Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F28 I1 R1	224	87.5	2960670	99.3%	2939945	138.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,518,648	T→C	L41P (CTA→CCA)	insA‑7 →	KpLE2 phage‑like element; IS1 repressor protein InsA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,518,648	0	T	C	100.0%	300.0 / NA	92	L41P (CTA→CCA)	insA‑7	KpLE2 phage‑like element; IS1 repressor protein InsA
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (45/47); total (45/47)

ATTTTAAGGTGCTTGCGTGGCTTCCATTTCCATCAGATGTCCTTCCTGCTCCGCTACTGAAGGCGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACTACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCATTGATATGGCCATGAATGGCGTCGGATGTCGCGCCAGTGCACGCATTATGGGCGTTGGCCTCAACACGGTTTTACGTCACTTAAAAA  >  NC_000913/4518511‑4518782

aTTTTAAGGTGCTTGCGTGGCTTCCATTTCCATCAGATGTCCTTCCTGCTCCGCTACTGAAGGCGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCAc                                                                                                                                      >  1:606224/1‑140 (MQ=255)

  tttAAGGTGCTTGCGTGGCTTCCATTTCCATCAGATGTCCTTCCTGCTCCGCTACTGAAGGCGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAg                                                                                                                                    <  1:571802/140‑1 (MQ=255)

  tttAAGGTGCTTGCGTGGCTTCCATTTCCATCAGATGTCCTTCCTGCTCCGCTACTGAAGGCGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAg                                                                                                                                    <  2:273907/140‑1 (MQ=255)

  tttAAGGTGCTTGCGTGGCTTCCATTTCCATCAGATGTCCTTCCTGCTCCGCTACTGAAGGCGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAg                                                                                                                                    <  2:231429/140‑1 (MQ=255)

  tttAAGGTGCTTGCGTGGCTTCCATTTCCATCAGATGTCCTTCCTGCTCCGCTACTGAAGGCGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAg                                                                                                                                    <  2:606224/140‑1 (MQ=255)

     aaGGTGCTTGCGTGGCTTCCATTTCCATCAGATGTCCTTCCTGCTCCGCTACTGAAGGCGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTc                                                                                                                                 >  1:1378517/1‑140 (MQ=255)

          gCTTGCGTGGCTTCCATTTCCATCAGATGTCCTTCCTGCTCCGCTACTGAAGGCGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTa                                                                                                                            >  1:134815/1‑140 (MQ=255)

             tGCGTGGCTTCCATTTCCATCAGATGTCCTTCCTGCTCCGCTACTGAAGGCGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTacac                                                                                                                         >  1:704366/1‑140 (MQ=255)

              gCGTGGCTTCCATTTCCATCAGATGTCCTTCCTGCTCCGCTACTGAAGGCGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACAcc                                                                                                                        >  1:1160768/1‑140 (MQ=255)

                 tGGCTTCCATTTCCATCAGATGTCCTTCCTGCTCCGCTACTGAAGGCGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGcc                                                                                                                     >  2:1153360/1‑140 (MQ=255)

                  ggCTTCCATTTCCATCAGATGTCCTTCCTGCTCCGCTACTGAAGGCGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCct                                                                                                                    >  1:1240730/1‑140 (MQ=255)

                    cTTACATTTCCATCAGATGTCCTTCCTGCTCCGCTACTGAAGGCGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCctct                                                                                                                  <  1:642911/140‑1 (MQ=255)

                              catCAGATGTCCTTCCTGCTCCGCTACTGAAGGCGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGc                                                                                                              >  1:1174517/1‑134 (MQ=255)

                              catCAGATGTCCTTCCTGCTCCGCTACTGAAGGCGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGc                                                                                                              <  2:1174517/134‑1 (MQ=255)

                              catCAGATGTCCTTCCTGCTCCGCTACTGAAGGCGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTa                                                                                                        >  1:1219534/1‑140 (MQ=255)

                                tCAGATGTCCTTCCTGCTCCGCTACTGAAGGCGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGc                                                                                                              >  2:467568/1‑132 (MQ=255)

                                tCAGATGTCCTTCCTGCTCCGCTACTGAAGGCGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGc                                                                                                              <  1:467568/132‑1 (MQ=255)

                                 cAGATGTCCTTCCTGCTCCGCTACTGAAGGCGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGc                                                                                                     <  1:1153360/140‑1 (MQ=255)

                                     tGTCCTTCCTGCTCCGCTACTGAAGGCGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCg                                                                                                           <  1:1002224/130‑1 (MQ=255)

                                     tGTCCTTCCTGCTCCGCTACTGAAGGCGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCg                                                                                                           >  2:1002224/1‑130 (MQ=255)

                                      gTCCTTCCTGCTCCGCTACTGAAGGCGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAg                                                                                                >  1:507429/1‑140 (MQ=255)

                                       tccttcctGCTCCGCTACTGAAGGCGTGGTGCGTAACGGCAAAAGCACTGCCGGCCATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGa                                                                                               <  1:1025268/140‑1 (MQ=255)

                                       tccttcctGCTCCGCTACTGAAGGCGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGa                                                                                               <  2:531342/140‑1 (MQ=255)

                                       tccttcctGCTCCGCTACTGAAGGCGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGa                                                                                               <  1:70966/140‑1 (MQ=255)

                                       tccttcctGCTCCGCTACTGAAGGCGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGa                                                                                               <  1:669689/140‑1 (MQ=255)

                                        ccttcctGCTCCGCTACTGAAGGCGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGaa                                                                                              <  2:704366/140‑1 (MQ=255)

                                            cctGCTCCGCTACTGAAGGCGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATc                                                                                          >  1:710110/1‑140 (MQ=255)

                                              tGCTCCGCTACTGAAGGCGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCAt                                                                                        >  1:1475253/1‑140 (MQ=255)

                                              tGCTCCGCTACTGAAGGCGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCAt                                                                                        <  2:710110/140‑1 (MQ=255)

                                              tGCTCCGCTACTGAAGGCGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCAt                                                                                        >  2:1232952/1‑140 (MQ=255)

                                                 tCCGCTACTGAAGGCGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCATTGa                                                                                     >  1:854333/1‑140 (MQ=255)

                                                  ccGCTACTGAAGGCGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCATTGat                                                                                    >  1:955862/1‑140 (MQ=255)

                                                  ccGCTACTGAAGGCGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCATTGat                                                                                    >  2:104866/1‑140 (MQ=255)

                                                  ccGCTACTGAAGGCGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCATTGat                                                                                    <  2:1219534/140‑1 (MQ=255)

                                                  ccGCTACTGAAGGCGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCATTGat                                                                                    <  2:1240730/140‑1 (MQ=255)

                                                   cGCTACTGAAGGCGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCATTGata                                                                                   <  2:1160768/140‑1 (MQ=255)

                                                   cGCTACTGAAGGCGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCATTGata                                                                                   >  1:1017186/1‑140 (MQ=255)

                                                   cGCTACTGAAGGCGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCATTGata                                                                                   <  1:1343132/140‑1 (MQ=255)

                                                   cGCTACTGAAGGCGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCATTGata                                                                                   >  2:265174/1‑140 (MQ=255)

                                                   cGCTACTGAAGGCGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCATTGata                                                                                   <  2:155366/140‑1 (MQ=255)

                                                   cGCTACTGAAGGCGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCATTGata                                                                                   <  1:205396/140‑1 (MQ=255)

                                                    gCTACTGAAGGCGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCATTGatat                                                                                  >  2:973490/1‑140 (MQ=255)

                                                     cTACTGAAGGCGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGa                                                                                               >  1:207886/1‑126 (MQ=255)

                                                     cTACTGAAGGCGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGa                                                                                               <  2:207886/126‑1 (MQ=255)

                                                     cTACTGAAGGCGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCATTGATATg                                                                                 <  1:973490/140‑1 (MQ=255)

                                                     cTACTGAAGGCGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCATTGATATg                                                                                 >  1:993839/1‑140 (MQ=255)

                                                       ccTGAAGGCGTGGTGCGTAACGGAAAAAGCACTGCCGGACACCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCATTGATATGGc                                                                               <  2:1475253/139‑1 (MQ=255)

                                                                gtggtgCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCATTGATATGGCCATGAATgg                                                                      >  1:336456/1‑140 (MQ=255)

                                                                  ggtgCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCATTGata                                                                                   >  1:1216803/1‑125 (MQ=255)

                                                                  ggtgCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCATTGata                                                                                   <  2:1216803/125‑1 (MQ=255)

                                                                        tAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCATTGATATGGCCATGAATGGCGTCGGAt                                                              >  1:49727/1‑140 (MQ=255)

                                                                              cAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCATTGATATGGCCATGaa                                                                         >  2:998247/1‑123 (MQ=255)

                                                                              cAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCATTGATATGGCCATGaa                                                                         <  1:998247/123‑1 (MQ=255)

                                                                              cAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCATTGATATGGCCATGAATGGCGTCGGATGTcgcg                                                        >  1:1008661/1‑140 (MQ=255)

                                                                              cAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCATTGATATGGCCATGAATGGCGTCGGATGTcgcg                                                        >  2:1379464/1‑140 (MQ=255)

                                                                               aaaaGCCCGGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCGAAAAAACATGGCAACCACATTTCACTTCCACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCATTGATATGGCCATGAATGGCGTCGGATGTCgcgc                                                       <  2:955862/140‑1 (MQ=17)

                                                                                  aGCACTGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCATTGATATGGCCATGAATGGCGTCGGATGTCGCGCCAg                                                    <  2:1301100/140‑1 (MQ=255)

                                                                                    cACTGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCATTGATATGGCCATGAATGGCGTCGGATGTCGCGCCAGTg                                                  <  1:1131232/140‑1 (MQ=255)

                                                                                     aCTGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCATTGATATGGCCATGAATGGCGTCGGATGTCGCGCCAGTGc                                                 <  2:1008661/140‑1 (MQ=255)

                                                                                     aCTGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCATTGATATGGCCATGAATGGCGTCGGATGTCGCGCCAGTGc                                                 <  1:104866/140‑1 (MQ=255)

                                                                                      cTGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCATTGATATGGCCATGAATGGCGTCGGATGTCGCGCCAGTGCa                                                <  2:43620/140‑1 (MQ=255)

                                                                                      cTGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCATTGATATGGCCATGAATGGCGTCGGATGTCGCGCCAGTGCa                                                <  1:1346323/140‑1 (MQ=255)

                                                                                      cTGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCATTGATATGGCCATGAATGGCGTCGGATGTCGCGCCAGTGCa                                                <  1:592316/140‑1 (MQ=255)

                                                                                      cTGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCATTGATATGGCCATGAATGGCGTCGGATGTCGCGCCAGTGCa                                                <  2:49727/140‑1 (MQ=255)

                                                                                      cTGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCATTGATATGGCCATGAATGGCGTCGGATGTCGCGCCAGTGCa                                                <  1:1232952/140‑1 (MQ=255)

                                                                                      cTGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCATTGATATGGCCATGAATGGCGTCGGATGTCGCGCCAGTGCa                                                <  2:573833/140‑1 (MQ=255)

                                                                                      cTGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAAAATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCATTGATATGGCCATGAATGGCGTCGGATGTCGCGCCAGTGCa                                                <  2:1378517/140‑1 (MQ=255)

                                                                                        gCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCATTGATATGGCCATGAATGGCGTCGGATGTCGCGCCAGTGCACg                                              <  2:993839/140‑1 (MQ=255)

                                                                                         ccGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCATTGATATGGCCATGAATGGCGTCGGATGTCGCGCCAGTGCACGc                                             >  2:1406476/1‑140 (MQ=255)

                                                                                              cATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACCTGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCATTGATATGGCCATGAATGGCGTCGGATGTCGCGCCAGTGCACGCATTAt                                        <  2:1017186/140‑1 (MQ=255)

                                                                                                   gcgcTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCATTGATATGGCCATGAATGGCGTCGGATGTCGCGCCAGTGCACGCATTATGGGCg                                   <  1:268608/140‑1 (MQ=255)

                                                                                                     gcTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCATTGATATGGCCATGAATGGCGTCGGATGTCGCGCCAGTGCACGCATTATGGGCGtt                                 <  2:750882/140‑1 (MQ=255)

                                                                                                      cTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCATTGATATGGCCATGAATGGCGTCGGATGTCGCGCCAGTGCACGCATTATGGGCGTTg                                >  1:425094/1‑140 (MQ=255)

                                                                                                         tctcTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCATTGATATGGCCATGAATGGCGTCGGATGTCGCGCCAGTGCAc                                               >  2:676590/1‑122 (MQ=255)

                                                                                                         tctcTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCATTGATATGGCCATGAATGGCGTCGGATGTCGCGCCAGTGCAc                                               <  1:676590/122‑1 (MQ=255)

                                                                                                         tctcTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCATTGATATGGCCATGAATGGCGTCGGATGTCGCGCCAGTGCACGCATTATGGGCGt                                  >  1:1221906/1‑135 (MQ=255)

                                                                                                         tctcTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCATTGATATGGCCATGAATGGCGTCGGATGTCGCGCCAGTGCACGCATTATGGGCGt                                  <  2:1221906/135‑1 (MQ=255)

                                                                                                         tctcTGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCATTGATATGGCCATGAATGGCGTCGGATGTCGCGCCAGTGCACGCATTATGGGCGTTGGcc                             >  2:1148213/1‑140 (MQ=255)

                                                                                                          ctctGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCATTGATATGGCCATGAATGGCGTCGGATGTCGCGCCAGTGCACGCATTATGGGCGTTGGCCt                            <  2:421904/140‑1 (MQ=255)

                                                                                                             tGCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCATTGATATGGCCATGAATGGCGTCGGATGTCGCGCCAGTGCACGCATTATGGGCGTTGGCCTCaa                         <  2:134815/140‑1 (MQ=255)

                                                                                                              gCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCATTGATATGGCCATGAATGGCGTCGGATGTCGCGCCAGTGCACGCATTATGGGCGTTGGCCTCAac                        >  2:1075706/1‑140 (MQ=255)

                                                                                                              gCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCATTGATATGGCCATGAATGGCGTCGGATGTCGCGCCAGTGCACGCATTATGGGCGTTGGCCTCAac                        <  1:1075706/140‑1 (MQ=255)

                                                                                                              gCTCTCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCATTGATATGGCCATGAATGGCGTCGGATGTCGCGCCAGTGCACGCATTATGGGCGTTGGCCTCAac                        >  1:709202/1‑140 (MQ=255)

                                                                                                               ctctCCTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCATTGATATGGCCATGAATGGCGTCGGATGTCGCGCCAGTGCACGCATTATGGGCGTTGGCCTCAaca                       <  2:420848/140‑1 (MQ=255)

                                                                                                                   ccTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCATTGATATGGCCATGAATGGCGTCGGATGTCGCGCCAGTGCACGCATTATGGGCGTTGGCCTCAaca                       <  1:142648/136‑1 (MQ=255)

                                                                                                                   ccTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCATTGATATGGCCATGAATGGCGTCGGATGTCGCGCCAGTGCACGCATTATGGGCGTTGGCCTCAaca                       >  2:142648/1‑136 (MQ=255)

                                                                                                                   ccTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCATTGATATGGCCATGAATGGCGTCGGATGTCGCGCCAGTGCACGCATTATGGGCGTTGGCCTCAACACGGt                   >  2:1465086/1‑140 (MQ=255)

                                                                                                                   ccTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCATTGATATGGCCATGAATGGCGTCGGATGTCGCGCCAGTGCACGCATTATGGGCGTTGGCCTCAACACGGt                   >  1:1457971/1‑140 (MQ=255)

                                                                                                                   ccTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCATTGATATGGCCATGAATGGCGTCGGATGTCGCGCCAGTGCACGCATTATGGGCGTTGGCCTCAACACGGt                   >  1:1415133/1‑140 (MQ=255)

                                                                                                                    cTTGCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCATTGATATGGCCATGAATGGCGTCGGATGTCGCGCCAGTGCACGCATTATGGGCGTTGGCCTCAACACGGtt                  >  1:1286476/1‑140 (MQ=255)

                                                                                                                       gCCGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCATTGATATGGCCATGAATGGCGTCGGATGTCGCGCCAGTGCACGCATTATGGGCGTTGGCCTCAACACGGTTTTa               >  2:564249/1‑140 (MQ=255)

                                                                                                                         cGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCATTGATATGGCCATGAATGGCGTCGGATGTCGCGCCAGTGCACGCATTATGGGCGTTGGCCt                            <  2:423574/125‑1 (MQ=255)

                                                                                                                         cGTAAAACATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCATTGATATGGCCATGAATGGCGTCGGATGTCGCGCCAGTGCACGCATTATGGGCGTTGGCCt                            >  1:423574/1‑125 (MQ=255)

                                                                                                                              aaCATGGCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCATTGATATGGCCATGAATGGCGTCGGATGTCGCGCCAGTGCACGCATTATGGGCGTTGGCCTCAACACGGTTTTACGTCACt        >  1:1253149/1‑140 (MQ=255)

                                                                                                                                    gCAACCACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCATTGATATGGCCATGAATGGCGTCGGATGTCGCGCCAGTGCACGCATTATGGGCGTTGGCCTCAACACGGTTTTACGTCACTTaaaaa  >  1:491320/1‑140 (MQ=255)

ATTTTAAGGTGCTTGCGTGGCTTCCATTTCCATCAGATGTCCTTCCTGCTCCGCTACTGAAGGCGTGGTGCGTAACGGCAAAAGCACTGCCGGACATCAGCGCTATCTCTGCTCTCCTTGCCGTAAAACATGGCAACTACAGTTCACTTACACCGCCTCTCAGCCCGGTAAGCACCAGAAAATCATTGATATGGCCATGAATGGCGTCGGATGTCGCGCCAGTGCACGCATTATGGGCGTTGGCCTCAACACGGTTTTACGTCACTTAAAAA  >  NC_000913/4518511‑4518782

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A