Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F28 I1 R1 224 87.5 2960670 99.3% 2939945 138.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,237,358 C→T S154S (AGC→AGT)  yjbG → capsule biosynthesis GfcC family protein YjbG

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,237,3580CT100.0% 205.8 / NA 58S154S (AGC→AGT) yjbGcapsule biosynthesis GfcC family protein YjbG
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (34/24);  total (34/24)

GGGCAGGCAAAAAATCAATCTTGATCCCGATATCGTCCGCGTTGCCGAACGCGGTAA‑CCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGCCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCGAGCTATCTCTCTGACCAGAGCCTGCTCAGCGGTGCGGATCGCAGCTACGCGTGGGTGGTTTACCCGGACGGACGCACGCAAAAAGCGC  >  NC_000913/4237226‑4237488
                                                                                                                                     |                                                                                                                                  
gggCAGGCAAAAAATCAATCTTGATCCCGATATCGTCCGCGTTGCCGAACGCGGTAA‑CCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGTCGTCCTg                                                                                                                             >  1:1168126/1‑140 (MQ=255)
     ggaaaacaaCCATTCTTGCACGCGATATCCCCCGCGTTGCCGAGGGCGGTAG‑CCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGTCGTCCTGGCAag                                                                                                                        <  2:325162/137‑1 (MQ=255)
       aaaaaaaTCAATCTTGACCCCGATACCGCCCGCGTTGCCGAACGCGGTAC‑CCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGTCGTCCTGGCAagca                                                                                                                      <  1:934080/139‑1 (MQ=255)
        aaaaaaTCAATCTTGACCCCGATATCGCCCGCGTTGCCGAACGCGGTAA‑CCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGTCGTCCTGGCAagcag                                                                                                                     <  2:761248/140‑1 (MQ=255)
           aaaaCAATCTTGCACCCGGTAACCCCCCGGTTCCCCAACGGGGTAACCCCGCCGTTGC‑GGGCAACTACACGCTGTGGGTCGGACCACCACCGTCCACGGTCACGTTGTTCGGGCTTATCAGTCGTCCTGGCAAGCAGCCa                                                                                                                  <  1:1317404/140‑1 (MQ=255)
            aatcaatcTTGATCCCGATATCGTCCGCGTTGCCGAACGCGGTAA‑CCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGTCGTCCTGGCAAGCAGCCAt                                                                                                                 <  1:876012/140‑1 (MQ=255)
                aatcTTGATCCCGATATCGTCCGCGTTGCCGAACGCGGTAA‑CCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGTCGTCCTGGCAagcag                                                                                                                     >  2:206693/1‑132 (MQ=255)
                aatcTTGATCCCGATATCGTCCGCGTTGCCGAACGCGGTAA‑CCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGTCGTCCTGGCAagcag                                                                                                                     <  1:206693/132‑1 (MQ=255)
                aatcTTGATCCCGATATCGTCCGCGTTGCCGAACGCGGTAA‑CCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGTCGTCCTGGCAAGCAGCCATTCAc                                                                                                             >  1:950752/1‑140 (MQ=255)
                 atcTTGATCCCGATATCGCCCGCGTTGCCGAGCGCGGTAC‑CCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGTCGTCCTGGCAAGCAGCCATTCACt                                                                                                            <  2:879485/140‑1 (MQ=255)
                            gATATCGTCCGCGTTGCCGAACGCGGTAA‑CCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGTCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGa                                                                                                 >  1:1447982/1‑140 (MQ=255)
                              tatCGTCCGCGTTGCCGAACGCGGTAA‑CCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGTCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACg                                                                                               >  2:1099011/1‑140 (MQ=255)
                              tatCGTCCGCGTTGCCGAACGCGGTAA‑CCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGTCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACg                                                                                               >  2:574809/1‑140 (MQ=255)
                                 cgcccGCTTTGCCAACCGCGGTAC‑CCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGTCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTgg                                                                                            <  1:897603/137‑1 (MQ=255)
                                   tCCGCGTTGCCGAACGCGGTAA‑CCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGTCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGa                                                                                                 <  1:540383/133‑1 (MQ=255)
                                   tCCGCGTTGCCGAACGCGGTAA‑CCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGTCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGa                                                                                                 >  2:540383/1‑133 (MQ=255)
                                   tCCGCGTTGCCGAACGCGGTAA‑CCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGTCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCg                                                                                          >  2:334363/1‑140 (MQ=255)
                                   tCCGCGTTGCCGAACGCGGTAA‑CCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGTCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCg                                                                                          <  1:1061204/140‑1 (MQ=255)
                                   tCCGCGTTGCCGAACGCGGTAA‑CCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGTCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCg                                                                                          >  2:63885/1‑140 (MQ=255)
                                   tCCGCGTTGCCGAACGCGGTAA‑CCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGTCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCg                                                                                          >  1:11048/1‑140 (MQ=255)
                                   tCCGCGTTGCCGAACGCGGTAA‑CCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGTCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCg                                                                                          >  2:1082998/1‑140 (MQ=255)
                                   tCCGCGTTGCCGAACGCGGTAA‑CCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGTCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCg                                                                                          >  2:1353694/1‑140 (MQ=255)
                                   tCCGCGTTGCCGAACGCGGTAA‑CCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGTCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCg                                                                                          >  2:1098370/1‑140 (MQ=255)
                                   tCCGCGTTGCCGAACGCGCTAA‑CCCGCCGTTGCAGGGCAACTACACGCTGTGGGCCGGACCACCGCCGTCCACGGGCACGTTGTTCGGGCTTATCAGTCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCg                                                                                          >  2:667557/1‑140 (MQ=255)
                                   cccGCGTTGCCGACCGCGGTAC‑CCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGTCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCg                                                                                          <  2:110366/139‑1 (MQ=255)
                                    ccGCGTTGCCGAACGCGGTAA‑CCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGTCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCGa                                                                                         >  1:450925/1‑140 (MQ=255)
                                        gTTGCTGAACGCGGTAA‑CCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGTCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCGAGCTa                                                                                     <  1:1034612/140‑1 (MQ=255)
                                        gTTGCCGAACGCGGTAA‑CCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCTCCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGTCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCGAGCTa                                                                                     <  2:950752/140‑1 (MQ=255)
                                                      tAA‑CCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGTCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCGAGCTATCTCTCTGACCaga                                                                       >  1:375311/1‑140 (MQ=255)
                                                              ccgTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGTCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCGAGCTATCTCTCTGACCAGAGCCTGCt                                                                <  2:1447982/140‑1 (MQ=255)
                                                                gTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGTCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCGAGCTATCTCTCTGACCAGAGCCTGCTCa                                                              >  1:195824/1‑140 (MQ=255)
                                                                gTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGTCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCGAGCTATCTCTCTGACCAGAGCCTGCTCa                                                              <  1:1098370/140‑1 (MQ=255)
                                                                 ttGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGTCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCGAGCTATCTCTCTGAcc                                                                          <  1:620307/127‑1 (MQ=255)
                                                                 ttGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGTCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCGAGCTATCTCTCTGAcc                                                                          >  2:620307/1‑127 (MQ=255)
                                                                        gCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGTCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCGAGCTATCTCTCTGACCAGAGCCTGCTCAGCGGTGCg                                                      <  1:63885/140‑1 (MQ=255)
                                                                            cTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGTCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCGAGCTATCTCTCTGACCAGAGCCTGCTCAGCGGTGCGGATc                                                  <  1:645308/140‑1 (MQ=255)
                                                                            cTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGTCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCGAGCTATCTCTCTGACCAGAGCCTGCTCAGCGGTGCGGATc                                                  >  1:451108/1‑140 (MQ=255)
                                                                            cTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGTCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCGAGCTATCTCTCTGACCAGAGCCTGCTCAGCGGTGCGGATc                                                  >  1:377881/1‑140 (MQ=255)
                                                                             tACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGTCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCGAGCTATCTCTCTGACCAGAGCCTGCTCAGCGGTGCGGATCg                                                 <  1:1082998/140‑1 (MQ=255)
                                                                             tACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGTCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCGAGCTATCTCTCTGACCAGAGCCTGCTCAGCGGTGCGGATCg                                                 <  2:195824/140‑1 (MQ=255)
                                                                                      tgGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGTCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCGAGCTATCTCTCTGACCAGAGCCTGCTCAGCGGTGCGGATCGCAGCTAcgc                                        >  1:312366/1‑140 (MQ=255)
                                                                                      tgGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGTCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCGAGCTATCTCTCTGACCAGAGCCTGCTCAGCGGTGCGGATCGCAGCTAcgc                                        >  2:944974/1‑140 (MQ=255)
                                                                                       gggTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGTCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCGAGCTATCTCTCTGACCAGAGCCTGCTCAGCGGTGCGGATCGCAGCTAcgcg                                       >  1:1046809/1‑140 (MQ=255)
                                                                                         gTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGTCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCGAGCTATCTCTCTGACCAGAGCCTGCTCAGCGGTGCGGATCGCAGCTACGCgtg                                     <  1:1099011/140‑1 (MQ=255)
                                                                                          tCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGTCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCGAGCTATCTCTCTGACCAGAGCCTGCTCAGCGGTGCGGATCGCAGCTACGCgtgg                                    <  2:1168126/140‑1 (MQ=255)
                                                                                          tCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGTCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCGAGCTATCTCTCTGACCAGAGCCTGCTCAGCGGTGCGGATCGCAGCTACGCgtgg                                    <  2:375311/140‑1 (MQ=255)
                                                                                                caccGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGTCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCGAGCTATCTCTCTGACCAGAGCCTGCTCAGCGGTGCGGATCGCAGCTACGCGTGGGTGGtt                              >  2:202318/1‑140 (MQ=255)
                                                                                                caccGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGTCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCGAGCTATCTCTCTGACCAGAGCCTGCTCAGCGGTGCGGATCGCAGCTACGCGTGGGAGGtt                              >  2:396710/1‑140 (MQ=255)
                                                                                                  ccgccgTCCACGGTCACGTTGTTCGGGCTTATCAGTCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCGAGCTATCTCTCTGACCAGAGCCTGCTCAGCGGTGCGGATCGCAGCTACGCGTGGGTGGTTTa                            >  1:1342180/1‑140 (MQ=255)
                                                                                                  ccgccgTCCACGGTCACGTTGTTCGGGCTTATCAGTCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCGAGCTATCTCTCTGACCAGAGCCTGCTCAGCGGTGCGGATCGCAGCTACGCGTGGGTGGTTTa                            >  2:956917/1‑140 (MQ=255)
                                                                                                        tCCACGGTCACGTTGTTCGGGCTTATCAGTCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCGAGCTATCTCTCTGACCAGAGCCTGCTCAGCGGTGCGGATCGCAGCTACGCGTGGGTGGTTTACCcgga                      >  2:1060007/1‑140 (MQ=255)
                                                                                                        tCCACGGTCACGTTGTTCGGGCTTATCAGTCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCGAGCTATCTCTCTGACCAGAGCCTGCTCAGCGGTGCGGATCGCAGCTACGCGTGGGTGGTTTACCcgga                      >  1:514303/1‑140 (MQ=255)
                                                                                                        tCCACGGTCACGTTGTTCGGGCTTATCAGTCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCGAGCTATCTCTCTGACCAGAGCCTGCTCAGCGGTGCGGATCGCAGCTACGCGTGGGTGGTTTACCcgga                      >  1:1092403/1‑140 (MQ=255)
                                                                                                                  cGTTGTTCGGGCTTATCAGTCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCGAGCTATCTCTCTGACCAGAGCCTGCTCAGCGGTGCGGATCGCAGCTACGCGTGGGTGGTTTACCCGGACGGacgcacg            >  1:988163/1‑140 (MQ=255)
                                                                                                                  cGTTGTTCGGGCTTATCAGTCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCGAGCTATCTCTCTGACCAGAGCCTGCTCAGCGGTGCGGATCGCAGCTACGCGTGGGTGGTTTACCCGGACGGacgcacg            >  1:411678/1‑140 (MQ=255)
                                                                                                                       ttCGGGCTTATCAGTCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCGAGCTATCTCTCTGACCAGAGCCTGCTCAGCGGTGCGGATCGCAGCTACGCGTGGGTGGTTTACCCGGACGGACGCACGCaaaa       >  1:1170733/1‑140 (MQ=255)
                                                                                                                           ggCTTATCAGTCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCGAGCTATCTCTCTGACCAGAGCCTGCTCAGCGGTGCGGATCGCAGCTACGCGTGGGTGGTTTACCCGGACGGACGCACGCAAAAAgcg   >  1:311671/1‑140 (MQ=255)
                                                                                                                            gCTTATCAGTCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCGAGCTATCTCTCTGACCAGAGCCTGCTCAGCGGTGCGGATCGCAGCTACGCGTGGGTGGTTTACCCGGACGGACGCACGCAAAAAgcgc  >  2:523673/1‑140 (MQ=255)
                                                                                                                            gCTTATCAGTCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCGAGCTATCTCTCTGACCAGAGCCTGCTCAGCGGTGCGGATCGCAGCTACGCGTGGGTGGTTTACCCGGACGGACGCACGCAAAAAgcgc  <  1:944974/140‑1 (MQ=255)
                                                                                                                                     |                                                                                                                                  
GGGCAGGCAAAAAATCAATCTTGATCCCGATATCGTCCGCGTTGCCGAACGCGGTAA‑CCCGCCGTTGCAGGGCAACTACACGCTGTGGGTCGGACCACCGCCGTCCACGGTCACGTTGTTCGGGCTTATCAGCCGTCCTGGCAAGCAGCCATTCACTCCAGGTCGCGACGTGGCGAGCTATCTCTCTGACCAGAGCCTGCTCAGCGGTGCGGATCGCAGCTACGCGTGGGTGGTTTACCCGGACGGACGCACGCAAAAAGCGC  >  NC_000913/4237226‑4237488

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A