Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A9 F28 I1 R1	138	91.1	3071990	99.2%	3047414	138.5

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,027,458	T→C	V113A (GTT→GCT)	ghxQ →	guanine/hypoxanthine transporter GhxQ

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,027,458	0	T	C	98.7%	250.1 / ‑6.3	78	V113A (GTT→GCT)	ghxQ	guanine/hypoxanthine transporter GhxQ
Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (38/39); total (38/40)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

TGTTGCCACCTGTCTGGTCGCGGGCTTCGGCTCGTTGCTGATGGGATTATGGGCTAATTTGCCAATGGCGATTGGTTGCGCGATTTCCTTGACGGCGTTTACCGCATTCAGTCTGGTACTCGGGCAACAAATTAGCGTTCCTGTCGCACTGGGCGCGGTATTTCTGATGGGCGTCATCTTCACCGCCATTTCCGTAACCGGTGTGCGTACCTGGATCTTACGTAATTTGCCGATGGGTATCGCTCACGGTACAGGTATCGGTATCGGGCTGTT  >  NC_000913/3027321‑3027593

tgttgCCACCTGTCTGGTCGCGGGCTTCGGCTCGTTGCTGATGGGATTATGGGCTAATTTGCCAATGGCGATTGGTTGCGCGATTTCCTTGACGGCGTTTACCGCATTCAGTCTGGTACTCGGGCAACAAATTAGCGCTc                                                                                                                                       <  2:449667/140‑1 (MQ=255)

 gttgCCACCTGTCTGGTCGCGGGCTTCGGCTCGTTGCTGATGGGATTATGGGCTAATTTGCCAATGGCGATTGGTTGCGCGATTTCCTTGACGGCGTTTACCGCATTCAGTCTGGTACTCGGGCAACAAATTAGCGCTcc                                                                                                                                      >  2:1090146/1‑140 (MQ=255)

      cACCTGTCTGGTCGCGGGCTTCGGCTCGTTGCTGATGGGATTATGGGCTAATTTGCCAATGGCGATTGGTTGCGCGATTTCCTTGACGGCGTTTACCGCATTCAGTCTGGTACTCGGGCAACAAATTAGCGCTCCTGTCg                                                                                                                                 >  1:68309/1‑140 (MQ=255)

        ccTGTCTGGTCGCGGGCTTCGGCTCGTTGCTGATGGGATTATGGGCTAATTTGCCAATGGCGATTGGTTGCGCGATTTCCTTGACGGCGTTTACCGCATTCAGTCTGGTACTCGGGCAACAAATTAGCGCTCCTGTCGCa                                                                                                                               >  2:1277134/1‑140 (MQ=255)

        ccTGTCTGGTCGCGGGCTTCGGCTCGTTGCTGATGGGATTATGGGCTAATTTGCCAATGGCGATTGGTTGCGAGATTTCCTTGACGGCGTTTACCGCATTCAGTCTGGTACTCGGGCAACAAATTAGCGCTCCTGTCGCa                                                                                                                               <  1:1367740/140‑1 (MQ=255)

               ggTCGCGGGCTTCGGCTCGTTGCTGATGGGATTATGGGCTAATTTGCCAATGGCGATTGGTTGCGCGATTTCCTTGACGGCGTTTACCGCATTCAGTCTGGTACTCGGGCAACAAATTAGCGCTCCTGTCGCACTGGgcg                                                                                                                        <  1:816079/140‑1 (MQ=255)

               ggTCGCGGGCTTCGGCTCGTTGCTGATGGGATTATGGGCTAATTTGCCAATGGCGATTGGTTGCGCGATTTCCTTGACGGCGTTTACCGCATTCAGTCTGGTACTCGGGCAACAAATTAGCGCTCCTGTCGCACTGGgcg                                                                                                                        <  1:606860/140‑1 (MQ=255)

                gTCGCGGGCTTCGGCTCGTTGCTGATGGGATTATGGGCTAATTTGCCAATGGCGATTGGTTGCGCGATTTCCTTGACGGCGTTTACCGCATTCAGTCTGGTACTCGGGCAACAAATTAGCGCTCCTGTCGCACTGGgcgc                                                                                                                       <  1:1090146/140‑1 (MQ=255)

                gTCGCGGGCTTCGGCTCGTTGCTGATGGGATTATGGGCTAATTTGCCAATGGCGATTGGTTGCGCGATTTCCTTGACGGCGTTTACCGCATTCAGTCTGGTACTCGGGCAACAAATTAGCGCTCCTGTCGCACTGGgcgc                                                                                                                       <  1:646492/140‑1 (MQ=255)

                gTCGCGGGCTTCGGCTCGTTGCTGATGGGATTATGGGCTAATTTGCCAATGGCGATTGGTTGCGCGATTTCCTTGACGGCGTTTACCGCATTCAGTCTGGTACTCGGGCAACAAATTAGCGCTCCTGTCGCACTGGgcgc                                                                                                                       <  1:1281295/140‑1 (MQ=255)

                gTCGCGGGCTTCGGCTCGTTGCTGATGGGATTATGGGCTAATTTGCCAATGGCGATTGGTTGCGCGATTCCCTTGACGGCGTTTACCGCATTCAGTCTGGTACTCGGGCAACAAATTAGCGCTCCTGTCGCACTGGgcgc                                                                                                                       <  1:598929/140‑1 (MQ=255)

                  cgcgGGCTTCGGCTCGTTGCTGATGGGATTATGGGCTAATTTGCCAATGGCGATTGGTTGCGCGATTTCCTTGACGGCGTTTACCGCATTCAGTCTGGTACTCGGGCAACAAATTAGCGCTCCTGTCGCACTGGGCGCgg                                                                                                                     <  1:1255577/140‑1 (MQ=255)

                  cgcgGGCTTCGGCTCGTTGCTGATGGGATTATGGGCTAATTTGCCAATGGCGATTGGTTGCGCGATTTCCTTGACGGCGTTTACCGCATTCAGTCTGGTACTCGGGCAACAAATTAGCGCTCCTGTCGCACTGGGCGCgg                                                                                                                     <  2:1307138/140‑1 (MQ=255)

                   gcgGGCTTCGGCTCGTTGCTGATGGGATTATGGGCTAATTTGCCAATGGCGATTGGTTGCGCGATTTCCTTGACGGCGTTTACCGCATTCAGTCTGGTACTCGGGCAACAAATTAGCGCTCCTGTCGCACTGGGcgcg                                                                                                                      <  2:162955/138‑1 (MQ=255)

                   gcgGGCTTCGGCTCGTTGCTGATGGGATTATGGGCTAATTTGCCAATGGCGATTGGTTGCGCGATTTCCTTGACGGCGTTTACCGCATTCAGTCTGGTACTCGGGCAACAAATTAGCGCTCCTGTCGCACTGGGcgcg                                                                                                                      >  1:162955/1‑138 (MQ=255)

                   gcgGGCTTCGGCTCGTTGCTGATGGGATTATGGGCTAATTTGCCAATGGCGATTGGTTGCGCGATTTCCTTGACGGCGTTTACCGCATTCAGTCTGGTACTCGGGCAACAAATTAGCGCTCCTGTCGCACTGGGCGCGGt                                                                                                                    >  1:1532432/1‑140 (MQ=255)

                   gcgGGCTTCGGCTCGTTGCTGATGGGATTATGGGCTAATTTGCCAATGGCGATTGGTTGCGCGATTTCCTTGACGGCGTTTACCGCATTCAGTCTGGTACTCGGGCAACAAATTAGCGCTCCTGTCGCACTGGGCGCGGt                                                                                                                    >  1:743856/1‑140 (MQ=255)

                   gcgGGCTTCGGCTCGTTGCTGATGGGATTATGGGCTAATTTGCCAATGGCGATTGGTTGCGCGATTTCCTTGACGGCGTTTACCGCATTCAGTCTGGTACTCGGGCAACAAATTAGCGCTCCTGTCGCACTGGGCGCGGt                                                                                                                    >  1:1177357/1‑140 (MQ=255)

                     gggCTTCGGCTCGTTGCTGATGGGATTATGGGCTAATTTGCCAATGGCGATTGGTTGCGCGATTTCCTTGACGGCGTTTACCGCATTCAGTCTGGTACTCGGGCAACAAATTAGCGCTCCTGTCGCACTGGGCGCGGTAt                                                                                                                  >  1:1079510/1‑140 (MQ=255)

                          tCGGCTCGTTGCTGATGGGATTATGGGCTAATTTGCCAATGGCGATTGGTTGCGCGATTTCCTTGACGGCGTTTACCGCATTCAGTCTGGTACTCGGGCAACAAATTAGCGCTCCTGTCGCACTGGGCGCGGTATTTCTg                                                                                                             >  1:255009/1‑140 (MQ=255)

                                 gTTGCTGATGGGATTATGGGCTAATTTGCCAATGGCGATTGGTTGCGCGATTTCCTTGACGGCGTTTACCGCATTCAGTCTGGTACTCGGGCAACAAATTAGCGCTCCTGTCGCACTGGGCGCGGTATTTCTGATGGGCg                                                                                                      >  1:464676/1‑140 (MQ=255)

                                  ttGCTGATGGGATTATGGGCTAATTTGCCAATGGCGATTGGTTGCGCGATTTCCTTGACGGCGTTTACCGCATTCAGTCTGGTACTCGGGCAACAAATTAGCGCTCCTGTCGCACTGGGCGCGGTATTTCTGAt                                                                                                           >  1:766330/1‑134 (MQ=255)

                                  ttGCTGATGGGATTATGGGCTAATTTGCCAATGGCGATTGGTTGCGCGATTTCCTTGACGGCGTTTACCGCATTCAGTCTGGTACTCGGGCAACAAATTAGCGCTCCTGTCGCACTGGGCGCGGTATTTCTGAt                                                                                                           <  2:766330/134‑1 (MQ=255)

                                   tGCTGATGGGATTATGGGCTAATTTGCCAATGGCGATTGGTTGCGCGATTTCCTTGACGGCGTTTACCGCATTCAGTCTGGTACTCGGGCAACAAATTAGCGCTCCTGTCGCACTGGGCGCGGTATTTCTGATGGGCGTc                                                                                                    <  1:313338/140‑1 (MQ=255)

                                     cTGATGGGATTATGGGCTAATTTGCCAATGGCGATTGGTTGCGCGATTTCCTTGACGGCGTTTACCGCATTCAGTCTGGTACTCGGGCAACAAATTAGCGCTCCTGTCGCACTGGGCGCGGTATTTCTGATGGGCGTCAt                                                                                                  <  1:817467/140‑1 (MQ=255)

                                         tGGGATTATGGGCTAATTTGCCAATGGCGATTGGTTGCGCGATTTCCTTGACGGCGTTTACCGCATTCAGTCTGGTACTCGGGCAACAAATTAGCGCTCCTGTCGCACTGGGCGCGGTATTTCTGATGGGCGTCATCTTc                                                                                              <  1:1172585/140‑1 (MQ=255)

                                               tATGGGTTAATTTGGCAATGGCGATTGTTTGCGCGAGTTCCTTTAGGGCGTTTACCGCATTGAGTCTGGTACTCGGGCAACAAATTAGGGTTCCTGTCGCACTGGGCGCGGTATTTCTGATGGGCGTCATCTTCTCCGcc                                                                                        <  2:1283332/140‑1 (MQ=255)

                                               tATGGGCTAATTTGCCAATGGCGATTGGTTGCGCGATTTCCTTGACGGCGTTTACCGCATTCAGTCTGGTACTCGGGCAACAAATTAGCGCTCCTGTCGCACTGGGCGCGGTATTTCTGATGGGCGTCATCTTCACCGcc                                                                                        <  1:1355452/140‑1 (MQ=255)

                                               tATGGGCTAATTTGCCAATGGCGATTGGTTGCGCGATTTCCTTGACGGCGTTTACCGCATTCAGTCTGGTACTCGGGCAACAAATTAGCGCTCCTGTCGCACTGGGCGCGGTATTTCTGATGGGCGTCATCTTCACCGcc                                                                                        <  1:114645/140‑1 (MQ=255)

                                               tATGGGCTAATTTGCCAATGGCGATTGGTTGCGCGATTTCCTTGACGGCGTTTACCGCATTCAGTCTGGTACTCGGGCAACAAATTAGCGCTCCTGTCGCACTGGGCGCGGTATTTCTGATGGGCGTCATCTTCACCGcc                                                                                        <  1:538727/140‑1 (MQ=255)

                                                  gggCTAATTTGCCAATGGCGATTGGTTGCGCGATTTCCTTGACGGCGTTTACCGCATTCAGTCTGGTACTCGGGCAACAAATTAGCGCTCCTGTCGCACTGGGCGCGGTATTTCTGATGGGCGTCATCTTCa                                                                                             <  2:645573/132‑1 (MQ=255)

                                                  gggCTAATTTGCCAATGGCGATTGGTTGCGCGATTTCCTTGACGGCGTTTACCGCATTCAGTCTGGTACTCGGGCAACAAATTAGCGCTCCTGTCGCACTGGGCGCGGTATTTCTGATGGGCGTCATCTTCa                                                                                             >  1:645573/1‑132 (MQ=255)

                                                  gggCTAATTTGCCAATGGCGATTGGTTGCGCGATTTCCTTGACGGCGTTTACCGCATTCAGTCTGGTACTCGGGCAACAAATTAGCGCTCCTGTCGCACTGGGCGCGGTATTTCTGATGGGCGTCATCTTCACCGCCAtt                                                                                     >  1:1103587/1‑140 (MQ=255)

                                                  gggCTAATTTGCCAATGGCGATTGGTTGCGCGATTTCCTTGACGGCGTTTACCGCATTCAGTCTGGTACTCGGGCAACAAATTAGCGCTCCTGTCGCACTGGGCGCGGTATTTCTGATGGGCGTCATCTTCACCGCCAtt                                                                                     <  1:1277134/140‑1 (MQ=255)

                                                       aaTTTGCCAATGGCGATTGGTTGCGCGATTTCCTTGACGGCGTTTACCGCATTCAGTCTGGTACTCGGGCAACAAATTAGCGCTCCTGTCGCACTGGGCGCGGTATTTCTGATGGGCGTCATCTTCACCGCCATTTCCGt                                                                                >  2:1483475/1‑140 (MQ=255)

                                                        aTTTGCCAATGGCGATTGGTTGCGCGATTTCCTTGACGGCGTTTACCGCATTCAGTCTGGTACTCGGGCAACAAATTAGCGCTCCTGTCGCACTGGGCGCGGTATTTCTGATGGGCGTCATCTTCACCGCCATTTCCGTa                                                                               >  1:943769/1‑140 (MQ=255)

                                                           tGCCAATGGCGATTGGTTGCGCGATTTCCTTGACGGCGTTTACCGCATTCAGTCTGGTACTCGGGCAACAAATTAGCGCTCCTGTCGCACTGGGCGCGGTATTTCTGATGGGCGTCATCTTCACCGCCATTTCCGTAAcc                                                                            >  2:109971/1‑140 (MQ=255)

                                                              cAATGGCGATTGGTTGCGCGATTTCCTTGACGGCGTTTACCGCATTCAGTCTGGTACTCGGGCAACAAATTAGCGCTCCTGTCGCACTGGGCGCGGTATTTCTGATGGGCGTCATCTTCACCGCCATTTCCGTAACCGgt                                                                         >  1:245574/1‑140 (MQ=255)

                                                                 tGGCGATTGGTTGCGCGATTTCCTTGACGGCGTTTACCGCATTCAGTCTGGTACTCGGGCAACAAATTAGCGCTCCTGTCGCACTGGGCGCGGTATTTCTGATGGGCGTCATCTTCACCGCCATTTCCGTAACCGGtgtg                                                                      <  2:943769/140‑1 (MQ=255)

                                                                 gggCGATTGGTTGCGCGATTTCCTTGACGGCTTTTCCCGCATTCAGTCTGGTACTCGGGCAACAAATTAGCGCTCCTGTCGCACGGGGCGCGGTATTTCTGATGGGCGTCATCTTCACCGCCATTTCCGTAACCGGtgtg                                                                      <  2:743856/139‑1 (MQ=255)

                                                                  ggCGATTGGTTGCGCGATTTCCTTGACGGCGTTTACCGCATTCAGTCTGGTACTCGGGCAACAAATTAGCGCTCCTGTCGCACTGGGCGCGGTATTTCTGATGGGCGTCATCTTCACCGCCATTTCCGTAAc                                                                             >  1:1056167/1‑132 (MQ=255)

                                                                  ggCGATTGGTTGCGCGATTTCCTTGACGGCGTTTACCGCATTCAGTCTGGTACTCGGGCAACAAATTAGCGCTCCTGTCGCACTGGGCGCGGTATTTCTGATGGGCGTCATCTTCACCGCCATTTCCGTAAc                                                                             <  2:1056167/132‑1 (MQ=255)

                                                                  ggCGATTGGTTGCGCGATTTCCTTGACGGCGTTTACCGCATTCAGTCTGGTACTCGGGCAACAAATTAGCGCTCCTGTCGCACTGGGCGCGGTATTTCTGATGGGCGTCATCTTCACCGCCATTTCCGTAACCGGTGTGc                                                                     >  1:1450040/1‑140 (MQ=255)

                                                                   gCGATTGGTTGCGCGATTTCCTTGACGGCGTTTACCGCATTCAGTCTGGTACTCGGGCAACAAATTAGCGCTCCTGTCGCACTGGGCGCGGTTTTTCTGATGGGCGTCTTCTTCACCGCCATTTCCGTAACCGGTGTGCg                                                                    <  2:68309/140‑1 (MQ=255)

                                                                          gTTGCGCGATTTCCTTGACGGCGTTTACCGCATTCAGTCTGGTACTCGGGCAACAAATTAGCGCTCCTGTCGCACTGGGCGCGGTATTTCTGATGGGCGTCATCTTCACCGCCATTTCCGTAACCGGTGTGCGTACCTgg                                                             <  1:109971/140‑1 (MQ=255)

                                                                            tGCGCGATTTCCTTGACGGCGTTTACCGCATTCAGTCTGGTACTCGGGCAACAAATTAGCGCTCCTGTCGCACTGGGCGCGGTATTTCTGATGGGCGTCATCTTCACCGCCATTTCCGTAACCGGTGTGCGTACCTGGAt                                                           >  1:1445360/1‑140 (MQ=255)

                                                                            tGCGCGATTTCCTTGACGGCGTTTACCGCATTCAGTCTGGTACTCGGGCAACAAATTAGCGCTCCTGTCGCACTGGGCGCGGTATTTCTGATGGGCGTCATCTTCACCGCCATTTCCGTAACCGGTGTGCGTACCTGGAt                                                           <  2:464676/140‑1 (MQ=255)

                                                                             gcgcGATTTCCTTGACGGCGTTTACCGCATTCAGTCTGGTACTCGGGCAACAAATTAGCGCTCCTGTCGCACTGGGCGCGGTATTTCTGATGGGCGTCATCTTCACCGCCATTTCCGTAACCGGTGTGCGTACCTGGATc                                                          >  1:421106/1‑140 (MQ=255)

                                                                             gcgcGATTTCCTTGACGGCGTTTACCGCATTCAGTCTGGTACTCGGGCAACAAATTAGCGCTCCTGTCGCACTGGGCGCGGTATTTCTGATGGGCGTCATCTTCACCGCCATTTCCGTAACCGGTGTGCGTACCTGGATc                                                          >  2:436934/1‑140 (MQ=255)

                                                                                cgATTTCCTTGACGGCGTTTACCGCATTCAGTCTGGTACTCGGGCAACAAATTAGCGCTCCTGTCGCACTGGGCGCGGTATTTCTGATGGGCGTCATCTTCACCGCCATTTCCGTAACCGGTGTGCGTACCTGGATCTTa                                                       >  2:1023284/1‑140 (MQ=255)

                                                                                cgATTTCCTTGACGGCGTTTACCGCATTCAGTCTGGTACTCGGGCAACAAATTAGCGCTCCTGTCGCACTGGGCGCGGTATTTCTGATGGGCGTCATCTTCACCGCCATTTCCGTAACCGGTGTGCGTACCTGGATCTTa                                                       >  2:1216375/1‑140 (MQ=255)

                                                                                           aCGGCGTTTACCGCATTCAGTCTGGTACTCGGGCAACAAATTAGCGCTCCTGTCGCACTGGGCGCGGTATTTCTGATGGGCGTCATCTTCACCGCCATTTCCGTAACCGGTGTGCGTACCTGGATCTTACGTAATTTGcc                                            >  1:1121950/1‑140 (MQ=255)

                                                                                              gCGTTTACCGCATTCAGTCTGGTACTCGGGCAACAAATTAGCGCTCCTGTCGCACTGGGCGCGGTATTTCTGATGGGCGTCATCTTCACCGCCATTTCCGTAACCGGTGTGCGTACCTGGATCTTACGTAATTTGCCGAt                                         <  1:1216375/140‑1 (MQ=255)

                                                                                               cGTTTACCGCATTCAGTCTGGTACTCGGGCAACAAATTAGCGCTCCTGTCGCACTGGGCGCGGTATTTCTGATGGGCGTCATCTTCACCGCCATTTCCGTAACCGGTGTGCGTACCTGGATCTTACGTAATTTGCCGATg                                        >  1:469042/1‑140 (MQ=255)

                                                                                                        cATTCAGTCTGGTACTCGGGCAACAAATTAGCGCTCCTGTCGCACTGGGCGCGGTATTTCTGATGGGCGTCATCTTCACCGCCATTTCCGTAACCGGTGTGCGTACCTGGATCTTACGTAATTTGCCGATGGGTATCGCt                               <  1:1483475/140‑1 (MQ=255)

                                                                                                         aTTCAGTCTGGTACTCGGGCAACAAATTAGCGCTCCTGTCGCACTGGGCGCGGTATTTCTGATGGGCGTCATCTTCACCGCCATTTCCGTAACCGGTGTGCGTACCTGGATCTTACGTAATTTGCCGATGGGTATCGCTc                              >  2:1220540/1‑140 (MQ=255)

                                                                                                          ttCAGTCTGGTACTCGGGCAACAAATTAGCGCTCCTGTCGCACTGGGCGCGGTATTTCTGATGGGCGTCATCTTCACCGCCATTTCCGTAACCGGTGTGCGTACCTGGATCTTACGTAATTTGCCGATGGGTATCGCTCa                             <  2:421106/140‑1 (MQ=255)

                                                                                                           tCAGTCTGGTACTCGGGCAACAAATTAGCGCTCCTGTCGCACTGGGCGCGGTATTTCTGATGGGCGTCATCTTCACCGCCATTTCCGTAACCGGTGTGCGTACCTGGATCTTACGTAATTTGCCGATGGGTATCGCTCAc                            <  1:436934/140‑1 (MQ=255)

                                                                                                              gTCTGGTACTCGGGCAACAAATTAGCGCTCCTGTCGCACTGGGCGCGGTATTTCTGATGGGCGTCATCTTCACCGCCATTTCCGTAACCGGTGTGCGTACCTGGATCTTACGTAATTTGCCGATGGGTATCGCTCACGGt                         <  1:663689/140‑1 (MQ=255)

                                                                                                               tCTGGTACTCGGGCAACAAATTAGCGCTCCTGTCGCACTGGGCGCGGTATTTCTGATGGGCGTCATCTTCACCGCCATTTCCGTAACCGGTGTGCGTACCTGGATCTTACGTAATTTGCCGATGGGTATCGCTCACGGTa                        <  1:997314/140‑1 (MQ=255)

                                                                                                               tCTGGTACTCGGGCAACAAATTAGCGCTCCTGTCGCACTGGGCGCGGTATTTCTGATGGGCGTCATCTTCACCGCCATTTCCGTAACCGGTGTGCGTACCTGGATCTTACGTAATTTGCCGATGGGTATCGCTCACGGTa                        >  1:1442179/1‑140 (MQ=255)

                                                                                                                cTGGTACTCGGGCAACAAATTAGCGCTCCTGTCGCACTGGGCGCGGTATTTCTGATGGGCGTCATCTTCACCGCCATTTCCGTAACCGGTGTGCGTACCTGGATCTTACGTAATTTGCCGATGGGTATCGCTCACGGTa                        <  1:547495/139‑1 (MQ=255)

                                                                                                                cTGGTACTCGGGCAACAAATTAGCGCTCCTGTCGCACTGGGCGCGGTATTTCTGATGGGCGTCATCTTCACCGCCATTTCCGTAACCGGTGTGCGTACCTGGATCTTACGTAATTTGCCGATGGGTATCGCTCACGGTa                        >  2:547495/1‑139 (MQ=255)

                                                                                                                 tGGTACTCGGGCAACAAATTAGCGCTCCTGTCGCACTGGGCGCGGTATTTCTGATGGGCGTCATCTTCACCGCCATTTCCGTAACCGGTGTGCGTACCTGGATCTTACGTAATTTGCCGATGGGTATCGCTCACGGTACa                      <  1:1220540/140‑1 (MQ=255)

                                                                                                                 tGGTACTCGGGCAACAAATTAGCGCTCCTGTCGCACTGGGCGCGGTATTTCTGATGGGCGTCATCTTCACCGCCATTTCCGTAACCGGTGTGCGTACCTGGATCTTACGTAATTTGCCGATGGGTATCGCTCACGGTACa                      <  2:1079510/140‑1 (MQ=255)

                                                                                                                  ggTACTCGGGCAACAAATTAGCGCTCCTGTCGCACTGGGCGCGGTATTTCTGATGGGCGTCATCTTCACCGCCATTTCCGTAACCGGTGTGCGTACCTGGATCTTACGTAATTTGCCGATGGGTATCGCTCACGGTACAg                     <  1:24231/140‑1 (MQ=255)

                                                                                                                   gTACTCGGGCAACAAATTAGCGCTCCTGTCGCACTGGGCGCGGTATTTCTGATGGGCGTCATCTTCACCGCCATTTCCGTAACCGGTGTGCGTACCTGGATCTTACGTAATTTGCCGATGGGTa                                    >  2:684283/1‑124 (MQ=255)

                                                                                                                   gTACTCGGGCAACAAATTAGCGCTCCTGTCGCACTGGGCGCGGTATTTCTGATGGGCGTCATCTTCACCGCCATTTCCGTAACCGGTGTGCGTACCTGGATCTTACGTAATTTGCCGATGGGTa                                    <  1:684283/124‑1 (MQ=255)

                                                                                                                    tACTCGGGCAACAAATTAGCGCTCCTGTCGCACTGGGCGCGGTATTTCTGATGGGCGTCATCTTCACCGCCATTTCCGTAACCGGTGTGCGTACCTGGATCTTACGTAATTTGCCGATGGGTATCGCTCACGGTACAggt                   >  2:1233866/1‑140 (MQ=255)

                                                                                                                    tACTCGGGCAACAAATTAGCGCTCCTGTCGCACTGGGCGCGGTATTTCTGATGGGCGTCATCTTCACCGCCATTTCCGTAACCGGTGTGCGTACCTGGATCTTACGTAATTTGCCGATGGGTATCGCTCACGGTACAggt                   >  1:1364670/1‑140 (MQ=255)

                                                                                                                      cTCGGGCAACAAATTAGCGCTCCTGTCGCACTGGGCGCGGTATTTCTGATGGGCGTCATCTTCACCGCCATTTCCGTAACCGGTGTGCGTACCTGGATCTTACGTAATTTGCCGATGGGTATCGCTCACGGTACAggtat                 <  2:414661/140‑1 (MQ=255)

                                                                                                                         gggCAACAAATTAGCGCTCCTGTCGCACTGGGCGCGGTATTTCTGATGGGCGTCATCTTCACCGCCATTTCCGTAACCGGTGTGCGTACCTGGATCTTACGTAATTTGCCGATGGGTATCGCTCa                             >  1:284822/1‑125 (MQ=255)

                                                                                                                         gggCAACAAATTAGCGCTCCTGTCGCACTGGGCGCGGTATTTCTGATGGGCGTCATCTTCACCGCCATTTCCGTAACCGGTGTGCGTACCTGGATCTTACGTAATTTGCCGATGGGTATCGCTCa                             <  2:284822/125‑1 (MQ=255)

                                                                                                                         gggCAACAAATTAGCGCTCCTGTCGCACTGGGCGCGGTATTTCTGATGGGCGTCATCTTCACCGCCATTTCCGTAACCGGTGTGCGTACCTGGATCTTACGTAATTTGCCGATGGGTATCGCTCACGGTACAggtatcgg              >  1:186144/1‑140 (MQ=255)

                                                                                                                         gggCAACAAATTAGCGCTCCTGTCGCACTGGGCGCGGTATTTCTGATGGGCGTCATCTTCACCGCCATTTCCGTAACCGGTGTGCGTACCTGGATCTTACGTAATTTGCCGATGGGTATCGCTCACGGTACAggtatcgg              >  1:158181/1‑140 (MQ=255)

                                                                                                                             aacaaATTAGCGCTCCTGTCGCACTGGGCGCGGTATTTCTGATGGGCGTCATCTTCACCGCCATTTCCGTAACCGGTGTGCGTACCTGGATCTTACGTAATTTGCCGATGGGTATCGCTCACGGTACAggtatcggtatc          >  2:815401/1‑140 (MQ=255)

                                                                                                                              acaaATTAGCGCTCCTGTCGCACTGGGCGCGGTATTTCTGATGGGCGTCATCTTCACCGCCATTTCCGTAACCGGTGTGCGTACCTGGATCTTACGTAATTTGCCGATGGGTATCGCTCACGGTACAGgtatcggtatcg         >  1:1300722/1‑140 (MQ=255)

                                                                                                                                    tAGCGCTCCTGTCGCACTGGGCGCGGTATTTCTGATGGGCGTCATCTTCACCGCCATTTCCGTAACCGGTGTGCGTACCTGGATCTTACGTAATTTGCCGATGGGTATCGCTCACGGTACAGGTATCGGTATCGGGCTGt   <  2:438350/140‑1 (MQ=255)

                                                                                                                                     aGCGCTCCTGTCGCACTGGGCGCGGTATTTCTGATGGGCGTCATCTTCACCGCCATTTCCGTAACCGGTGTGCGTACCTGGATCTTACGTAATTTGCCGATGGGTATCGCTCACGGTACAGGTATCGGTATCGGGCTGtt  >  1:719236/1‑140 (MQ=255)

TGTTGCCACCTGTCTGGTCGCGGGCTTCGGCTCGTTGCTGATGGGATTATGGGCTAATTTGCCAATGGCGATTGGTTGCGCGATTTCCTTGACGGCGTTTACCGCATTCAGTCTGGTACTCGGGCAACAAATTAGCGTTCCTGTCGCACTGGGCGCGGTATTTCTGATGGGCGTCATCTTCACCGCCATTTCCGTAACCGGTGTGCGTACCTGGATCTTACGTAATTTGCCGATGGGTATCGCTCACGGTACAGGTATCGGTATCGGGCTGTT  >  NC_000913/3027321‑3027593

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A