Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F28 I1 R1 172 67.8 2301510 98.9% 2276193 138.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,342,809 A→G K179K (AAA→AAG)  kdsC → 3‑deoxy‑D‑manno‑octulosonate 8‑phosphate phosphatase KdsC

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,342,8090AG98.6% 234.2 / ‑4.1 71K179K (AAA→AAG) kdsC3‑deoxy‑D‑manno‑octulosonate 8‑phosphate phosphatase KdsC
Reads supporting (aligned to +/- strand):  ref base A (0/0);  major base G (24/46);  minor base T (0/1);  total (24/47)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.29e-01

AAAGTGGGTTTAAGCGTCGCCGTGGCCGATGCGCATCCACTGTTGATCCCGCGCGCCGATTACGTGACGCGCATTGCTGGCGGTCGTGGCGCAGTGCGCGAAGTTTGCGACTTATTACTCCTGGCGCAGGGCAAACTGGATGAAGCCAAAGGGCAATCGATATGAGTAAAGCCAGACGTTGGGTTATCATTGTGCTATCACTGGCGGTTCTGGTGATGATCGGCATTAATATGGCCGAAAAAGACGATACCGCCCAGGTGGTCGTCAAC  >  NC_000913/3342675‑3342943
                                                                                                                                      |                                                                                                                                      
aaaGTGGGTTTAAGCGTCGCCGTGGCCGATGCGCATCCACTGTTGATCCCGCGCGCCGATTACGTGACGCGCATTGCTGGCGGTCGTGGCGCAGTGCGCGAAGTTTGCGACTTATTACTCCTGGCGCAGGGCAAGCTGGa                                                                                                                                   <  1:830857/140‑1 (MQ=255)
 aaGTGGGTTTAAGCGTCGCCGTGGCCGATGCGCATCCACTGTTGATCCCGCGCGCCGATTACGTGACGCGCATTGCTGGCGGTCGTGGCGCAGTGCGCGAAGTTTGCGACTTATTACTCCTGGCGCAGGGCAAGCTGGAt                                                                                                                                  >  1:1109485/1‑140 (MQ=255)
 aaGTGGGTTTAAGCGTCGCCGTGGCCGATGCGCATCCACTGTTGATCCCGCGCGCCGATTACGTGACGCGCATTGCTGGCGGTCGTGGCGCAGTGCGCGAAGTTTGCGACTTATTACTCCTGGCGCAGGGCAAGCTGGAt                                                                                                                                  <  2:87805/140‑1 (MQ=255)
  aGTGGGTTTAAGCGTCGCCGTGGCCGATGCGCATCCACTGTTGATCCCGCGCGCCGATTACGTGACGCGCATTGCTGGCGGTCGTGGCGCAGTGCGCGAAGTTTGCGACTTATTACTCCTGGCGCAGGGCAAGCTGGATg                                                                                                                                 <  1:621866/140‑1 (MQ=255)
      ggTTTAAGCGTCGCCGTGGCCGATGCGCATCCACTGTTGATCCCGCGCGCCGATTACGTGACGCGCATTGCTGGCGGTCGTGGCGCAGTGCGCGAAGTTTGCGACTTATTACTCCTGGCGCAGGGCAAGCTGGATGAAGc                                                                                                                             >  1:349365/1‑140 (MQ=255)
      ggTTTAAGCGTCGCCGTGGCCGATGCGCATCCACTGTTGATCCCGCGCGCCGATTACGTGACGCGCATTGCTGGCGGTCGGTGCCTAGTGCGCGAATGTTGCGGCCTTTTACTCCCCGTGGGGGGCAATCTGGGTGGAGc                                                                                                                             >  2:1141595/1‑140 (MQ=255)
           aaGCGTCGCCGTGGCCGATGCGCATCCACTGTTGATCCCGCGCGCCGATTACGTGACGCGCATTGCTGGCGGTCGTGGCGCAGTGCGCGAAGTTTGCGACTTATTACTCCTGGCGCAGGGCAAGCTGGATGAAGCCAAAg                                                                                                                        <  2:708869/140‑1 (MQ=255)
             gCGTCGCCGTGGCCGATGCGCATCCACTGTTGATCCCGCGCGCCGATTACGTGACGCGCATTGCTGGCGGTCGTGGCGCAGTGCGCGAAGTTTGCGACTTATTACTCCTGGCGCAGGGCAAGCTGGATGAAGCCAAAggg                                                                                                                      <  2:154975/140‑1 (MQ=255)
              cGTCGCCGTGGCCGATGCGCATCCACTGTTGATCCCGCGCGCCGATTACGTGACGCGCATTGCTGGCGGTCGTGGCGCAGTGCGCGAAGTTTGCGACTTATTACTCCTGGCGCAGGGCAAGCTGGATGAAGCCAAAGGGc                                                                                                                     >  1:437097/1‑140 (MQ=255)
               gTCGCCGTGGCCGATGCGCATCCACTGTTGATCCCGCGCGCCGATTACGTGACGCGCATTGCTGGCGGTCGTGGCGCAGTGCGCGAAGTTTGCGACTTATTACTCCTGGCGCAGGGCAAGCTGGATGAAGCCAAAGGGCa                                                                                                                    <  2:371476/140‑1 (MQ=255)
               gTCGCCGTGGCCGATGCGCATCCACTGTTGATCCCGCGCGCCGATTACGTGACGCGCATTGCTGGCGGTCGTGGCGCAGTGCGCGAAGTTTGCGACTTATTACTCCTGGCGCAGGGCAAGCTGGATGAAGCCAAAGGGCa                                                                                                                    <  2:349365/140‑1 (MQ=255)
                tCGCCGTGGCCGATGCGCATCCACTGTTGATCCCGCGCGCCGATTACGTGACGCGCATTGCTGGCGGTCGTGGCGCAGTGCTCGAAGTTTGCGACTTATTACTCCTGGCGCAGGGCAAGCTGGATg                                                                                                                                 >  2:1007136/1‑126 (MQ=255)
                tCGCCGTGGCCGATGCGCATCCACTGTTGATCCCGCGCGCCGATTACGTGACGCGCATTGCTGGCGGTCGTGGCGCAGTGCGCGAAGTTTGCGACTTATTACTCCTGGCGCAGGGCAAGCTGGATg                                                                                                                                 <  1:1007136/126‑1 (MQ=255)
                tCGCCGTGGCCGATGCGCATCCACTGTTGATCCCGCGCGCCGATTACGTGACGCGCATTGCTGGCGGTCGTGGCGCAGTGCGCGAAGTTTGCGACTTATTACTCCTGGCGCAGGGCAAGCTGGATGAAGCCAAAGGGCaa                                                                                                                   <  2:963289/140‑1 (MQ=255)
                 cGCCGTGGCCGATGCGCATCCACTGTTGATCCCGCGCGCCGATTACGTGACGCGCATTGCTGGCGGTCGTGGCGCAGTGCGCGAAGTTTGCGACTTATTACTCCTGGCGCAGGGCAAGCTGGATGAAGCCAAAGGGCAAt                                                                                                                  >  2:618729/1‑140 (MQ=255)
                  gCCGTGGCCGATGCGCATCCACTGTTGATCCCGCGCGCCGATTACGTGACGCGCATTGCTGGCGGTCGTGGCGCAGTGCGCGAAGTTTGCGACTTATTACTCCTGGCGCAGGGCAAGCTGGATGAAGCCAAAGGGCAATc                                                                                                                 >  1:641535/1‑140 (MQ=255)
                    cGTGGCCGATGCGCATCCACTGTTGATCCCGCGCGCCGATTACGTGACGCGCATTGCTGGCGGTCGTGGCGCAGTGCGCGAAGTTTGCGACTTATTACTCCTGGCGCAGGGCAAGCTGGATGAAGCCAAAGGGCAATCGa                                                                                                               <  2:478705/140‑1 (MQ=255)
                      tGGCCGATGCGCATCCACTGTTGATCCCGCGCGCCGATTACGTGACGCGCATTGCTGGCGGTCGTGGCGCAGTGCGCGAAGTTTGCGACTTATTACTCCTGGCGCAGGGCAAGCTGGATGAAGCCAAAGGGCAATCGata                                                                                                             <  2:641535/140‑1 (MQ=255)
                      tGGCCGATGCGCATCCACTGTTGATCCCGCGCGCCGATTACGTGACGCGCATTGCTGGCGGTCGTGGCGCAGTGCGCGAAGTTTGCGACTTATTACTCCAGGCGCAGGGCAAGCTGGATGAAGCCAAAGGGCAATCGata                                                                                                             <  1:476868/140‑1 (MQ=255)
                        gCCGATGCGCATCCACTGTTGATCCCGCGCGCCGATTACGTGACGCGCATTGCTGGCGGTCGTGGCGCAGTGCGCGAAGTTTGCGACTTATTACTCCTGGCGCAGGGCAAGCTGGATGAAGCCAAAGGGCAATCGATATg                                                                                                           <  2:797408/140‑1 (MQ=255)
                            aTGCGCATCCACTGTTGATCCCGCGCGCCGATTACGTGACGCGCATTGCTGGCGGTCGTGGCGCAGTGCGCGAAGTTTGCGACTTATTACTCCTGGCGCAGGGCAATCTGGATGAAGCCAAAGGGCAATCGATATGAGTa                                                                                                       <  1:1141595/140‑1 (MQ=255)
                                  aTCCACTGTTGATCCCGCGCGCCGATTACGTGACGCGCATTGCTGGCGGTCGTGGCGCAGTGCGCGAAGTTTGCGACTTATTACTCCTGGCGCAGGGCAAGCTGGATGAAGCCAAAGGGCAATCGATATGAGTAAAGCCa                                                                                                 >  1:487403/1‑140 (MQ=255)
                                  aTCCACTGTTGATCCCGCGCGCCGATTACGTGACGCGCATTGCTGGCGGTCGTGGCGCAGTGCGCGAAGTTTGCGACTTATTACTCCTGGCGCAGGGCAAGCTGGATGAAGCCAAAGGGCAATCGATATGAGTAAAGCCa                                                                                                 <  2:437097/140‑1 (MQ=255)
                                     cACTGTTGATCCCGCGCGCCGATTACGTGACGCGCATTGCTGGCGGTCGTGGCGCAGTGCGCGAAGTTTGCGACTTATTACTCCTGGCGCAGGGCAAGCTGGATGAAGCCAAAGGGCAATCGATATGAGTAAAGCCAGAc                                                                                              <  1:810388/140‑1 (MQ=255)
                                      aCTGTTGATCCCGCGCTCCGATTACGTGACGCGCATTGCTGGCGGTCGTGGCGCAGTGCGCGAAGTTTGCGACTTATTACTCCTGGCGCAGGGCAAGCTGGATGAAGCCAAAGGGCAATCGATATGAGTAAAGCCAGACg                                                                                             <  2:1030481/140‑1 (MQ=255)
                                      aCTGTTGATCCCGCGCGCCGATTACGTGACGCGCATTGCTGGCGGTCGTGGCGCAGTGCGCGAAGTTTGCGACTTATTACTCCTGGCGCAGGGCAAGCTGGATGAAGCCAAAGGGCAATCGATATGAGTAAAGCCAGACg                                                                                             <  2:1114967/140‑1 (MQ=255)
                                      aCTGTTGATCCCGCGCGCCGATTACGTGACGCGCATTGCTGGCGGTCGTGGCGCAGTGCGCGAAGTTTGCGACTTATTACTCCTGGCGCAGGGCAAGCTGGATGAAGCCAAAGGGCAATCGATATGAGTAAAGCCAGACg                                                                                             <  1:80185/140‑1 (MQ=255)
                                       cTGTTGATCCCGCGCGCCGATTACGTGACGCGCATTGCTGGCGGTCGTGGCGCAGTGCGCGAAGTTTGCGACTTATTACTCCTGGCGCAGGGCAAGCTGGATGAAGCCAAAGGGCAATCGATATGAGTAAAGCCAGACGt                                                                                            <  2:487403/140‑1 (MQ=255)
                                          ttGATCCCGCGCGCCGATTACGTGACGCGCATTGCTGGCGGTCGTGGCGCAGTGCGCGAAGTTTGCGACTTATTACTCCTGGCGCAGGGCAAGCTGGATGAAGCCAAAGGGCAATCGATATGAGTAAAGCCAGACGTTgg                                                                                         >  1:44762/1‑140 (MQ=255)
                                          ttGATCCCGCGCGCCGATTACGTGACGCGCATTGCTGGCGGTCGTGGCGCAGTGCGCGAAGATTGCGACTTATTACTCCTGGCGCAGGGCAAGCTGGATGAAGCCAAAGGGCAATCGATATGAGTAAAGCCAGACGTTgg                                                                                         >  2:1026220/1‑140 (MQ=255)
                                            gATCCCGCGCGCCGATTACGTGACGCGCATTGCTGGCGGTCGTGGCGCAGTGCGCGAAGTTTGCGACTTATTACTCCTGGCGCAGGGCAAGCTGGATGAAGCCAAAGGGCAATCGATATGAGTAAAGCCAGACg                                                                                             <  2:693298/134‑1 (MQ=255)
                                            gATCCCGCGCGCCGATTACGTGACGCGCATTGCTGGCGGTCGTGGCGCAGTGCGCGAAGTTTGCGACTTATTACTCCTGGCGCAGGGCAAGCTGGATGAAGCCAAAGGGCAATCGATATGAGTAAAGCCAGACg                                                                                             >  1:693298/1‑134 (MQ=255)
                                            gATCCCGCGCGCCGATTACGTGACGCGCATTGCTGGCGGTCGTGGCGCAGTGCGCGAAGTTTGCGACTTATTACTCCTGGCGCAGGGCAAGCTGGATGAAGCCAAAGGGCAATCGATATGAGTAAAGCCAGACGTTGGGt                                                                                       <  2:708966/140‑1 (MQ=255)
                                              tCCCGCGCGCCGATTACGTGACGCGCATTGCTGGCGGTCGTGGCGCAGTGCGCGAAGTTTGCGACTTATTACTCCTGGCGCAGGGCAAGCTGGATGAAGCCAAAGGGCAATCGATATGAGTAAAGCCAGACGt                                                                                            <  2:907666/133‑1 (MQ=255)
                                              tCCCGCGCGCCGATTACGTGACGCGCATTGCTGGCGGTCGTGGCGCAGTGCGCGAAGTTTGCGACTTATTACTCCTGGCGCAGGGCAAGCTGGATGAAGCCAAAGGGCAATCGATATGAGTAAAGCCAGACGt                                                                                            >  1:907666/1‑133 (MQ=255)
                                              tCCCGCGCGCCGATTACGTGACGCGCATTGCTGGCGGTCGTGGCGCAGTGCGCGAAGTTTGCGACTTATTACTCCTGGCGCAGGGCAAGCTGGATGAAGCCAAAGGGCAATCGATATGAGTAAAGCCAGACGTTGGGTTa                                                                                     >  1:795531/1‑140 (MQ=255)
                                              tCCCGCGCGCCGATTACGTGACGCGCATTGCTGGCGGTCGTGGCGCAGTGCGCGAAGTTTGCGACTTATTACTCCTGGCGCAGGGCAAGCTGGATGAAGCCAAAGGGCAATCGATATGAGTAAAGCCAGACGTTGGGTTa                                                                                     >  2:893639/1‑140 (MQ=255)
                                                 cgcgcgCCGATTACGTGACGCGCATTGCTGGCGGTCGTGGCGCAGTGCGCGAAGTTTGCGACTTATTACTCCTGGCGCAGGGCAAGCTGGATGAAGCCAAAGGGCAATCGATATGAGTAAAGCCAGACGTTGGGTTATCa                                                                                  <  1:558447/140‑1 (MQ=255)
                                                 cgcgcgCCGATTACGTGACGCGCATTGCTGGCGGTCGTGGCGCAGTGCGCGAAGTTTGCGACTTATTACTCCTGGCGCAGGGCAAGCTGGATGAAGCCAAAGGGCAATCGATATGAGTAAAGCCAGACGTTGGGTTATCa                                                                                  <  1:30317/140‑1 (MQ=255)
                                                 cgcgcgCCGATTACGTGACGCGCATTGCTGGCGGTCGTGGCGCAGTGCGCGAAGTTTGCGACTTATTACTCCTGGCGCAGGGCAAGCTGGATGAAGCCAAAGGGCAATCGATATGAGTAAAGCCAGACGTTGGGTTATCa                                                                                  <  2:795531/140‑1 (MQ=255)
                                                    gcgcCGATTACGTGACGCGCATTGCTGGCGGTCGTGGCGCAGTGCGCGAAGTTTGCGACTTATTACTCCTGGCGCAGGGCAAGCTGGATGAAGCCAAAGGGCAATCGATATGAGTAAAGCCAGACGTTGGGTTATCATtg                                                                               >  1:392291/1‑140 (MQ=255)
                                                    gcgcCGATTACGTGACGCGCATTGCTGGCGGTCGTGGCGCAGTGCGCGAAGTTTGCGACTTATTACTCCTGGCGCAGGGCAAGCTGGATGAAGCCAAAGGGCAATCGATATGAGTAAAGCCAGACGTTGGGTTATCATtg                                                                               >  1:1129515/1‑140 (MQ=255)
                                                    gcgcCGATTACGTGACGCGCATTGCTGGCGGTCGTGGCGCAGTGCGCGAAGTTTGCGACTTATTACTCCTGGCGCAGGGCAAGCTGGATGAAGCCAAAGGGCAATCGATATGAGTAAAGCCAGACGTTGGGTTATCATtg                                                                               >  1:653398/1‑140 (MQ=255)
                                                    gcgcCGATTACGTGACGCGCATTGCTGGCGGTCGTGGCGCAGTGCGCGAAGGTTGCGACTTATTACTCCTGGCGCAGGGCAAGCTGGATGAAGCCAAAGGGCAATCGATATGAGTAAAGCCAGACGTTGGGTTATCATtg                                                                               >  2:680636/1‑140 (MQ=255)
                                                           ttACGTGACGCGCATTGCTGGCGGTCGTGGCGCAGTGCGCGAAGTTTGCGACTTATTACTCCTGGCGCAGGGCAAGCTGGATGAAGCCAAAGGGCAATCGATATGAGTAAAGCCAGACGTTGGGTTATCATTGTGCTATc                                                                        <  1:122761/140‑1 (MQ=255)
                                                                 gACGCGCATTGCTGGCGGTCGTGGCGCAGTGCGCGAAGTTTGCGACTTATTACTCCTGGCGCAGGGCAAGCTGGATGAAGCTAAAGGGCAATCGATATGAGTAAAGCCAGACGTTGGGTTATCATTGTGCTATCACTGGc                                                                  <  2:396890/140‑1 (MQ=255)
                                                                 gACGCGCATTGCTGGCGGTCGTGGCGCAGTGCGCGAAGTTTGCGACTTATTACTCCTGGCGCAGGGCAAGCTGGATGAAGCCAAAGGGCAATCGATATGAGTAAAGCCAGACGTTGGGTTATCATTGTGCTATCACTGGc                                                                  <  1:473805/140‑1 (MQ=255)
                                                                  aCGCGCATTGCTGGCGGTCGTGGCGCAGTGCGCGAAGTTTGCGACTTATTACTCCTGGCGCAGGGCAAGCTGGATGAAGCCAAAGGGCAATCGATATGAGTAAAGCCAGACGTTGGGTTATCATTGTGCTATCACTGGCg                                                                 >  2:682665/1‑140 (MQ=255)
                                                                   cgcgCATTGCTGGCGGTCGTGGCGCAGTGCGCGAAGTTTGCGACTTATTACTCCTGGCGCAGGGCAAGCTGGATGAAGCCAAAGGGCAATCGATATGAGTAAAGCCAGACGTTGGGTTATCATTGTGCTATCACTGGCgg                                                                <  1:59735/140‑1 (MQ=255)
                                                                    gcgcATTGCTGGCGGTCGTGGCGCAGTGCGCGAAGTTTGCGACTTATTACTCCTGGCGCAGGGCAAGCTGGATGAAGCCAAAGGGCAATCGATATGAGTAAAGCCAGACGTTGGGTTATCATTGTGCTATCACTGGCGGt                                                               <  2:1129515/140‑1 (MQ=255)
                                                                     cgcATTGCTGGCGGTCGTGGCGCAGTGCGCGAAGTTTGCGACTTATTACTCCTGGCGCAGGGCAAGCTGGATGAAGCCAAAGGGCAATCGATATGAGTAAAGCCAGACGTTGGGTTATCATTGTGCTATCACTgg                                                                   >  1:1099391/1‑135 (MQ=255)
                                                                     cgcATTGCTGGCGGTCGTGGCGCAGTGCGCGAAGTTTGCGACTTATTACTCCTGGCGCAGGGCAAGCTGGATGAAGCCAAAGGGCAATCGATATGAGTAAAGCCAGACGTTGGGTTATCATTGTGCTATCACTgg                                                                   <  2:1099391/135‑1 (MQ=255)
                                                                      gcATTGCTGGCGGTCGTGGCGCAGTGCGCGAAGTTTGCGACTTATTACTCCTGGCGCAGGGCAAGCTGGATGAAGCCAAAGGGCAATCGATATGAGTAAAGCCAGACGTTGGGTTATCATTGTGCTATCACTGGCGGTTc                                                             <  2:1109485/140‑1 (MQ=255)
                                                                       cATTGCTGGCGGTCGTGGCGCAGTGCGCGAAGTTTGCGACTTATTACTCCTGGCGCAGGGCAAGCTGGATGAAGCCAAAGGGCAATCGATATGAGTAAAGCCAGACGTTGGGTTATCATTGTGCTATCACTGGCGGTTCt                                                            >  1:113211/1‑140 (MQ=255)
                                                                                cGGTCGTGGCGCAGTGCGCGAAGTTTGCGACTTATTACTCCTGGCGCAGGGCAAGCTGGATGAAGCCAAAGGGCAATCGATATGAGTAAAGCCAGACGTTGGGTTATCATTGTGCTATCACTGGCGGTTCTGGTgatgat                                                   <  1:893639/140‑1 (MQ=255)
                                                                                cGGTCGTGGCGCAGTGCGCGAAGTTTGCGACTTATTACTCCTGGCGCAGGGCAAGCTGGATGAAGCCAAAGGGCAATCGATATGAGTAAAGCCAGACGTTGGGTTATCATTGTGCTATCACTGGCGGTTCTGGTgatgat                                                   <  1:204980/140‑1 (MQ=255)
                                                                                cGGTCGTGGCGCAGTGCGCGAAGTTTGCGACTTATTACTCCTGGCGCAGGGCAAGCTGGATGAAGCCAAAGGGCAATCGATATGAGTAAAGCCAGACGTTGGGTTATCATTGTGCTATCACTGGCGGTTCTGGTgatgat                                                   <  1:50629/140‑1 (MQ=255)
                                                                                cGGTCGTGGCGCAGTGCGCGAAGTTTGCGACTTATTACTCCTGGCGCAGGGCAAGCTGGATGAAGCCAAAGGGCAATCGATATGAGTAAAGCCAGACGTTGGGTTATCATTGTGCTATCACTGGCGGTTCTGGTgatgat                                                   <  1:618729/140‑1 (MQ=255)
                                                                                cGGTCGTGGCGCAGTGCGCGAAGTTTGCGACTTATTACTCCTGGCGCAGGGCAAGCTGGATGAAGCCAAAGGGCAATCGATATGAGCAAAGCCAGACGTTGGGTTATCATTGTGCTATCACTGGCGGTTCTGGTgatgat                                                   <  1:623247/140‑1 (MQ=255)
                                                                                 ggTCGTGGCGCAGTGCGCGAAGTTTGCGACTTATTACTCCTGGCGCAGGGCAAGCTGGATGAAGCCAAAGGGCAATCGATATGAGTAAAGCCAGACGTTGGGTTATCATTGTGCTATCACTGGCGGTTCTGGTGATGATc                                                  <  2:44762/140‑1 (MQ=255)
                                                                                 ggTCGTGGCGCAGTGCGCGAAGTTTGCGACTTATTACTCCCGGCGCAGGGCAAGCTGGGTGAAGCCAAAAGGCAATCGATATGAGTAAAGCCAGACGGTGGGTTATCATTGTGCTATCACTGGCGGCGCTGGtggatgtt                                                  >  2:667518/1‑134 (MQ=255)
                                                                                    cGTGGCGCAGTGCGCGAAGTTTGCGACTTATTACTCCTGGCGCAGGGCAAGCTGGATGAAGCCAAAGGGCAATCGATATGAGTAAAGCCAGACGTTGGGTTATCATTGTGCTATCACTGGCGGTTCTGGTGATGATCGGc                                               <  2:392291/140‑1 (MQ=255)
                                                                                    cGTGGCGCAGTGCGCGAAGTTTGCGACTTATTACTCCTGGCGCAGGGCAAGCTGGATGAAGCCAAAGGGCAATCGATATGAGTAAAGCCAGACGTTGGGTTATCATTGTGCTATCACTGGCGGTTCTGGTGATGATCGGc                                               <  2:154323/140‑1 (MQ=255)
                                                                                      tGGCGCAGTGCGCGAAGTTTGCGACTTATTACTCCTGGCGCAGGGCAAGCTGGATGAAGCCAAAGGGCAATCGATATGAGTAAAGCCAGACGTTGGGTTATCATTGTGCTATCACTGGCGGTTc                                                             <  2:45028/124‑1 (MQ=255)
                                                                                      tGGCGCAGTGCGCGAAGTTTGCGACTTATTACTCCTGGCGCAGGGCAAGCTGGATGAAGCCAAAGGGCAATCGATATGAGTAAAGCCAGACGTTGGGTTATCATTGTGCTATCACTGGCGGTTc                                                             >  1:45028/1‑124 (MQ=255)
                                                                                      tGGCGCAGTGCGCGAAGTTTGCGACTTATTACTCCTGGCGCAGGGCAAGCTGGATGAAGCCAAAGGGCAATCGATATGAGTAAAGCCAGACGTTGGGTTATCATTGTGCTATCACTGGCGGGTCTTGGGGTGATCGGGAt                                             >  1:782747/1‑140 (MQ=255)
                                                                                             gTGCGCGAAGTTTGCGACTTATTACTCCTGGCGCAGGGCAAGCTGGATGAAGCCAAAGGGCAATCGATATGAGTAAAGCCAGACGTTGGGTTATCATTGTGCTATCACTGGCGGTTCTGGTGATGATCGGCATTAatatt                                      >  2:1038008/1‑139 (MQ=255)
                                                                                                          gCGACTTATTACTCCTGGCGCAGGGCAAGCTGGATGAAGCCAAAGGGCAATCGATATGAGTAAAGCCAGACGTTGGGTTATCATTGTGCTATCACTGGCGGTTCTGGTGATGATCGGCATTAATATGGCCGAAAAAGACg                         >  2:621937/1‑140 (MQ=255)
                                                                                                           cGACTTATTACTCCTGGCGCAGGGCAAGCTGGATGAAGCCAAAGGGCAATCGATATGAGTAAAGCCAGACGTTGGGTTATCATTGTGCTATCACTGGCGGTTCTGGTGATGATCGGCATTAATATGGCCGAAAAAGACGa                        <  2:653398/140‑1 (MQ=255)
                                                                                                           cGACTTATTACTCCTGGCGCAGGGCAAGCTGGATGAAGCCAAAGGGCAATCGATATGAGTAAAGCCAGACGTTGGGTTATCATTGTGCTATCACTGGCGGTTCTGGTGATGATCGGCATTAATATGGCCGAAAAAGACGa                        <  1:521095/140‑1 (MQ=255)
                                                                                                                           gcgcAGGGCAAGCTGGATGAAGCCAAAGGGCAATCGATATGAGTAAAGCCAGACGTTGGGTTATCATTGTGCTATCACTGGCGGTTCTGGTGATGATCGGCATTAATATGGCCGAAAAAGACGATACCGCCCAGGTGgtc        <  1:682665/140‑1 (MQ=255)
                                                                                                                                 ggCAAGCTGGATGAAGCCAAAGGGCAATCGATATGAGTAAAGCCAGACGTTGGGTTATCATTGTGCTATCACTGGCGGTTCTGGTGATGATCGGCATTAATATGGCCGAAAAAGACGATACCGCCCAGGTGGTCGTcaac  <  1:974871/140‑1 (MQ=255)
                                                                                                                                 ggCAAGCTGGATGAAGCCAAAGGGCAATCGATATGAGTAAAGCCAGACGTTGGGTTATCATTGTGCTATCACTGGCGGTTCTGGTGATGATCGGCATTAATATGGCCGAAAAAGACGATACCGCCCAGGTGGTCGTcaac  <  1:254682/140‑1 (MQ=255)
                                                                                                                                      |                                                                                                                                      
AAAGTGGGTTTAAGCGTCGCCGTGGCCGATGCGCATCCACTGTTGATCCCGCGCGCCGATTACGTGACGCGCATTGCTGGCGGTCGTGGCGCAGTGCGCGAAGTTTGCGACTTATTACTCCTGGCGCAGGGCAAACTGGATGAAGCCAAAGGGCAATCGATATGAGTAAAGCCAGACGTTGGGTTATCATTGTGCTATCACTGGCGGTTCTGGTGATGATCGGCATTAATATGGCCGAAAAAGACGATACCGCCCAGGTGGTCGTCAAC  >  NC_000913/3342675‑3342943

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A