Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A9 F28 I1 R1 138 91.1 3071990 99.2% 3047414 138.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,329,001 C→T P623S (CCC→TCC)  crfC → clamp‑binding sister replication fork colocalization protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,329,0010CT100.0% 306.0 / NA 86P623S (CCC→TCC) crfCclamp‑binding sister replication fork colocalization protein
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (39/47);  total (39/47)

TTTTTCACGGCGTAGTTCCCCACTTCAACACTCGCCAGCTGTTCAGTGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTCGATGAAT  >  NC_000913/4328867‑4329136
                                                                                                                                      |                                                                                                                                       
tttttCACGGCGTAGTTCCCCACTTCAACACTCGCCAGCTGTTCAGTGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGAc                                                                                                                                    <  1:328927/140‑1 (MQ=255)
 ttttCACGGCGTAGTTCCCCACTTCAACACTCGCCAGCTGTTCAGTGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACt                                                                                                                                   <  2:1153946/140‑1 (MQ=255)
     cACGGCGTAGTTCCCCACTTCAACACTCGCCAGCTGTTCAGTGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTgggg                                                                                                                               <  1:1500006/140‑1 (MQ=255)
        ggCGTAGTTCCCCACTTCAACACTCGCCAGCTGTTCAGTGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACg                                                                                                                            <  1:897573/140‑1 (MQ=255)
          cGTAGTTCCCCACTTCAACACTCGCCAGCTGTTCAGTGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACggg                                                                                                                          <  1:581418/140‑1 (MQ=255)
          cGTAGTTCCCCACTTCAACACTCGCCAGCTGTTCAGTGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACggg                                                                                                                          >  2:1154921/1‑140 (MQ=255)
            tAGTTCCCCACTTCAACACTCGCCAGCTGTTCAGTGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGa                                                                                                                        >  1:570690/1‑140 (MQ=255)
            tAGTTCCCCACTTCAACACTCGCCAGCTGTTCAGTGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGa                                                                                                                        >  1:1061849/1‑140 (MQ=255)
             aGTTCCCCACTTCAACACTCGCCAGCTGTTCAGTGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGaa                                                                                                                       >  1:210830/1‑140 (MQ=255)
               ttCCCCACTTCAACACTCGCCAGCTGTTCAGTGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAAt                                                                                                                     >  2:1176083/1‑140 (MQ=255)
                  cccACTTCAACACTCGCCAGCTGTTCAGTGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATgag                                                                                                                  <  1:1104759/140‑1 (MQ=255)
                  cccACTTCAACACTCGCCAGCTGTTCAGTGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATgag                                                                                                                  >  2:231281/1‑140 (MQ=255)
                    cACTTCAACACTCGCCAGCTGTTCAGTGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGaa                                                                                                                >  1:444013/1‑140 (MQ=255)
                      cTTCAACACTCGCCAGCTGTTCAGTGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAAt                                                                                                              >  2:645105/1‑140 (MQ=255)
                      cTTCAACACTCGCCAGCTGTTCAGTGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAAt                                                                                                              >  2:1204349/1‑140 (MQ=255)
                       ttCAACACTCGCCAGCTGTTCAGTGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATc                                                                                                             >  2:45467/1‑140 (MQ=255)
                        tCAACACTCGCCAGCTGTTCAGTGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCa                                                                                                            <  2:444013/140‑1 (MQ=255)
                         cAACACTCGCCAGCTGTTCAGTGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCTCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCAc                                                                                                           >  1:700720/1‑140 (MQ=255)
                         cAACACTCGCCAGCTGTTCAGTGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCAc                                                                                                           >  2:1506637/1‑140 (MQ=255)
                         cAACACTCGCCAGCTGTTCAGTGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCAc                                                                                                           >  1:1309400/1‑140 (MQ=255)
                         cAACACTCGCCAGCTGTTCAGGGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCAc                                                                                                           >  2:1087069/1‑140 (MQ=255)
                              cTCGCCAGCTGTTCAGTGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCTCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCACCGACa                                                                                                      <  2:700720/140‑1 (MQ=255)
                               tCGCCAGCTGTTCAGTGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCACCGACAg                                                                                                     >  1:585121/1‑140 (MQ=255)
                                cGCCAGCTGTTCAGTGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGa                                                                                                    <  2:1322229/140‑1 (MQ=255)
                                 gCCAGCTGTTCAGTGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGaa                                                                                                   >  2:23930/1‑140 (MQ=255)
                                  ccAGCTGTTCAGTGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGaaa                                                                                                  <  2:210830/140‑1 (MQ=255)
                                  ccAGCTGTTCAGTGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGaaa                                                                                                  <  1:1176083/140‑1 (MQ=255)
                                  ccAGCTGTTCAGTGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGaaa                                                                                                  <  1:1087069/140‑1 (MQ=255)
                                    aGCTGTTCAGTGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACg                                                                                                <  1:1154921/140‑1 (MQ=255)
                                    aGCTGTTCAGTGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACg                                                                                                <  2:803936/140‑1 (MQ=255)
                                      cTGTTCAGTGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCATAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGt                                                                                              <  1:1380932/140‑1 (MQ=255)
                                         ttCAGTGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCGCGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGGCTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGa                                                                                           >  2:1053934/1‑140 (MQ=255)
                                         ttCAGTGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGaaa                                                                                                  >  2:1104777/1‑133 (MQ=255)
                                         ttCAGTGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGaaa                                                                                                  <  1:1104777/133‑1 (MQ=255)
                                         ttCAGTGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGa                                                                                           <  2:570690/140‑1 (MQ=255)
                                         ttCAGTGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGa                                                                                           >  1:1028514/1‑140 (MQ=255)
                                            aGTGAAGTAATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTa                                                                                        <  1:886871/140‑1 (MQ=255)
                                             gTGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTAc                                                                                       >  2:335277/1‑140 (MQ=255)
                                              tGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACa                                                                                      <  1:618959/140‑1 (MQ=255)
                                              tGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACa                                                                                      <  1:231281/140‑1 (MQ=255)
                                                 aGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACa                                                                                      <  2:1323737/137‑1 (MQ=255)
                                                 aGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACa                                                                                      >  1:1323737/1‑137 (MQ=255)
                                                   tCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGaaa                                                                                                  <  1:1289430/123‑1 (MQ=255)
                                                   tCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGaaa                                                                                                  >  2:1289430/1‑123 (MQ=255)
                                                   tCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAgtggg                                                                                 >  1:609250/1‑138 (MQ=255)
                                                   tCATTTCGCCCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGAGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGCCGGGGAAATGAGAAATCACCGACAGAAACGGGTGATTACActgtg                                                                                 >  2:578685/1‑140 (MQ=255)
                                                         cgggcCAGGAAGCAACGGACGGGCAGAGCACGGGTTTAGGGGTTGTGCGTGAGACTTTTTCGCGCTGGGTGAAACAGGCCGGCTGGGGGCGGGGAAATGAGAAATTCCCGGCAGAAACGGTTGAATACAGTGTGTTGCaa                                                                           <  2:609250/137‑1 (MQ=255)
                                                         cgcgCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCag                                                                           <  1:1023577/140‑2 (MQ=255)
                                                          gcgcCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAAc                                                                          <  2:1049936/140‑1 (MQ=255)
                                                             ccAGGAAGCAGCGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAg                                                                       >  1:162169/1‑140 (MQ=255)
                                                             ccAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACa                                                                                      <  2:119351/125‑1 (MQ=255)
                                                             ccAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACa                                                                                      >  1:119351/1‑125 (MQ=255)
                                                               aGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCa                                                                     <  1:1204349/140‑1 (MQ=255)
                                                                 gAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCAtt                                                                   <  2:1028514/140‑1 (MQ=255)
                                                                        cGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCa                                                            <  2:188497/140‑1 (MQ=255)
                                                                        cGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCa                                                            >  2:456749/1‑140 (MQ=255)
                                                                          gACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCaa                                                                           <  2:548087/123‑1 (MQ=255)
                                                                          gACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCaa                                                                           >  1:548087/1‑123 (MQ=255)
                                                                            cGAGCAGAGCACGCGTTTATGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAg                                                        <  1:1105536/140‑1 (MQ=255)
                                                                            cGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACg                                                                         <  1:1343863/123‑1 (MQ=255)
                                                                            cGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACg                                                                         >  2:1343863/1‑123 (MQ=255)
                                                                             gagcagagcaCGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGTGCAGAAGt                                                       >  1:1122039/1‑140 (MQ=255)
                                                                               gcagagcaCGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCg                                                     <  1:645105/140‑1 (MQ=255)
                                                                                cagagcaCGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGTGCAGAAGTCGa                                                    <  2:1122039/140‑1 (MQ=255)
                                                                                   agcaCGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGAtct                                                 <  2:1061849/140‑1 (MQ=255)
                                                                                     caCGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGAt                                                   <  1:123263/136‑1 (MQ=255)
                                                                                     caCGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGAt                                                   >  2:123263/1‑136 (MQ=255)
                                                                                     caCGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATctct                                               >  2:648059/1‑140 (MQ=255)
                                                                                     caCGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATctct                                               >  1:946249/1‑140 (MQ=255)
                                                                                     caCGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATctct                                               >  1:1188102/1‑140 (MQ=255)
                                                                                        gcgTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTAtt                                            <  2:1309400/140‑1 (MQ=255)
                                                                                        gcgTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTAtt                                            >  1:451744/1‑140 (MQ=255)
                                                                                        gcgTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTAtt                                            >  2:1151428/1‑140 (MQ=255)
                                                                                           tttAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGcc                                         <  2:162169/140‑1 (MQ=255)
                                                                                           tttAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGcc                                         <  2:451744/140‑1 (MQ=255)
                                                                                                      tgCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCt                              >  2:1303765/1‑140 (MQ=255)
                                                                                                      tgCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCt                              >  1:282568/1‑140 (MQ=255)
                                                                                                       gCGTGAGACTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTa                             <  1:340592/140‑1 (MQ=255)
                                                                                                           gagaCTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGt                         <  1:692381/140‑1 (MQ=255)
                                                                                                              aCTTTTTCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCt                      >  1:841487/1‑140 (MQ=255)
                                                                                                                tttttCGCGCTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTgg                    >  1:1141000/1‑140 (MQ=255)
                                                                                                                      gcgcTGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGc              <  1:1151428/140‑1 (MQ=255)
                                                                                                                          tGGTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGt          <  1:335277/140‑1 (MQ=255)
                                                                                                                           ggTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTc         <  1:1303765/140‑1 (MQ=255)
                                                                                                                            gTTGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTTTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTCg        <  2:946249/140‑1 (MQ=255)
                                                                                                                              tGAATCAGTCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTAGAt      <  1:45467/140‑1 (MQ=255)
                                                                                                                                  tCAGTCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTCGATGAAt  <  2:600547/140‑1 (MQ=255)
                                                                                                                                  tCAGTCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTCGATGAAt  <  1:1053934/140‑1 (MQ=255)
                                                                                                                                      |                                                                                                                                       
TTTTTCACGGCGTAGTTCCCCACTTCAACACTCGCCAGCTGTTCAGTGAAGTCATTTCGCGCCAGGAAGCAACGGACGAGCAGAGCACGCGTTTAGGCGTTGTGCGTGAGACTTTTTCGCGCTGGTTGAATCAGCCCGACTGGGGACGGGGAAATGAGAAATCACCGACAGAAACGGTTGATTACAGTGTGTTGCAACGAGCATTAAGCGCAGAAGTCGATCTCTATTGCCAACAAATGGCTAAAGTTCTGGCAGAGCAGGTCGATGAAT  >  NC_000913/4328867‑4329136

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A