Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F28 I1 R1 151 83.1 2798978 99.4% 2782184 139.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,968,246 A→G M111V (ATG→GTG)  rfe → UDP‑N‑acetylglucosamine‑‑undecaprenyl‑phosphate N‑acetylglucosaminephosphotransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,968,2460AG100.0% 266.9 / NA 73M111V (ATG→GTG) rfeUDP‑N‑acetylglucosamine‑‑undecaprenyl‑phosphate N‑acetylglucosaminephosphotransferase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (39/34);  total (39/34)

TACTATATTCCGCATGCATCTCTCTATCTCGCTTGTGCCGGTGTGCTTGTTTTCATTGGCGCGCTGGATGACCGTTTTGATATCAGCGTAAAAATCCGTGCCACCATACAGGCCGCTGTTGGCATTGTTATGATGGTGTTCGGCAAGCTTTATCTCAGTAGCCTGGGTTATATCTTTGGCTCCTGGGAGATGGTGCTCGGACCGTTTGGTTACTTCCTGACGCTATTTGCCGTCTGGGCGGCCATTAATGCGTTCAACATGGTT  >  NC_000913/3968117‑3968380
                                                                                                                                 |                                                                                                                                      
tACTATATTCCGCATGCATCTCTCTATCTCGCTTGTGCCGGTGTGCTTGTTTTCATTGGCGCGCTGGATGACCGTTTTGATATCAGCGTAAAAATCCGTGCCACCATACAGGCCGCTGTTGGCATTGTTGTGATGGTGtt                                                                                                                              >  1:1035443/1‑140 (MQ=255)
   tataTTCCGCATGCATCTCTCTATCTCGCTTGTGCCGGTGTGCTTGTTTTCATTGGCGCGCTGGATGACCGTTTTGATATCAGCGTAAAAATCCGTGCCACCATACAGGCCGCTGTTGGCATTGTTGTGATGGTGTTCgg                                                                                                                           <  1:1022525/140‑1 (MQ=255)
     tatTCCGCATGCATCTCTCTATCTCGCTTGTGCCGGTGTGCTTGTTTTCATTGGCGCGCTGGATGACCGTTTTGATATCAGCGTAAAAATCCGTGCCACCATACAGGCCGCTGTTGGCATTGTTGTGATGgtg                                                                                                                                >  1:660451/1‑133 (MQ=255)
     tatTCCGCATGCATCTCTCTATCTCGCTTGTGCCGGTGTGCTTGTTTTCATTGGCGCGCTGGATGACCGTTTTGATATCAGCGTAAAAATCCGTGCCACCATACAGGCCGCTGTTGGCATTGTTGTGATGgtg                                                                                                                                <  2:660451/133‑1 (MQ=255)
     tatTCCGCATGCATCTCTCTATCTCGCTTGTGCCGGTGTGCTTGTTTTCATTGGCGCGCTGGATGACCGTTTTGATATCAGCGTAAAAATCCGTGCCACCATACAGGCCGCTGTTGGCATTGTTGTGATGGTGTTCGGCa                                                                                                                         <  1:789066/140‑1 (MQ=255)
     tatTCCGCATGCATCTCTCTATCTCGCTTGTGCCGGTGTGCTTGTTTTCATTGGCGCGCTGGATGACCGTTTTGATATCAGCGTAAAAATCCGTGCCACCATACAGGCCGCTGTTGGCATTGTTGTGATGGTGTTCGGCa                                                                                                                         <  2:216674/140‑1 (MQ=255)
         ccGCATGCATCTCTCTATCTCGCTTGTGCCGGTGTGCTTGTTTTCATTGGCGCGCTGGATGACCGTTTTGATATCAGCGTAAAAATCCGTGCCACCATACAGGCCGCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCt                                                                                                                     >  1:1330519/1‑140 (MQ=255)
          cGCATGCATCTCTCTATCTCGCTTGTGCCGGTGTGCTTGTTTTCATTGGCGCGCTGGATGACCGTTTTGATATCAGCGTAAAAATCCGTGCCACCATACAGGCCGCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCtt                                                                                                                    >  1:1051263/1‑140 (MQ=255)
          cGCATGCATCTCTCTATCTCGCTTGTGCCGGTGTGCTTGTTTTCATTGGCGCGCTGGATGACCGTTTTGATATCAGCGTAAAAATCCGTGCCACCATACAGGCCGCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCtt                                                                                                                    >  1:134083/1‑140 (MQ=255)
            catgcatCTCTCTATCTCGCTTGTGCCGGTGTGCTTGTTTTCATTGGCGCGCTGGATGACCGTTTTGATATCAGCGTAAAAATCCGTGCCACCATACAGGCCGCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCTTTa                                                                                                                  >  2:1036389/1‑140 (MQ=255)
            catgcatCTCTCTATCTCGCTTGTGCCGGTGTGCTTGTTTTCATTGGCGCGCTGGATGACCGTTTTGATATCAGCGTAAAAATCCGTGCCACCATACAGGCCGCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCTTTa                                                                                                                  <  1:1036389/140‑1 (MQ=255)
             atgcatCTCTCTATCTCGCTTGTGCCGGTGTGCTTGTTTTCATTGGCGCGCTGGATGACCGTTTTGATATCAGCGTAAAAATCCGTGCCACCATACAGGCCGCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCTTTAt                                                                                                                 >  1:1030228/1‑140 (MQ=255)
             atgcatCTCTCTATCTCGCTTGTGCCGGTGTGCTTGTTTTCATTGGCGCGCTGGATGACCGTTTTGATATCAGCGTAAAAATCCGTGCCACCATACAGGCCGCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCTTTAt                                                                                                                 >  1:1080727/1‑140 (MQ=255)
             atgcatCTCTCTATCTCGCTTGTGCCGGTGTGCTTGTTTTCATTGGCGCGCTGGATGACCGTTTTGATATCAGCGTAAAAATCCGTGCCACCATACAGGCCGCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCTTTAt                                                                                                                 >  1:283386/1‑140 (MQ=255)
             atgcatCTCTCTATCTCGCTTGTGCCGGTGTGCTTGTTTTCATTGGCGCGCTGGATGACCGTTTTGATATCAGCGTAAAAATCCGTGCCACCATACAGGCCGCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCTTTAt                                                                                                                 >  1:46351/1‑140 (MQ=255)
                 atCTCTCTATCTCGCTTGTGCCGGTGTGCTTGTTTTCATTGGCGCGCTGGATGACCGTTTTGATATCAGCGTAAAAATCCGTGCCACCATACAGGCCGCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCTTTATCTCa                                                                                                             <  1:960587/140‑1 (MQ=255)
                 atCTCTCTATCTCGCTTGTGCCGGTGTGCTTGTTTTCATTGGCGCGCTGGATGACCGTTTTGATATCAGCGTAAAAATCCGTGCCACCATACAGGCCGCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCTTTATCTCa                                                                                                             >  2:712177/1‑140 (MQ=255)
                 atCTCTCTATCTCGCTTGTGCCGGTGTGCTTGTTTTCATTGGCGCGCTGGATGACCGTTTTGATATCAGCGTAAAAATCCGTGCCACCATACAGGCCGCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCTTTATCTCa                                                                                                             <  2:1199565/140‑1 (MQ=255)
                 atCTCTCTATCTCGCTTGTGCCGGTGTGCTTGTTTTCATTGGCGCGCTGGATGACCGTTTTGATATCAGCGTAAAAATCCGTGCCACCATACAGGCCGCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCTTTATCTCa                                                                                                             <  2:902681/140‑1 (MQ=255)
                 atCTCTCTATCTCGCTTGTGCCGGTGTGCTTGTTTTCATTGGCGCGCTGGATGACCGTTTTGATATCAGCGTAAAAATCCGTGCCACCATACAGGCCGCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCTTTATCTCa                                                                                                             >  2:28282/1‑140 (MQ=255)
                    tctctATCTCGCTTGTGCCGGTGTGCTTGTTTTCATTGGCGCGCTGGATGACCGTTTTGATATCAGCGTAAAAATCCGTGCCACCATACAGGCCGCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCTTTATCTCAGTa                                                                                                          >  1:1262611/1‑140 (MQ=255)
                      tctATCTCGCTTGTGCCGGTGTGCTTGTTTTCATTGGCGCGCTGGATGACCGTTTTGATATCAGCGTAAAAATCCGTGCCACCATACAGGCCGCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCTTTATCTCAGTAGc                                                                                                        <  1:1291086/140‑1 (MQ=255)
                      tctATCTCGCTTGTGCCGGTGTGCTTGTTTTCATTGGCGCGCTGGATGACCGTTTTGATATCAGCGTAAAAATCCGTGCCACCATACAGGCCGCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCTTTATCTCAGTAGc                                                                                                        <  2:169155/140‑1 (MQ=255)
                       ctATCTCGCTTGTGCCGGTGTGCTTGTTTTCATTGGCGCGCTGGATGACCGTTTTGATATCAGCGTAAAAATCCGTGCCACCATACAGGCCGCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCTTTATCTCAGTAGcc                                                                                                       <  2:134083/140‑1 (MQ=255)
                       ctATCTCGCTTGTGCCGGTGTGCTTGTTTTCATTGGCGCGCTGGATGACCGTTTTGATATCAGCGTAAAAATCCGTGCCACCATACAGGCCGCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCTTTATCTCAGTAGcc                                                                                                       <  2:1330519/140‑1 (MQ=255)
                       ctATCTCGCTTGTGCCGGTGTGCTTGTTTTCATTGGCGCGCTGGATGACCGTTTTGATATCAGCGTAAAAATCCGTGCCACCATACAGGCCGCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCTTTATCTCAGTAGcc                                                                                                       <  1:17236/140‑1 (MQ=255)
                       ctATCTCGCTTGTGCCGGTGTGCTTGTTTTCATTGGCGCGCTGGATGACCGTTTTGATATCAGCGTAAAAATCCGTGCCACCATACAGGCCGCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCTTTATCTCAGTAGcc                                                                                                       <  2:1117514/140‑1 (MQ=255)
                           ctcGCTTGTGCCGGTGTGCTTGTTTTCATTGGCGCGCTGGATGACCGTTTTGATATCAGCGTAAAAATCCGTGCCACCATACAGGCCGCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCTTTATCTCa                                                                                                             <  1:446842/130‑1 (MQ=255)
                           ctcGCTTGTGCCGGTGTGCTTGTTTTCATTGGCGCGCTGGATGACCGTTTTGATATCAGCGTAAAAATCCGTGCCACCATACAGGCCGCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCTTTATCTCa                                                                                                             >  2:446842/1‑130 (MQ=255)
                             cGCTTGTGCCGGTGTGCTTGTTTTCATTGGCGCGCTGGATGACCGTTTTGATATCAGCGTAAAAATCCGTGCAACCATACAGGCCGCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCTTTATCTCAGTAGCCTGGGtt                                                                                                 >  2:67312/1‑140 (MQ=255)
                              gCTTGTGCCGGTGTGCTTGTTTTCATTGGCGCGCTGGATGACCGTTTTGATATCAGCGTAAAAATCCGTGCCACCATACAGGCCGCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCTTTATCTCAGTAGCCTGGGTta                                                                                                >  1:842990/1‑140 (MQ=255)
                               cTTGTGCTGGTGTGCTTGTTTTCATTGGCGCGCTGGATGACCGTTTTGATATCAGCGTAAAAATCCGTGCCACCATACAGGCCGCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCTTTATCTCAGTAGCCTGGGTtat                                                                                               >  2:1255593/1‑140 (MQ=255)
                               cTTGTGCCGGTGTGCTTGTTTTCATTGGCGCGCTGGATGACCGTTTTGATATCAGCGTAAAAATCCGTGCCACCATACAGGCCGCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCTTTATCTCAGTAGcc                                                                                                       <  1:291733/132‑1 (MQ=255)
                               cTTGTGCCGGTGTGCTTGTTTTCATTGGCGCGCTGGATGACCGTTTTGATATCAGCGTAAAAATCCGTGCCACCATACAGGCCGCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCTTTATCTCAGTAGcc                                                                                                       >  2:291733/1‑132 (MQ=255)
                               cTTGTGCCGGTGTGCTTGTTTTCATTGGCGCGCTGGATGACCGTTTTGATATCAGCGTAAAAATCCGTGCCACCATACAGGCCGCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCTTTATCTCAGTAGcc                                                                                                       >  1:543482/1‑132 (MQ=255)
                               cTTGTGCCGGTGTGCTTGTTTTCATTGGCGCGCTGGATGACCGTTTTGATATCAGCGTAAAAATCCGTGCCACCATACAGGCCGCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCTTTATCTCAGTAGcc                                                                                                       <  2:543482/132‑1 (MQ=255)
                               cTTGTGCCGGTGTGCTTGTTTTCATTGGCGCGCTGGATGACCGTTTTGATATCAGCGTAAAAATCCGTGCCACCATACAGGCCGCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCTTTATCTCAGTAGCCTGGGTtat                                                                                               >  1:97432/1‑140 (MQ=255)
                                  gtgCCGGTGTGCTTGTTTTCATTGGCGCGCTGGATGACCGTTTTGATATCAGCGTAAAAATCCGTGCCACCATACAGGCCGCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCTTTATCTCAGTAGCCTGGGTTATATc                                                                                            >  2:596686/1‑140 (MQ=255)
                                    gCCGGTGTGCTTGTTTTCATTGGCGCGCTGGATGACCGTTTTGATATCAGCGTAAAGATCCGTGCCACCATACAGGCCGCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCTTTATCTCAGTAGCCTGGGTTATATCtt                                                                                          >  1:984316/1‑140 (MQ=255)
                                    gCCGGTGTGCTTGTTTTCATTGGCGCGCTGGATGACCGTTTTGATATCAGCGTAAAAATCCGTGCCACCATACAGGCCGCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCTTTATCTCAGTAGCCTGGGTTATATCtt                                                                                          >  2:1016266/1‑140 (MQ=255)
                                    gCCGGTGTGCTTGTTTTCATTGGCGCGCTGGATGACCGTTTTGATATCAGCGTAAAAATCCGTGCCACCATACAGGCCGCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCTTTATCTCAGTAGCCTGGGTTATATCtt                                                                                          >  2:601231/1‑140 (MQ=255)
                                    gCCGGTGTGCTTGTTTTCATTGGCGCGCTGGATGACCGTTTTGATATCAGCGTAAAAATCCGTGCCACCATACAGGCCGCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCTTTATCTCAGTAGCCTGGGTTATATCtt                                                                                          <  1:28282/140‑1 (MQ=255)
                                      cGGTGTGCTTGTTTTCATTGGCGCGCTGGATGACCGTTTTGATATCAGCGTAAAGATCCGTGCCACCATACAGGCCGCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCTTTATCTCAGTAGCCTGGGTTATATCTTTg                                                                                        <  2:984316/140‑1 (MQ=255)
                                      cGGTGTGCTTGTTTTCATTGGCGCGCTGGATGACCGTTTTGATATCAGCGTAAAAATCCGTGCCACCATACAGGCCGCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCTTTATCTCAGTAGCCTGGGTTATATCTTTg                                                                                        <  1:1016266/140‑1 (MQ=255)
                                      cGGTGTGCTTGTTTTCATTGGCGCGCTGGATGACCGTTTTGATATCAGCGTAAAAATCCGTGCCACCATACAGGCCGCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCTTTATCTCAGTAGCCTGGGTTATATCTTTg                                                                                        <  1:1233225/140‑1 (MQ=255)
                                       ggTGTGCTTGTTTTCATTGGCGCGCTGGATGACCGTTTTGATATCAGCGTAAAAATCCGTGCCACCATACAGGCCGCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCTTTATCTCAGTAGCCTGGGTTATATCTTTgg                                                                                       <  2:384214/140‑1 (MQ=255)
                                        gtgtGCTTGTTTTCATTGGCGCGCTGGATGACCGTTTTGATATCAGCGTAAAAATCCGTGCCACCATACAGGCCGCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCTTTATCTCAGTAGCCTGGGTTATATCTTTGGc                                                                                      <  2:46351/140‑1 (MQ=255)
                                          gtgCTTGTTTTCATTGGCGCGCTGGATGACCGTTTTGATATCAGCGTAAAAATCCGTGCCACCATACAGGCCGCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCTTTATCTCAGTAGCCTGGGTTATATCTTTGGCTc                                                                                    <  1:712177/140‑1 (MQ=255)
                                          gtgCTTGTTTTCATTGGCGCGCTGGATGACCGTTTTGATATCAGCGTAAAAATCCGTGCCACCATACAGGACGCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCTTTATCTCAGTAGCCTGGGTTATATCTTTGGCTc                                                                                    <  2:176564/140‑1 (MQ=255)
                                            gCTTGTTTTCATTGGCGCGCTGGATGACCGTTTTGATATCAGCGTAAAAATCCGTGCCACCATACAGGCCGCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCTTTATCTCAGTAGCCTGGGTTATATCTTTGGCTCCt                                                                                  >  1:194313/1‑140 (MQ=255)
                                                   ttCATTGGCGCGCTGGATGACCGTTTTGATATCAGCGTAAAAATCCGTGCCACCATACAGGCCGCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCTTTATCTCAGTAGCCTGGGTTATATCTTTGGCTCCTGGGAGAt                                                                           <  2:194313/140‑1 (MQ=255)
                                                   ttCATTGGCGCGCTGGATGACCGTTTTGATATCAGCGTAAAAATCCGTGCCACCATACAGGCCGCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCTTTATCTCAGTAGCCTGGGTTATATCTTTGGCTCCTGGGAGAt                                                                           >  1:1176062/1‑140 (MQ=255)
                                                     cATTGGCGCGCTGGATGACCGTTTTGATATCAGCGTAAAAATCCGTGCCACCATACAGGCCGCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCTTTATCTCAGTAGCCTGGGTTATATCTTTGGCTCCTGGGAGATgg                                                                         >  1:1170871/1‑140 (MQ=255)
                                                           cgcgcTGGATGACCGTTTTGATATCAGCGTAAAAATCCGTGCCACCATACAGGCCGCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCTTTATCTCAGTAGCCTGGGTTATATCTTTGGCTCCTGGGAGATGGTGCTCg                                                                   <  2:1080727/140‑1 (MQ=255)
                                                             cgcTGGATGACCGTTTTGATATCAGCGTAAAAATCCGTGCCACCATACAGGCCGCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCTTTATCTCAGTAGCCTGGGTTATGTCTTTGGCTCCTGGGAGATGGTGCTCGGa                                                                 <  2:109088/140‑1 (MQ=255)
                                                                                      cGTAAAAATCCGTGCCACCATACAGGCCGCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCTTTATCTCAGTAGCCTGGGTTATATCTTTGGCTCCTGGGAGATGGTGCTCGGACCGTTTGGTTACTTCCTGACGCTAt                                        >  1:189249/1‑140 (MQ=255)
                                                                                      cGTAAAAATCCGTGCCACCATACAGGCCGCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCTTTATCTCAGTAGCCTGGGTTATATCTTTGGCTCCTGGGAGATGGTGCTCGGACCGTTTGGTTACTTCCTGACGCTAt                                        >  1:585454/1‑140 (MQ=255)
                                                                                      cGTAAAAATCCGTGCCACCATACAGGCCGCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCTTTATCTCAGTAGCCTGGGTTATATCTTTGGCTCCTGGGAGATGGTGCTCGGACCGTTTGGTTACTTCCTGACGCTAt                                        >  1:251635/1‑140 (MQ=255)
                                                                                          aaaaTCCGTGCCACCATACAGGCCGCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCTTTATCTCAGTAGCCTGGGTTATATCTTTGGCTCCTGGGAGATGGTGCTCGGACCGTTTGGTTACTTCCTGACGCTATTTGc                                    >  1:400411/1‑140 (MQ=255)
                                                                                                cGTGCCACCATACAGGCCGCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCTTTATCTCAGTAGCCTGGGTTATATCTTTGGCTCCTGGGAGATGGTGCTCGGACCGTTTGGTTACTTCCTGAc                                             >  2:537898/1‑125 (MQ=255)
                                                                                                cGTGCCACCATACAGGCCGCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCTTTATCTCAGTAGCCTGGGTTATATCTTTGGCTCCTGGGAGATGGTGCTCGGACCGTTTGGTTACTTCCTGAc                                             <  1:537898/125‑1 (MQ=255)
                                                                                                cGTGCCACCATACAGGCCGCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCTTTATCTCAGTAGCCTGGGTTATATCTTTGGCTCCTGGGAGATGGTGCTCGGACCGTTTGGTTACTTCCTGACGCTATTTACCGTCTg                              >  1:898358/1‑140 (MQ=255)
                                                                                                   gCCACCATACAGGCCGCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCTTTATCTCAGTAGCCTGGGTTATATCTTTGGCTCCTGGGAGATGGTGCTCGGACCGTTTGGTTACTTCCTGACGCTATTTGCCGTCTGggc                           <  2:1176062/140‑1 (MQ=255)
                                                                                                     caccaTACAGGCCGCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCTTTATCTCAGTAGCCTGGGTTATATCTTTGGCTCCTGGGAGATGGTGCTCGGACCGTTTGGTTACTTCCTGACGCTATTTGCCGTCTGggcgg                         <  2:251635/140‑1 (MQ=255)
                                                                                                     caccaTACAGGCCGCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCTTTATCTCAGTAGCCTGGGTTATATCTTTGGCTCCTGGGAGATGGTGCTCGGACCGTTTGGTTACTTCCTGACGCTATTTGCCGTCTGggcgg                         <  1:601231/140‑1 (MQ=255)
                                                                                                       ccaTACAGGCCGCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCTTTATCTCAGTAGCCTGGGTTATATCTTTGGCTCCTGGGAGATGGTGCTCGGACCGTTTGGTTACTTCCTGACGCTATTTGCCGTCTGGGCGGcc                       >  2:352331/1‑140 (MQ=255)
                                                                                                               gCCGCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCTTTATCTCAGTAGCCTGGGTTATATCTTTGGCTCCTGGGAGATGGTGCTCGGACCGTTTGGTTACTTCCTGACGCTATTTGCCGTCTGGGCGGCCa                      >  2:719630/1‑133 (MQ=255)
                                                                                                               gCCGCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCTTTATCTCAGTAGCCTGGGTTATATCTTTGGCTCCTGGGAGATGGTGCTCGGACCGTTTGGTTACTTCCTGACGCTATTTGCCGTCTGGGCGGCCa                      <  1:719630/133‑1 (MQ=255)
                                                                                                                ccGCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCTTTATCTCAGTAGCCTGGGTTATATCTTTGGCTCCTGGGAGATGGTGCTCGGACCGTTTGGTTACTTCCTGACGCTATTTGCCGTCTGGGCGGCCATTAATGCg              <  2:842990/140‑1 (MQ=255)
                                                                                                                 cGCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCTTTATCTCAGTAGCCTGGGTTATATCTTTGGCTCCTGGGAGATGGTGCTCGGACCGTTTGGTTACTTCCTGACGCTATTTGCCGTCTGGGCGGCCATTAATGCGt             >  2:608825/1‑140 (MQ=255)
                                                                                                                 cGCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCTTTATCTCAGTAGCCTGGGTTATATCTTTGGCTCCTGGGAGATGGTGCTCGGACCGTTTGGTTACTTCCTGACGCTATTTGCCGTCTGGGCGGCCATTAATGCGt             >  2:21910/1‑140 (MQ=255)
                                                                                                                  gCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCTTTATCTCAGTAGCCTGGGTTATATCTTTGGCTCCTGGGAGATGGTGCTCGGACCGTTTGGTTACTTCCTGACGCTATTTGCCGTCTGGGCGGCCATTAATGCGtt            >  2:494724/1‑140 (MQ=255)
                                                                                                                  gCTGTTGGCATTGTTGTGATGGTGTTCGGCAAGCTTTATCTCAGTAGCCTGGGTTATATCTTTGGCTCCTGGGAGATGGTGCTCGGACCGTTTGGTTACTTCCTGACGCTATTTGCCGTCTGGGCGGCCATTAATGCGtt            >  2:25437/1‑140 (MQ=255)
                                                                                                                     gTTGGCATTGTTGTGATGGTGTTCGGCAAGCTTTATCTCAGTAGCCTGGGTTATATCTTTGGCTCCTGGGAGATGGTGCTCGGACCGTTTGGTTACTTCCTGACGCTATTTGCCGTCTGGGCGGCCATTAATGCGTTCaa         <  2:1035443/140‑1 (MQ=255)
                                                                                                                            ttgttgTGATGGTGTTCGGCAAGCTTTATCTCAGTAGCCTGGGTTATATCTTTGGCTCCTGGGAGATGGTGCTCGGACCGTTTGGTTACTTCCTGACGCTATTTGCCGTCTGGGCGGCCATTAATGCGTTCAACATGGtt  <  1:25437/140‑1 (MQ=255)
                                                                                                                                 |                                                                                                                                      
TACTATATTCCGCATGCATCTCTCTATCTCGCTTGTGCCGGTGTGCTTGTTTTCATTGGCGCGCTGGATGACCGTTTTGATATCAGCGTAAAAATCCGTGCCACCATACAGGCCGCTGTTGGCATTGTTATGATGGTGTTCGGCAAGCTTTATCTCAGTAGCCTGGGTTATATCTTTGGCTCCTGGGAGATGGTGCTCGGACCGTTTGGTTACTTCCTGACGCTATTTGCCGTCTGGGCGGCCATTAATGCGTTCAACATGGTT  >  NC_000913/3968117‑3968380

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A