Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F28 I1 R1	224	87.5	2960670	99.3%	2939945	138.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,234,871	A→G	T372A (ACT→GCT)	pgi →	glucose‑6‑phosphate isomerase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,234,871	0	A	G	100.0%	470.6 / NA	135	T372A (ACT→GCT)	pgi	glucose‑6‑phosphate isomerase
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (65/70); total (65/70)

Only 100 of 136 total aligned reads displayed.

TTCTTTGGTGCGGAAACTGAAGCGATTCTGCCGTATGACCAGTATATGCACCGTTTCGCGGCGTACTTCCAGCAGGGCAATATGGAGTCCAACGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGACTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCACGCGTTCTACCAGCTGATCCACCAGGGAACCAAAATGGTACCGTGCGATTTCATCGCTCCGGCTATCACCCATAACCCGCTCTCTGATCATCA  >  NC_000913/4234736‑4235007

ttCTTTGGTGCGGAAACTGAAGCGATTCTGCCGTATGACCAGTATATGCACCGTTTCGCGGCGTACTTCCAGCAGGGCAATATGGAGTCCAACGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTgg                                                                                                                                      >  1:344240/1‑140 (MQ=255)

ttCTTTGGTGCGGAAACTGAAGCGATTCTGCCGTATGACCAGTATATGCACCGTTTCGCGGCGTACTTCCAGCAGGGCAATATGGAGTCCAACGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTgg                                                                                                                                      <  2:289604/140‑1 (MQ=255)

ttCTTTGGTGCGGAAACTGAAGCGATTCTGCCGTATGACCAGTATATGCACCGTTTCGCGGCGTACTTCCAGCAGGGCAATATGGAGTCCAACGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTgg                                                                                                                                      >  2:778605/1‑140 (MQ=255)

 tCTTTGGTGCGGAAACTGAAGCGATTCTGCCGTATGACCAGTATATGCACCGTTTCGCGGCGTACTTCCAGCAGGGCAATATGGAGTCCAACGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTGGc                                                                                                                                     >  2:928208/1‑140 (MQ=255)

 tCTTTGGTGCGGAAACTGAAGCGATTCTGCCGTATGACCAGTATATGCACCGTTTCGCGGCGTACTTCCAGCAGGGCAATATGGAGTCCAACGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTGGc                                                                                                                                     >  1:878904/1‑140 (MQ=255)

 tCTTTGGTGCGGAAACTGAAGCGATTCTGCCGTATGACCAGTATATGCACCGTTTCGCGGCGTACTTCCAGCAGGGCAATATGGAGTCCAACGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTGGc                                                                                                                                     >  2:1440467/1‑140 (MQ=255)

    ttGGTGCGGAAACTGAAGCGATTCTGCCGTATGACCAGTATATGCACCGTTTCGCGGCGTACTTCCAGCAGGGCAATATGGAGTCCAACGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTGGTCCg                                                                                                                                  <  1:193040/140‑1 (MQ=255)

          cGGAAACTGAAGCGATTCTGCCGTATGACCAGTATATGCACCGTTTCGCGGCGTACTTCCAGCAGGGCAATATGGAGTCCAACGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTGGCCCGATTATc                                                                                                                            >  1:1436645/1‑140 (MQ=255)

             aaaCTGAAGCGATTCTGCCGTATGACCAGTATATGCACCGTTTCGCGGCGTACTTCCAGCAGGGCAATATGGAGTCCAACGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTGGCCCGATTATCTgg                                                                                                                         >  2:1187103/1‑140 (MQ=255)

              aaCTGAAGCGATTCTGCCGTATGACCAGTATATGCACCGTTTCGCGGCGTACTTCCAGCAGGGCAATATGGAGTCCAACGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTGGCCCGATTATCTggg                                                                                                                        <  1:778605/140‑1 (MQ=255)

                cTGAAGCGATTCTGCCGTATGACCAGTATATGCACCGTTTCGCGGCGTACTTCCAGCAGGGCAATATGGAGTCCAACGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGt                                                                                                                      <  1:802411/140‑1 (MQ=255)

                cTGAAGCGATTCTGCCGTATGACCAGTATATGCACCGTTTCGCGGCGTACTTCCAGCAGGGCAATATGGAGTCCAACGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGt                                                                                                                      <  1:1440467/140‑1 (MQ=255)

                  gAAGCGATTCTGCCGTATGACCAGTATATGCACCGTTTCGCGGCGTACTTCCAGCAGGGCAATATGGAGTCCAACGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGa                                                                                                                    >  2:1066348/1‑140 (MQ=255)

                    aGCGATTCTGCCGTATGACCAGTATATGCACCGTTTCGCGGCGTACTTCCAGCAGGGCAATATGGAGTCCAACGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAAc                                                                                                                  >  1:101269/1‑140 (MQ=255)

                    aGCGATTCTGCCGTATGACCAGTATATGCACCGTTTCGCGGCGTACTTCCAGCAGGGCAATATGGAGTCCAACGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAAc                                                                                                                  <  2:1014193/140‑1 (MQ=255)

                    aGCGATTCTGCCGTATGACCAGTATATGCACCGTTTCGCGGCGTACTTCCAGCAGGGCAATATGGAGTCCAACGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAAc                                                                                                                  <  1:215885/140‑1 (MQ=255)

                     gCGATTCTGCCGTATGACCAGTATATGCACCGTTTCGCGGCGTACTTCCAGCAGGGCAATATGGAGTCCAACGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAAcc                                                                                                                 <  1:794931/140‑1 (MQ=255)

                       gATTCTGCCGTATGACCAGTATATGCACCGTTTCGCGGCGTACTTCCAGCAGGGCAATATGGAGTCCAACGGTAAGTATGTTGACCGTAACGGTAACGTTGT‑GATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAgg                                                                                                              >  1:1176698/1‑140 (MQ=255)

                         ttCTGCCGTATGACCAGTATATGCACCGTTTCGCGGCGTACTTCCAGCAGGGCAATATGGAGTCCAACGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGc                                                                                                             >  2:242941/1‑140 (MQ=255)

                              ccGTATGACCAGTATATGCACCGTTTCGCGGCGTACTTCCAGCAGGGCAATATGGAGTCCAACGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTaa                                                                                                        <  1:1187103/140‑1 (MQ=255)

                                  aTGACCAGTATATGCACCGTTTCGCGGCGTACTTCCAGCATGGCAATATGGAGTCCAACGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGt                                                                                                    <  2:1307115/140‑1 (MQ=255)

                                   tGACCAGTATATGCACCGTTTCGCGGCGTACTTCCAGCAGGGCAATATGGAGTCCAACGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTc                                                                                                   >  2:353724/1‑140 (MQ=255)

                                   tGACCAGTATATGCACCGTTTCGCGGCGTACTTCCAGCAGGGCAATATGGAGTCCAACGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTc                                                                                                   <  2:484524/140‑1 (MQ=255)

                                      ccAGTATATGCACCGTTTCGCGGCGTACTTCCAGCAGGGCAATATGGAGTCCAACGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGc                                                                                                <  1:1066348/140‑1 (MQ=255)

                                       cAGTATATGCACCGTTTCGCGGCGTACTTCCAGCAGGGCAATATGGAGTCCAACGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCa                                                                                               <  1:353724/140‑1 (MQ=255)

                                       cAGTATATGCACCGTTTCGCGGCGTACTTCCAGCAGGGCAATATGGAGTCCAACGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCa                                                                                               <  2:1031725/140‑1 (MQ=255)

                                       cAGTATATGCACCGTTTCGCGGCGTACTTCCAGCAGGGCAATATGGAGTCCAACGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCa                                                                                               <  2:101269/140‑1 (MQ=255)

                                         gTATATGCACCGTTTCGCGGCGTACTTCCAGCAGGGCAATATGGAGTCCAACGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCAcg                                                                                             <  1:5883/140‑1 (MQ=255)

                                          tataTGCACCGTTTCGCGGCGTACTTCCAGCAGGGCAATATGGAGTCCAACGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCa                                                                                               >  1:1171460/1‑137 (MQ=255)

                                          tataTGCACCGTTTCGCGGCGTACTTCCAGCAGGGCAATATGGAGTCCAACGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCa                                                                                               <  2:1171460/137‑1 (MQ=255)

                                          tataTGCACCGTTTCGCGGCGTACTTCCAGCAGGGCAATATGGAGTCCAACGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCAcgc                                                                                            <  2:1249532/140‑1 (MQ=255)

                                          tataTGCACCGTTTCGCGGCGTACTTCCAGCAGGGCAATATGGAGTCCAACGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCAcgc                                                                                            <  2:1032304/140‑1 (MQ=255)

                                           atatGCACCGTTTCGCGGCGTACTTCCAGCAGGGCAATATGGAGTCCAACGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCAcgcg                                                                                           >  1:295841/1‑140 (MQ=255)

                                           atatGCACCGTTTCGCGGCGTACTTCCAGCAGGGCAATATGGAGTCCAACGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCAcgcg                                                                                           >  1:395446/1‑140 (MQ=255)

                                                cACCGTTTCGCGGCGTGCTTCCAGCAGGGCAATATGGAGTCCAACGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCACGCGTTCTa                                                                                      <  2:848442/140‑1 (MQ=255)

                                                   cGTTTCGCGGCGTACTTCCAGCAGGGCAATATGGAGTCCAACGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCACGCGTTCTACCa                                                                                   <  2:878904/140‑1 (MQ=255)

                                                    gTTTCGCGGCGTACTTCCAGCAGGGCAATATGGAGTCCAACGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCAcgc                                                                                            <  2:922554/130‑1 (MQ=255)

                                                    gTTTCGCGGCGTACTTCCAGCAGGGCAATATGGAGTCCAACGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCAcgc                                                                                            >  1:922554/1‑130 (MQ=255)

                                                    gTTTCGCGGCGTACTTCCAGCAGGGCAATATGGAGTCCAACGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCACGCGTTCTACCAg                                                                                  >  2:168986/1‑140 (MQ=255)

                                                    gTTTCGCGGCGTACTTCCAGCAGGGCAATATGGAGTCCAACGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCACGCGTTCTACCAg                                                                                  >  2:423396/1‑140 (MQ=255)

                                                    gTTTCGCGGCGTACTTCCAGCAGGGCAATATGGAGTCCAACGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCACGCGTTCTACCAg                                                                                  >  2:973548/1‑140 (MQ=255)

                                                    gTTTCGCGGCGTACTTCCAGCAGGGCAATATGGAGTCCAACGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCACGCGTTCTACCAg                                                                                  >  1:128497/1‑140 (MQ=255)

                                                     tttCGCGGCGTACTTCCAGCAGGGCAATATGGAGTCCAACGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCACGCGTTCTAcc                                                                                    <  1:1004736/137‑1 (MQ=255)

                                                     tttCGCGGCGTACTTCCAGCAGGGCAATATGGAGTCCAACGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCACGCGTTCTACCAGc                                                                                 >  2:917508/1‑140 (MQ=255)

                                                     tttCGCGGCGTACTTCCAGCAGGGCAATATGGAGTCCAACGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCACGCGTTCTACCAGc                                                                                 <  2:1016957/140‑1 (MQ=255)

                                                       tCGCGGCGTACTTCCAGCAGGGCAATATGGAGTCCAACGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCACGCGTTCTACCAGCTg                                                                               >  1:1001608/1‑140 (MQ=255)

                                                        cgcgGCGTACTTCCAGCAGGGCAATATGGAGTCCAACGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCACGCGTTCTACCAGCTGa                                                                              <  2:168288/140‑1 (MQ=255)

                                                              gTACTTCCAGCAGGGCAATATGGAGTCCAACGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCACGCGTTCTACCAGCTGATccacc                                                                        <  1:1039971/140‑1 (MQ=255)

                                                               tACTTCCAGCAGGGCAATATGGAGTCCAACGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCACGCGTTCTACCAGCTGATccacca                                                                       >  2:705240/1‑140 (MQ=255)

                                                               tACTTCCAGCAGGGCAATATGGAGTCCAACGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCACGCGTTCTACCAGCTGATccacca                                                                       >  1:1335366/1‑140 (MQ=255)

                                                                  ttCCAGCAGGGCAATATGGAGTCCAACGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATCACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCACGCGTTCTACCAGCTGATCCACCAggg                                                                    <  2:936091/140‑1 (MQ=255)

                                                                     cagcagGGCAATATGGAGTCCAACGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCACGCGTTCTACCAGCTGATCCACCAGGGAAc                                                                 <  1:27708/140‑1 (MQ=255)

                                                                     cagcagGGCAATATGGAGTCCAACGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCACGCGTTCTACCAGCTGATCCACCAGGGAAc                                                                 <  2:395446/140‑1 (MQ=255)

                                                                     cagcagGGCAATATGGAGTCCAACGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCACGCGTTCTACCAGCTGATCCACCAGGGAAc                                                                 <  1:1019042/140‑1 (MQ=255)

                                                                       gcagGGCAATATGGAGTCCAACGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCACGCGTTCTACCAGCTGATCCACCAGGGAAc                                                                 >  1:78597/1‑138 (MQ=255)

                                                                       gcagGGCAATATGGAGTCCAACGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCACGCGTTCTACCAGCTGATCCACCAGGGAAc                                                                 <  2:78597/138‑1 (MQ=255)

                                                                           ggCAATATGGAGTCCAACGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCACGCGTTCTACCAGCTGATCCACCAGGGAAc                                                                 <  1:479979/134‑1 (MQ=255)

                                                                           ggCAATATGGAGTCCAACGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCACGCGTTCTACCAGCTGATCCACCAGGGAACCAAAAt                                                           >  2:1301963/1‑140 (MQ=255)

                                                                            gCAATATGGAGTCCAACGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCACGCGTTCTACCAGCTGATCCACCAGGGAACCAAAATg                                                          >  1:305279/1‑140 (MQ=255)

                                                                              aaTATGGAGTCCAACGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCACGCGTTCTACCAGCTGATCCACCAGGGAACCAAAATGGt                                                        >  2:694700/1‑140 (MQ=255)

                                                                               atatGGAGTCCAACGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCACGCGTTCTACCAGCTGATCCACCAGGGAACCAAAATGGTa                                                       <  1:917508/140‑1 (MQ=255)

                                                                                   ggAGTCCAACGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCACGCGTTCTACCAGCTGATCCACCAGGGAACCAAAATGGTACCGt                                                   >  1:1305194/1‑140 (MQ=255)

                                                                                     aGTCCAACGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCACGCGTTCTACCAGCTGATCCACCAGGGAACCAAAATGGTACCGTGc                                                 >  1:720382/1‑140 (MQ=255)

                                                                                     aGTCCAACGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTGGCCCGATTATCTGGAGTGAACCAGGCACTAACGGTCAGCACGCGTTCTACCAGCTGATCCACCAGGGAACCAAAATGGCACCGTGc                                                 >  1:86998/1‑140 (MQ=255)

                                                                                          aaCGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCACGCGTTCTACCAGCTGATCCACCAGGGAACCAAAATGGTACCGTGCGAttt                                            >  1:947895/1‑140 (MQ=255)

                                                                                          aaCGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCACGCGTTCTACCAGCTGATCCACCAGGGAACCAAAATGGTACCGTGCGAttt                                            >  2:1440111/1‑140 (MQ=255)

                                                                                          aaCGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCACGCGTTCTACCAGCTGATCCACCAGGGAACCAAAATGGTACCGTGCGAttt                                            >  2:284992/1‑140 (MQ=255)

                                                                                                 aGTATGTTGACCGTAACGGTAACGTTGTGGATTGCCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCACGCGTTCTACCAGCTGATCCACCAGGGAACCAAAATGGTACCGTGCGATTTCATCGCt                                     >  1:921090/1‑140 (MQ=255)

                                                                                                 aGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCACGCGTTCTACCAGCTGATCCACCAGGGAACCAAAATGGTACCGTGCGATTTCATCGCt                                     >  2:878344/1‑140 (MQ=255)

                                                                                                 aGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCACGCGTTCTACCAGCTGATCCACCAGGGAACCAAAATGGTACCGTGCGATTTCATCGCt                                     >  2:330459/1‑140 (MQ=255)

                                                                                                         gACCGTAGCGGTAACGTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCACGCGTTCTACCAGCTGATCCACCAGGGAACCAAAATGGTACCGTGCGATTTCATCGCTCCGGCTAt                             >  1:649911/1‑140 (MQ=255)

                                                                                                         gACCGTAACGGTAACGTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCACGCGTTCTACCAGCTGATCCACCAGGGAACCAAAATGGTACCGTGCGATTTCATCGCTCCGGCTAt                             <  1:284992/140‑1 (MQ=255)

                                                                                                         gACCGTAACGGTAACGTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCACGCGTTCTACCAGCTGATCCACCAGGGAACCAAAATGGTACCGTGCGATTTCATCGCTCCGGCTAt                             <  2:532379/140‑1 (MQ=255)

                                                                                                         gACCGTAACGGTAACGTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCACGCGTTCTACCAGCTGATCCACCAGGGAACCAAAATGGTACCGTGCGATTTCATCGCTCCGGCTAt                             <  2:305279/140‑1 (MQ=255)

                                                                                                         gACCGTAACGGTAACGTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCACGCGTTCTACCAGCTGATCCACCAGGGAACCAAAATGGTACCGTGCGATTTCATCGCTCCGGCTAt                             <  1:160719/140‑1 (MQ=255)

                                                                                                         gACCGTAACGGTAACGTTGTGGATTACCAGGCTGGCCCGACTATCTGGGGTGAACCAGGCACTAACGGTCAGCACGCGTTCTACCAGCTGATCCACCAGGGAACCAAAATGGTACCGTGCGATTTCATCGCTCCGGCTAt                             <  2:1305194/140‑1 (MQ=255)

                                                                                                            cGTAACGGTAACGTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCACGCGTTCTACCAGCTGATCCACCAGGGAACCAAAATGGTACCGTGCGATTTCATCGCTCCGGCTATCAc                          >  2:881668/1‑140 (MQ=255)

                                                                                                             gtaacggtaacgTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCACGCGTTCTACCAGCTGATCCACCAGGGAACCAAAATGGTACCGTGCGATTTCATCGCTCCGGCTAt                             <  1:508333/136‑1 (MQ=255)

                                                                                                             gtaacggtaacgTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCACGCGTTCTACCAGCTGATCCACCAGGGAACCAAAATGGTACCGTGCGATTTCATCGCTCCGGCTAt                             >  2:508333/1‑136 (MQ=255)

                                                                                                             gtaacggtaacgTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCACGCGTTCTACCAGCTGATCCACCAGGGAACCAAAATGGTACCGTGCGATTTCATCGCTCCGGCTAt                             >  2:72894/1‑136 (MQ=255)

                                                                                                             gtaacggtaacgTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCACGCGTTCTACCAGCTGATCCACCAGGGAACCAAAATGGTACCGTGCGATTTCATCGCTCCGGCTATCAcc                         >  2:268356/1‑140 (MQ=255)

                                                                                                             gtaacggtaacgTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCACGCGTTCTACCAGCTGATCCACCAGGGAACCAAAATGGTACCGTGCGATTTCATCGCTCCGGCTATCAcc                         >  2:941136/1‑140 (MQ=255)

                                                                                                             gtaacggtaacgTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCACGCGTTCTACCAGCTGATCCACCAGGGAACCAAAATGGTACCGTGCGATTTCATCGCTCCGGCTATCAcc                         >  1:974722/1‑140 (MQ=255)

                                                                                                              taacggtaacgTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCACGCGTTCTACCAGCTGATCCACCAGGGAACCAAAATGGTACCGTGCGATTTCATCGCTCCGGCTATCAccc                        <  1:941136/140‑1 (MQ=255)

                                                                                                              taacggtaacgTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCACGCGTTCTACCAGCTGATCCACCAGGGAACCAAAATGGTACCGTGCGATTTCATCGCTCCGGCTATCAccc                        <  2:1436645/140‑1 (MQ=255)

                                                                                                              taacggtaacgTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCACGCGTTCTACCAGCTGATCCACCAGGGAACCAAAATGGTACCGTGCGATTTCATCGCTCCGGCTATCAccc                        <  2:947895/140‑1 (MQ=255)

                                                                                                                gcggtaacgTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCACGCGTTCTACCAGCTGATCCACCAGGGAACCAAAATGGTACCGTGCGATTTCATCGCTCCGGCTATCACCCAt                      <  2:649911/139‑1 (MQ=255)

                                                                                                                acggtaacgTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCACGCGTTCTACCAGCTGATCCACCAGGGAACCAAAATGGTACCGTGCGATTTCATCGCTCCGGCTATCACCCAt                      <  1:878344/140‑1 (MQ=255)

                                                                                                                acggtaacgTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCACGCGTTCTACCAGCTGATCCACCAGGGAACCAAAATGGTACCGTGCGATTTCATCGCTCCGGCTATCACCCAt                      <  1:268356/140‑1 (MQ=255)

                                                                                                                   gcaacgTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCACGCGTTCTACCAGCTGATCCACCAGGGAACCAAAATGGTACCGTGCGATTTCATCGCTCCGGCTATCACCCATAAc                   <  2:1001608/138‑1 (MQ=255)

                                                                                                                    taacgTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCACGCGTTCTACCAGCTGATCCACCAGGGAACCAAAATGGTACCGTGCGATTTCATCGCTCCGGCTATCACCCATAAcc                  >  1:822017/1‑140 (MQ=255)

                                                                                                                     aacgTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCACGCGTTCTACCAGCTGATCCACCAGGGAACCAAAATGGTACCGTGCGATTTCATCGCTCCGGCTATCACCCATAAccc                 <  1:694700/140‑1 (MQ=255)

                                                                                                                     aacgTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCACGCGTTCTACCAGCTGATCCACCAGGGAACCAAAATGGTACCGTGCGATTTCATCGCTCCGGCTATCACCCATAAccc                 <  2:1335366/140‑1 (MQ=255)

                                                                                                                      acgTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCACGCGTTCTACCAGCTGATCCACCAGGGAACCAAAATGGTACCGTGCGATTTCATCGCTCCGGCTATCACCCATAACCCg                >  1:1424663/1‑140 (MQ=255)

                                                                                                                      acgTTGTGGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCACGCGTTCTACCAGCTGATCCACCAGGGAACCAAAATGGTACCGTGCGATTTCATCGCTCCGGCTATCACCCATAACCCg                >  1:227215/1‑140 (MQ=255)

                                                                                                                            tgGATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCACGCGTTCTACCAGCTGATCCACCAGGTAACCAAAATGGTACCGTGCGATTTCATCGCTCCGGCTATCACCCATAACCCGctctct          >  2:1362906/1‑140 (MQ=255)

                                                                                                                              gATTACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCACGCGTTCTACCAGCTGATCCACCAGGGAACCAAAATGGTACCGTGCGATTTCATCGCTCCGGCTATCACCCATAACCCg                >  1:946266/1‑132 (MQ=255)

                                                                                                                                ttACCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCACGCGTTCTACCAGCTGATCCACCAGGGAACCAAAATGGTACCGTGCGATTTCATCGCTCCGGCTATCACCCATAACCCGCTCTCTGatc      <  1:1301963/140‑1 (MQ=255)

                                                                                                                                  aCCAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCACGCGTTCTACCAGCTGATCCACCAGGGAACCAAAATGGTACCGTGCGATTTCATCGCTCCGGCTATCACCCATAACCCGCTCTCTGatcat    >  2:922484/1‑140 (MQ=255)

                                                                                                                                    cAGGCTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCACGCGTTCTACCAGCTGATCCACCAGGGAACCAAAATGGTACCGTGCGATTTCATCGCTCCGGCTATCACCCATAACCCGCTCTCTGAtcatca  <  2:822017/140‑1 (MQ=255)

TTCTTTGGTGCGGAAACTGAAGCGATTCTGCCGTATGACCAGTATATGCACCGTTTCGCGGCGTACTTCCAGCAGGGCAATATGGAGTCCAACGGTAAGTATGTTGACCGTAACGGTAACGTTGTGGATTACCAGACTGGCCCGATTATCTGGGGTGAACCAGGCACTAACGGTCAGCACGCGTTCTACCAGCTGATCCACCAGGGAACCAAAATGGTACCGTGCGATTTCATCGCTCCGGCTATCACCCATAACCCGCTCTCTGATCATCA  >  NC_000913/4234736‑4235007

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A