGGGGAAGTTCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATGTCGTCGc                                                                                                                           >  2:526959/1‑140 (MQ=255)

      aaaCGACAAAACAGTATGCAGAGGGAAAAATGGGTTCCACCAGAAAGGGGATGCTGAACGTTCTGATTGCCGCCGTGTTGTGGGGAAGTTCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATGTCGTCGCAg                                                                                                                         >  1:1298082/1‑140 (MQ=255)

       aaCGACAAAACAGTATGCAGAGGGAAAAATGGGTTCCACCAGAAAGGGGATGCTGAACGTTCTGATTGCCGCCGTGTTGTGGGGAAGTTCAGGGGTCTGTGCGCAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGt                                                                                                                        >  1:188589/1‑140 (MQ=255)

        aCGACAAAACAGTATGCAGAGGGAAAAATGGGTTCCACCAGAAAGGGGATGCTGAACGTTCTGATTGCCGCCGTGTTGTGGGGAAGTTCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGtt                                                                                                                       >  2:74118/1‑140 (MQ=255)

         cGACAAAACAGTATGCAGAGGGAAAAATGGGTTCCACCAGAAAGGGGATGCTGAACGTTCTGATTGCCGCCGTGTTGTGGGGAAGTTCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGttt                                                                                                                      >  2:1011420/1‑140 (MQ=255)

             aaaaCAGTATGCAGAGGGAAAAATGGGTTCCACCAGAAAGGGGATGCTGAACGTTCTGATTGCCGCCGTGTTGTGGGGAAGTTCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGa                                                                                                                  >  1:697730/1‑140 (MQ=255)

                   gTATGCAGAGGGAAAAATGGGTTCCACCAGAAAGGGGATGCTGAACGTTCTGATTGCTGCCGTGTTGTGGGGAAGTTCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGa                                                                                                            <  1:1316316/140‑1 (MQ=255)

                   gTATGCAGAGGGAAAAATGGGTTCCACCAGAAAGGGGATGCTGAACGTTCTGATTGCCGCCGTGTTGTGGGGAAGTTCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGa                                                                                                            <  1:796890/140‑1 (MQ=255)

                    tATGCAGAGGGAAAAATGGGTTCCACCAGAAAGGGGATGCTGAACGTTCTGATTGCCGCCGTGTTGTGGGGAAGTTCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGAc                                                                                                           >  1:859899/1‑140 (MQ=255)

                    tATGCAGAGGGAAAAATGGGTTCCACCAGAAAGGGGATGCTGAACGTTCTGATTGCCGCCGTGTTGTGGGGAAGTTCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGAc                                                                                                           <  1:1418187/140‑1 (MQ=255)

                     aTGCAGAGGGAAAAATGGGTTCCACCAGAAAGGGGATGCTGAACGTTCTGATTGCCGCCGTGTTGTGGGGAAGTTCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGAcg                                                                                                          <  2:697730/140‑1 (MQ=255)

                     aTGCAGAGGGAAAAATGGGTTCCACCAGAAAGGGGATGCTGAACGTTCTGATTGCCGCCGTGTTGTGGGGAAGTTCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGAcg                                                                                                          <  2:1298082/140‑1 (MQ=255)

                      tGCAGAGGGAAAAATGGGTTCCACCAGAAAGGGGATGCTGAACGTTCTGATTGCCGCCGTGTTGTGGGGAAGTTCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGAcgc                                                                                                         <  2:982669/140‑1 (MQ=255)

                         agagGGAAAAATGGGTTCCACCAGAAAGGGGATGCTGAACGTTCTGATTGCCGCCGTGTTGTGGGGAAGTTCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGtt                                                                                                      >  2:322899/1‑140 (MQ=255)

                         agagGGAAAAATGGGTTCCACCAGAAAGGGGATGCTGAACGTTCTGATTGCCGCCGTGTTGTGGGGAAGTTCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGtt                                                                                                      >  1:278033/1‑140 (MQ=255)

                           agGGAAAAATGGGTTCCACCAGAAAGGGGATGCTGAACGTTCTGATTGCCGCCGTGTTGTGGGGAAGTTCAGGGGTCTGCGCGCAATTCATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTg                                                                                                    >  1:588202/1‑140 (MQ=255)

                            gggAAAAATGGGTTCCACCAGAAAGGGGATGCTGAACGTTCTGATTGCCGCCGTGTTGTGGGGAAGTTCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGa                                                                                                   >  1:1072644/1‑140 (MQ=255)

                             ggAAAAATGGGTTCCACCAGAAAGGGGATGCTGAACGTTCTGATTGCCGCCGTGTTGTGGGGAAGTTCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGat                                                                                                  >  1:1131816/1‑140 (MQ=255)

                              gAAAAATGGGTTCCACCAGAAAGGGGATGCTGAACGTTCTGATTGCCGCCGTGTTGTGGGGAAGTTCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGata                                                                                                 >  2:277149/1‑140 (MQ=255)

                                aaaaTGGGTTCCACCAGAAAGGGGATGCTGAACGTTCTGATTGCCGCCGTGTTGTGGGGAAGTTCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGATAtt                                                                                               >  2:935544/1‑140 (MQ=255)

                                   aTGGGTTCCACCAGAAAGGGGATGCTGAACGTTCTGATTGCCGCCGTGTTGTGGGGAAGTTCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGATATTCGc                                                                                            <  2:1338012/140‑1 (MQ=255)

                                   aTGGGTTCCACCAGAAAGGGGATGCTGAACGTTCTGATTGCCGCCGTGTTGTGGGGAAGTTCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGATATTCGc                                                                                            <  2:1131816/140‑1 (MQ=255)

                                   aTGGGTTCCACCAGAAAGGGGATGCTGAACGTTCTGATTGCCGCCGTGTTGTGGGGAAGTTCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGATATTCGc                                                                                            <  1:322899/140‑1 (MQ=255)

                                      ggTTCCACCAGAAAGGGGATGCTGAACGTTCTGATTGCCGCCGTGTTGTGGGGAAGTTCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGATATTCGCCgg                                                                                         <  1:398850/140‑1 (MQ=255)

                                      ggTTCCACCAGAAAGGGGATGCTGAACGTTCTGATTGCCGCCGTGTTGTGGGGAAGTTCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGATATTCGCCgg                                                                                         <  1:277149/140‑1 (MQ=255)

                                       gTTCCACCAGAAAGGGGATGCTGAACGTTCTGATTGCCGCCGTGTTGTGGGGAAGTTCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGATATTCGCCGGt                                                                                        >  1:1347928/1‑140 (MQ=255)

                                       gTTCCACCAGAAAGGGGATGCTGAACGTTCTGATTGCCGCCGTGTTGAGGGGAAGTTCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGATATTCGCCGGt                                                                                        <  1:1232067/140‑1 (MQ=255)

                                           caccaGAAAGGGGATGCTGAACGTTCTGATTGCCGCCGTGTTGTGGGGAAGTTCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGATATTCGCCGGTTTGa                                                                                    <  2:807466/140‑1 (MQ=255)

                                           caccaGAAAGGGGATGCTGAACGTTCTGATTGCCGCCGTGTTGTGGGGAAGTTCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGATATTCGCCGGTTTGa                                                                                    <  1:1236088/140‑1 (MQ=255)

                                            accaGAAAGGGGATGCTGAACGTTCTGATTGCCGCCGTGTTGTGGGGAAGTTCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGATATTCGCCGGTTTGAt                                                                                   <  1:1011420/140‑1 (MQ=255)

                                                gAAAGGGGATGCTGAACGTTCTGATTGCCGCCGTGTTGTGGGGAAGTTCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGATATTCGCCGGTTTGATTCTa                                                                               >  1:1268383/1‑140 (MQ=255)

                                                 aaaGGGGATGCTGAACGTTCTGATTGCCGCCGTGTTGTGGGGAAGTTCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGATATTCGCCGGTTTGATTCTAc                                                                              >  2:520767/1‑140 (MQ=255)

                                                 aaaGGGGATGCTGAACGTTCTGATTGCCGCCGTGTTGTGGGGAAGTTCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGATATTCGCCGGTTTGATTCTAc                                                                              <  1:935544/140‑1 (MQ=255)

                                                    ggggATGCTGAACGTTCTGATTGCCGCCGTGTTGTGGGGAAGTTCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGATATTCGCCGGTTTGATTCTACTGa                                                                           <  1:526959/140‑1 (MQ=255)

                                                     gggATGCTGAACGTTCTGATTGCCGCCGTGTTGTGGGGAAGTTCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGATATTCGCCGGTTTGATTCTACTGAc                                                                          >  1:27523/1‑140 (MQ=255)

                                                      ggATGCTGAACGTTCTGATTGCCGCCGTGTTGTGGGGAAGTTCAGGGGTCTGCGCGCAATTCATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGATATTCGCCGGTTTGATTCTACTGACg                                                                         <  2:588202/140‑1 (MQ=255)

                                                      ggATGCTGAACGTTCTGATTGCCGCCGTGTTGTGGGGAAGTTCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGATATTCGCCGGTTTGATTCTACTGACg                                                                         <  1:1244666/140‑1 (MQ=255)

                                                      ggATGCTGAACGTTCTGATTGCCGCCGTGTTGTGGGGAAGTTCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGATATTCGCCGGTTTGATTCTACTGACg                                                                         <  2:278033/140‑1 (MQ=255)

                                                        aTGCTGAACGTTCTGATTGCCGCCGTGTTGTGGGGAAGTTCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGATATTCGCCGGTTTGATTCTACTGACGCt                                                                       >  1:1315777/1‑140 (MQ=255)

                                                        aTGCTGAACGTTCTGATTGCCGCCGTGTTGTGGGGAAGTTCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGATATTCGCCGGTTTGATTCTACTGACGCt                                                                       >  2:170412/1‑140 (MQ=255)

                                                           cTGAACGTTCTGATTGCCGCCGTGTTGTGGGGAAGTTCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGATATTCGCCGGTTTGATTCTACTGACg                                                                         >  1:1267328/1‑135 (MQ=255)

                                                           cTGAACGTTCTGATTGCCGCCGTGTTGTGGGGAAGTTCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGATATTCGCCGGTTTGATTCTACTGACg                                                                         <  2:1267328/135‑1 (MQ=255)

                                                           cTGAACGTTCTGATTGCCGCCGTGTTGTGGGGAAGTTCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGATATTCGCCGGTTTGATTCTACTGACGCTGTc                                                                    >  1:1053642/1‑140 (MQ=255)

                                                           cTGAACGTTCTGATTGCCGCCGTGTTGTGGGGAAGTTCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGATATTCGCCGGTTCGATTCTACTGACGCTGTc                                                                    >  2:924226/1‑140 (MQ=255)

                                                             gAACGTTCTGATTGCCGCCGTGTTGTGGGGAAGTTCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATTACGCGTTTGATATTCGCCGGTTTGATTCTACTGACGCTGTCAt                                                                  <  2:1315777/140‑1 (MQ=255)

                                                             gAACGTTCTGATTGCCGCCGTGTTGTGGGGAAGTTCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGATATTCGCCGGTTTGATTCTACTGACGCTGTCAt                                                                  <  2:325466/140‑1 (MQ=255)

                                                             gAACGTTCTGATTGCCGCCGTGTTGTGGGGAAGTTCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGATATTCGCCGGTTTGATTCTACTGACGCTGTCAt                                                                  <  2:1145283/140‑1 (MQ=255)

                                                             gAACGTTCTGATTGCCGCCGTGTTGCGGGGAAGTTCAGGGGTCTGCGCGCAATACACCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGATATTCGCCGGTTTGATTCTACTGACGCTGTCAt                                                                  <  2:988526/140‑1 (MQ=255)

                                                               aCGTTCTGATTGCCGCCGTGTTGTGGGGAAGTTCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGATATTCGCCGGTTTGATTCTACTGACGCTGTCAttt                                                                >  1:870014/1‑140 (MQ=255)

                                                                   tCTGATTGCCGCCGTGTTGTGGGGAAGTTCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGATATTCGCCGGTTTGATTCTACTGACGCTGTCATTTGTTc                                                            <  2:859899/140‑1 (MQ=255)

                                                                      gATTGCCGCCGTGTTGTGGGGAAGTTCAGGGGTCTGTGCGCAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGATATTCGCCGGTTTGATTCTACTGACGCTGTCATTTGTTCATg                                                         <  2:188589/140‑1 (MQ=255)

                                                                        ttGCCGCCGTGTTGTGGGGAAGTTCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGATATTCGCCGGTTTGATTCTACTGACGCTGTCATTTGTTCATGGc                                                       >  1:1342446/1‑140 (MQ=255)

                                                                            cgccgTGTTGTGGGGAAGTTCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGATATTCGCCGGTTTGATTCTACTGACGCTGTCATTTGTTCATGGCGATa                                                   >  1:296154/1‑140 (MQ=255)

                                                                                gtgtTGTGGGGAAGTTCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGATATTCGCCGGTTTGATTCTACTGACGCTGTCATTTGTTCATGGCGATAAAAt                                               <  2:1072644/140‑1 (MQ=255)

                                                                                 tgttgtGGGGAAGTTCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGATATTCGCCGGTTTGATTCTACTGACGCTGTCATTTGTTCATGGCGATAAAATc                                              >  2:391408/1‑140 (MQ=255)

                                                                                     gtgGGGAAGTTCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGATATTCGCCGGTTTGATTCTACTGACGCTGTCATTTGTTCATGGCGATAAAATCtttt                                          <  2:1073590/140‑1 (MQ=255)

                                                                                      tgGGGAAGTTCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGATATTCGCCGGTTTGATTCTACTGACGCTGTCATTTGTTCATGGCGATAAAATCTTTTc                                         >  1:1002241/1‑140 (MQ=255)

                                                                                        gggAAGTTCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGATATTCGCCGGTTCGATTCTACTGACGCTGTCATTTGTTCATGGCGATAAAATCTTTTCta                                       <  1:924226/140‑1 (MQ=255)

                                                                                           aaGTTCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGATATTCGCCGGTTTGATTCTACTGACGCTGTCATTTGTTCATGGCGATAAAATCTTTTCtatta                                    >  2:687675/1‑140 (MQ=255)

                                                                                              ttCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGATATTCGCCGGTTTGATTCTACTGACGCTGTCATTTGTTCATGGCGATAAAATCTTTTCTAttatta                                 >  1:370826/1‑140 (MQ=255)

                                                                                               tCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGATATTCGCCGGTTTGATTCTACTGACGCTGTCATTTGTTCATGGCGATAAAATCTTTTCTATTATTaa                                <  1:170412/140‑1 (MQ=255)

                                                                                               tCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGATATTCGCCGGTTTGATTCTACTGACGCTGTCATTTGTTCATGGCGATAAAATCTTTTCTATTATTaa                                <  2:870014/140‑1 (MQ=255)

                                                                                               tCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGATATTCGCCGGTTTGATTCTACTGACGCTGTCATTTGTTCATGGCGATAAAATCTTTTCTATTATTaa                                <  1:74118/140‑1 (MQ=255)

                                                                                               tCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGATATTCGCCGGTTTGATTCTACTGACGCTGTCATTTGTTCATGGCGAGAAGATCTTTTCTATTATTaa                                <  1:782144/140‑1 (MQ=255)

                                                                                                cAGGGGTCTGCGCGCAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGATATTCGCCGGTTTGATTCTACTGACGCTGTCATTTGTTCATGGCGATAAAATCTTTTCTATTATTAAc                               <  2:318735/140‑1 (MQ=255)

                                                                                                   gggTCTGCGCGCAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGATATTCGCCGGTTTGATTCTACTGACGCTGTCATTTGTTCATGGCGATAAAATCTTTTCTATTATTAACAAt                            >  1:452910/1‑140 (MQ=255)

                                                                                                       cTGCGCGCAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGATATTCGCCGGTTTGATTCTACTGACGCTGTCATTTGTTCATGGCGATAAAATCTTTTCTATTATTAACAATCATa                        <  2:27523/140‑1 (MQ=255)

                                                                                                        tGCGCGCAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGATATTCGCCGGTTTGATTCTACTGACGCTGTCATTTGTTCATGGCGATAAAATCTTTTCTATTATTAACAATCATaa                       >  1:1311684/1‑140 (MQ=255)

                                                                                                          cgcgcAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGATATTCGCCGGTTTGATTCTACTGACGCTGTCATTTGTTCATGGCGATAAAATCTTTTCTATTATTAACAATCATAAAg                     >  2:753814/1‑140 (MQ=255)

                                                                                                           gcgcAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGATATTCGCCGGTTTGATTCTACTGACGCTGTCATTTGTTCATGGCGATAAAATCTTTTCTATTATTAACAATCATAAAGa                    <  1:336752/140‑1 (MQ=255)

                                                                                                           gcgcAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGATATTCGCCGGTTTGATTCTACTGACGCTGTCATTTGTTCATGGCGATAAAATCTTTTCTATTATTAACAATCATAAAGa                    <  2:1268383/140‑1 (MQ=255)

                                                                                                           gcgcAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGATATTCGCCGGTATGATTCTACTGACGCTGTCATTTGTTCATGGCGATAAAATCTTTTCTATTATTAACAATCATAAAGa                    <  2:1342446/140‑1 (MQ=255)

                                                                                                             gcAATACATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGATATTCGCCGG‑TTGATTCTACTGACGCTGTCATTTGTTCATGGCGATAAAATCTTTTCTATTATTAACAATCATAAAGATGc                 >  1:232562/1‑140 (MQ=255)

                                                                                                                  aCATCATGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGATATTCGCCGGTTTGATTCTACTGACGCTGTCATTTGTTCATGGCGATAAAATCTTTTCTATTATTAACAATCATAAAGATGCCAtt             <  1:520767/140‑1 (MQ=255)

                                                                                                                   catcatGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGATATTCGCCGGTTTGATTCTACTGACGCTGTCATTTGTTCATGGCGATAAAATCTTTTCTATTATTAACAATCATAAAGATGCCATTa            <  2:370826/140‑1 (MQ=255)

                                                                                                                    atcatGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGATATTCGCCGGTTTGATTCTACTGACGCTGTCATTTGTTCATGGCGATAAAATCTTTTCTATTATTAACAATCATAAAGATGCCATTAg           >  1:300810/1‑140 (MQ=255)

                                                                                                                        tGGAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGATATTCGCCGGTTTGATTCTACTGACGCTGTCATTTGTTCATGGCGATAAAATCTTTTCTATTATTAACAATCATAAAGATGCCATTAGCctg       <  2:685031/140‑1 (MQ=255)

                                                                                                                         ggAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGATATTCGCCGGTTTGATTCTACTGACGCTGTCATTTGTTCATGGCGATAAAATCTTTTCTATTATTAACAATCATAAAGATGCCATTAGCctgc      >  1:780239/1‑140 (MQ=255)

                                                                                                                          gAGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGATATTCGCCGGTTTGATTCTACTGACGCTGTCATTTGTTCATGGCGATAAAATCTTTTCTATTATTAACAATCATAAAGATGCCATTAGCctgct     <  2:1347928/140‑1 (MQ=255)

                                                                                                                           aGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGATATTCGCCGGTTTGATTCTACTGACGCTGTCATTTGTTCATGGCGATAAAATCTTTTCTATTATTAACAATCATAAAGa                    >  2:558372/1‑124 (MQ=255)

                                                                                                                           aGCAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGATATTCGCCGGTTTGATTCTACTGACGCTGTCATTTGTTCATGGCGATAAAATCTTTTCTATTATTAACAATCATAAAGa                    <  1:558372/124‑1 (MQ=255)

                                                                                                                             cAAAGTCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGATATTCGCCGGTTTGATTCTACTGACGCTGTCATTTGTTCATGGCGATAAAATCTTTTCTATTATTAACAATCATAAAGATGCCATTAGCCTGCTGAt  <  1:753814/140‑1 (MQ=255)

ATACATAAACGACAAAACAGTATGCAGAGGGAAAAATGGGTTCCACCAGAAAGGGGATGCTGAACGTTCTGATTGCCGCCGTGTTGTGGGGAAGTTCAGGGGTCTGCGCGCAATACATCATGGAGCAAAGCCAGATGTCGTCGCAGTTTTTGACTATGACGCGTTTGATATTCGCCGGTTTGATTCTACTGACGCTGTCATTTGTTCATGGCGATAAAATCTTTTCTATTATTAACAATCATAAAGATGCCATTAGCCTGCTGAT  >  NC_000913/3838213‑3838477

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A