Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F28 I1 R1 172 67.8 2301510 98.9% 2276193 138.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,920,011 T→C K131K (AAA→AAG)  atpH ← ATP synthase F1 complex subunit delta

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,920,0110TC100.0% 270.7 / NA 78K131K (AAA→AAG) atpHATP synthase F1 complex subunit delta
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (43/35);  total (43/35)

CAAGACGTCTGCAAGGCGCTCAAGACGACCGCGTACGCTGCCATCAATGACCATATCACCCGCTCGGATGATAACGCCTGCCATTACAGACTTATCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGTTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCACTCAGTGCGGCAGCGGAAATGACGTCTACCTCAGCGGTAGCCTCACTCACGGCACGCAGGTGAATAAACTGCTCCAGAACATCCGGGAGCGCGTTAA  >  NC_000913/3919879‑3920147
                                                                                                                                    |                                                                                                                                        
cAAGACGTCTGCAAGGCGCTCAAGACGACCGCGTACGCTGCCATCAATGACCATATCACCCGCTCGGATGATAACGCCTGCCATTACAGACTTATCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGCTTTTCCa                                                                                                                                   >  2:139447/1‑140 (MQ=255)
cAAGACGTCTGCAAGGCGCTCAAGACGACCGCGTACGCTGCCATCAATGACCATATCACCCGCTCGGATGATAACGCCTGCCATTACAGACTTATCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGCTTTTCCa                                                                                                                                   >  2:150674/1‑140 (MQ=255)
cAAGACGTCTGCAAGGCGCTCAAGACGACCGCGTACGCTGCCATCAATGACCATATCACCCGCTCGGATGATAACGCCTGCCATTACAGACTTATCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGCTTTTCCa                                                                                                                                   >  1:564115/1‑140 (MQ=255)
cAAGACGTCTGCAAGGCGCTCAAGACGACCGCGTACGCTGCCATCAATGACCATATCACCCGCTCGGATGATAACGCCTGCCATTACAGACTTATCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGCTTTTCCa                                                                                                                                   >  1:373219/1‑140 (MQ=255)
 aaGACGTCTGCAAGGCGCTCAAGACGACCGCGTACGCTGCCATCAATGACCATATCACCCGCTCGGATGATAACGCCTGCCATTACAGACTTATCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGCTTTTCCAt                                                                                                                                  <  1:422218/140‑1 (MQ=255)
          gCAAGGCGCTCAAGACGACCGCGTACGCTGCCATCAATGACCATATCACCCGCTCGGATGATAACGCCTGCCATTACAGACTTATCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGCTTTTCCATCGCAGCAGa                                                                                                                         >  2:560861/1‑140 (MQ=255)
               gcgcTCAAGACGACCGCGTACGCTGCCATCAATGACCATATCACCCGCTCGGATGATAACGCCTGCCATTACAGACTTATCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGCTTTTCCATCGCAGCAGAAAttt                                                                                                                    >  1:116420/1‑140 (MQ=255)
                cgcTCAAGACGACCGCGTACGCTGCCATCAATGACCATATCACCCGCTCGGATGATAACGCCTGCCATTACAGACTTATCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGCTTTTCCATCGCAGCAGAAAtttt                                                                                                                   >  1:627194/1‑140 (MQ=255)
                  cTCAAGACGACCGCGTACGCTGCCATCAATGACCATATCACCCGCTCGGATGATAACGCCTGCCATTACAGACTTATCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTcg                                                                                                                 >  1:305486/1‑140 (MQ=255)
                    cAAGACGACCGCGTACGCTGCCATCAATGACCATATCACCCGCTCGGATGATAACGCCTGCCATTACAGACTTATCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTcgcg                                                                                                               <  1:560861/140‑1 (MQ=255)
                     aaGACGACCGCGTACGCTGCCATCAATGACCATATCACCCGCTCGGATGATAACGCCTGCCATTACAGACTTATCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGa                                                                                                              >  2:762275/1‑140 (MQ=255)
                        acgacCGCGTACGCTGCCATCAATGACCATATCACCCGCTCGGATGATAACGCCTGCCATTACAGACTTATCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCt                                                                                                           <  2:373219/140‑1 (MQ=255)
                        acgacCGCGTACGCTGCCATCAATGACCATATCACCCGCTCGGATGATAACGCCTGCCATTACAGACTTATCGATTCTGCAATTCAGCTTAACTTTGCGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCt                                                                                                           <  1:33280/140‑1 (MQ=255)
                          gacCGCGTACGCTGCCATCAATGACCATATCACCCGCTCGGATGATAACGCCTGCCATTACAGACTTATCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCt                                                                                                           <  2:501170/138‑1 (MQ=255)
                          gacCGCGTACGCTGCCATCAATGACCATATCACCCGCTCGGATGATAACGCCTGCCATTACAGACTTATCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCt                                                                                                           >  1:501170/1‑138 (MQ=255)
                               cgTACGCTGCCATCAATGACCATATCACCCGCTCGGATGATAACGCCTGCCATTACAGACTTATCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTc                                                                                                    >  2:952916/1‑140 (MQ=255)
                                gTACGCTGCCATCAATGACCATATCACCCGCTCGGATGATAACGCCTGCCATTACAGACTTATCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCa                                                                                                   <  2:214060/140‑1 (MQ=255)
                                 tACGCTGCCATCAATGACCATATCACCCGCTCGGATGATAACGCCTGCCATTACAGACTTATCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCAc                                                                                                  >  1:1030299/1‑140 (MQ=255)
                                      tGCCATCAATGACCATATCACCCGCTCGGATGATAACGCCTGCCATTACAGACTTATCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCACTCAGt                                                                                             >  1:1019926/1‑140 (MQ=255)
                                      tGCCATCAATGACCATATCACCCGCTCGGATGATAACGCCTGCCATTACAGACTTATCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCACTCAGt                                                                                             >  1:1050127/1‑140 (MQ=255)
                                        ccATCAATGACCATATCACCCGCTCGGATGATAACGCCTGCCATTACAGACTTATCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCACTCAGTGc                                                                                           >  2:672805/1‑140 (MQ=255)
                                           tCAATGACCATATCACCCGCTCGGATGATAACGCCTGCCATTACAGACTTATCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCACTCAGTGCGGc                                                                                        >  1:128229/1‑140 (MQ=255)
                                                gACCATATCACCCGCTCGGATGATAACGCCTGCCATTACAGACTTATCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCACTCAGTGCGGCAGCgg                                                                                   >  2:383511/1‑140 (MQ=255)
                                                  ccATATCACCCGCTCGGATGATAACGCCTGCCATTACAGACTTATCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCACTCAGTg                                                                                            <  2:85699/129‑1 (MQ=255)
                                                  ccATATCACCCGCTCGGATGATAACGCCTGCCATTACAGACTTATCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCACTCAGTg                                                                                            >  1:85699/1‑129 (MQ=255)
                                                  ccATATCACCCGCTCGGATGATAACGCCTGCCATTACAGACTTATCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCACTCAGTGCGGc                                                                                        <  2:58947/133‑1 (MQ=255)
                                                  ccATATCACCCGCTCGGATGATAACGCCTGCCATTACAGACTTATCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCACTCAGTGCGGc                                                                                        >  1:58947/1‑133 (MQ=255)
                                                  ccATATCACCCGCTCGGATGATAACGCCTGCCATTACAGACTTATCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCACTCAGTGCGGCAGCGGaa                                                                                 >  2:954216/1‑140 (MQ=255)
                                                     tatCACCCGCTCGGATGATAACGCCTGCCATTACAGACTTATCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCACTCAGTGCGGCAGCGGAAATg                                                                              <  2:116420/140‑1 (MQ=255)
                                                     tatCACCCGCTCGGATGATAACGCCTGCCATTACAGACTTATCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCACTCAGTGCGGCAGCGGAAATg                                                                              <  2:1019926/140‑1 (MQ=255)
                                                           ccGCTCGGATGATAACGCCTGCCATTACAGACTTATCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCACTCAGTGCGGCAGCGGAAATGACGTCt                                                                        >  1:692306/1‑140 (MQ=255)
                                                               tCGGATGATAACGCCTGCCATTACAGACTTATCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCACTCAGTGCGGCAGCGGAAATGACGTCTACCt                                                                    <  2:305486/140‑1 (MQ=255)
                                                                cGGATGATAACGCCTGTCATTACAGACTTATCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCACTCAGTGCGGCAGCGGAAATGACGTCTACCTc                                                                   >  2:522033/1‑140 (MQ=255)
                                                                  gatgatAACGCCTGCCATTACAGACTTATCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCACTCAGTGCGGCAGCGGAAATGACGTCTACCt                                                                    <  2:960206/137‑1 (MQ=255)
                                                                  gatgatAACGCCTGCCATTACAGACTTATCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCACTCAGTGCGGCAGCGGAAATGACGTCTACCt                                                                    >  1:960206/1‑137 (MQ=255)
                                                                     gatAACGCCTGCCATTACAGACTTATCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCACTCAGTGCGGCAGCGGAAATGACGTCTACCTCAGCgg                                                              <  2:289870/140‑1 (MQ=255)
                                                                        aaCGCCTGCCATTACAGACTTATCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCACTCAGTGCGGCAGCGGAAATGACGTCTACCTCAGCGGTAg                                                           >  2:489920/1‑140 (MQ=255)
                                                                         aCGCCTGCCATTACAGACTTATCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCACTCAGTGCGGCAGCGGAAATGACGTCTACCTCAGCGGTAGc                                                          >  2:597819/1‑140 (MQ=255)
                                                                           gCCTGCCATTACAGACTTATCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCACTCAGTGCGGCAGCGGAAATGACGTCTACCTCAGCGGTAGCct                                                        >  1:15230/1‑140 (MQ=255)
                                                                             cTGCCATTACAGACTTATCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCACTCAGTGCGGCAGCGGAAATGACGTCTACCTCAGCGGTAGc                                                          <  2:975599/136‑1 (MQ=255)
                                                                             cTGCCATTACAGACTTATCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCACTCAGTGCGGCAGCGGAAATGACGTCTACCTCAGCGGTAGc                                                          >  1:975599/1‑136 (MQ=255)
                                                                             cTGCCATTACAGACTTATCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCCGTTGTTCACTCAGTGCGGCAGCGGAAATGACGTCTACCTCAGCGGTAGCctca                                                      >  1:491691/1‑140 (MQ=255)
                                                                              tGCCATTACAGACTTATCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCACTCAGTGCGGCAGCGGAAATGACGTCTACCTCAGCGGTAGCctcac                                                     >  2:20746/1‑140 (MQ=255)
                                                                               gCCATTACAGACTTATCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCACTCAGTGCGGCAGCGGAAATGACGTCTACCTCAGCGGTAGCctcact                                                    >  1:733528/1‑140 (MQ=255)
                                                                                 cATTACAGACTTATCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCACTCAGTGCGGCAGTGGAAATGACGTCTACCTCAGCGGTAGCctcactca                                                  >  2:453603/1‑140 (MQ=255)
                                                                                  aTTACAGACTTATCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCACTCAGTGCGGCAGCGGAAATGACGTCTACCTCAGCGGTAGCCtcactcac                                                 >  1:242538/1‑140 (MQ=255)
                                                                                      cAGACTTATCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCACTCAGTGCGGCAGCGGAAATGACGTCTACCTCAGCGGTAGCCTCACTCACGGCa                                             <  1:139447/140‑1 (MQ=255)
                                                                                        gACTTATCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCACTCAGTGCGGCAGCGGAAATGACGTCTACCTCAGCGGTAGCCTCACTCACGGCACg                                           <  2:1030299/140‑1 (MQ=255)
                                                                                        gACTTATCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCACTCAGTGCGGCAGCGGAAATGACGTCTACCTCAGCGGTAGCCTCACTCACGGCACg                                           <  2:879321/140‑1 (MQ=255)
                                                                                        gACTTATCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCACTCAGTGCGGCAGCGGAAATGACGTCTACCTCAGCGGTAGCCTCACTCACGGCACg                                           <  1:952916/140‑1 (MQ=255)
                                                                                        gACTTATCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCACTCAGTGCGGCAGCGGAAATGACGTCTACCTCAGCGGTAGCCTCACTCACGGCACg                                           <  2:1050127/140‑1 (MQ=255)
                                                                                         aCTTATCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCACTCAGTGCGGCAGCGGAAATGACGTCTACCTCAGCGGTAGCCTCACTCACGGCACGc                                          >  1:1128097/1‑140 (MQ=255)
                                                                                          cTTATCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCACTCAGTGCGGCAGCGGAAATGACGTCTACCTCAGCGGTAGCCTCACTCACGGCACGCa                                         <  1:876155/140‑1 (MQ=255)
                                                                                             aTCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCACTCAGTGCGGCAGCGGAAATGACGTCTACCTCAGCGGTAGCCTCACTCACGGCa                                             <  1:336874/133‑1 (MQ=255)
                                                                                             aTCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCACTCAGTGCGGCAGCGGAAATGACGTCTACCTCAGCGGTAGCCTCACTCACGGCa                                             >  2:336874/1‑133 (MQ=255)
                                                                                             aTCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCACTCAGTGCGGCAGCGGAAATGACGTCTACCTCAGCGGTAGCCTCACTCACGGCACGCa                                         >  2:206978/1‑137 (MQ=255)
                                                                                             aTCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCACTCAGTGCGGCAGCGGAAATGACGTCTACCTCAGCGGTAGCCTCACTCACGGCACGCa                                         <  1:206978/137‑1 (MQ=255)
                                                                                             aTCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCACTCAGTGCGGCAGCGGAAATGACGTCTACCTCAGCGGTAGCCTCACTCACGGCACGCAGGt                                      <  2:1128097/140‑1 (MQ=255)
                                                                                              tCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCACTCAGTGCGGCAGCGGAAATGACGTCTACCTCAGCGGTAGCCTCACTCACGGCACGCAGGt                                      <  1:424058/139‑1 (MQ=255)
                                                                                              tCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCACTCAGTGCGGCAGCGGAAATGACGTCTACCTCAGCGGTAGCCTCACTCACGGCACGCAGGt                                      >  2:424058/1‑139 (MQ=255)
                                                                                                     tGCAATTCAGCTTAACTTTGCGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCACTCAGTGCGGCAGCGGAAATGACGTCTACCTCAGCGGTAGCCTCACTCACGGCACGCAGGTGAATAAAc                              <  1:489920/140‑1 (MQ=255)
                                                                                                       cAATTCAGCTTAACTTTGCGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCACTCAGTGCGGCAGCGGAAATGACGTCTACCTCAGCGGTAGCCTCACTCACGGCACGCAGGTGAATAAACTg                            >  2:258066/1‑140 (MQ=255)
                                                                                                            cAGCTTAACTTTGCGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCACTCAGTGCGGCAGCGGAAATGACGTCTACCTCAGCGGTAGCCTCACTCACGGCACGCAGGTGAATAAACTGCTCCa                       >  1:1050118/1‑140 (MQ=255)
                                                                                                            cAGCTTAACTTTGCGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCACTCAGTGCGGCAGCGGAAATGACGTCTACCTCAGCGGTAGCCTCACTCACGGCACGCAGGTGAATAAACTGCTCCa                       >  1:610553/1‑140 (MQ=255)
                                                                                                            cAGCTTAACTTTGCGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCACTCAGTGCGGCAGCGGAAATGACGTCTACCTCAGCGGTAGCCTCACTCACGGCACGCAGGTGAATAAACTGCTCCa                       <  2:287998/140‑1 (MQ=255)
                                                                                                              gCTTAACTTTGCGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCACTCAGTGCGGCAGCGGAAATGACGTCTACCTCAGCGGTAGCCTCACTCACGGCACGCAGGTGAATAAACTGCTCCAGa                     <  1:245957/140‑1 (MQ=255)
                                                                                                               cTTAACTTTGCGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCACTCAGTGCGGCAGCGGAAATGACGTCTACCTCAGCGGTAGCCTCACTCACGGCACGCAGGTGAATAAACTGCTCCAGaa                    >  1:1131590/1‑140 (MQ=255)
                                                                                                                   aCTTTGCGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCACTCAGTGCGGCAGCGGAAATGACGTCTACCTCAGCGGTAGCCTCACTCACGGCACGCAGGTGAATAAACTGCTCCAGAACATc                <  1:20746/140‑1 (MQ=255)
                                                                                                                       tGCGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCACTCAGTGCGGCAGCGGAAATGACGTCTACCTCAGCGGTAGCCTCACTCACGGCACGCAGGTGAATAAACTGCTCCAGAACATCCggg            >  2:46837/1‑140 (MQ=255)
                                                                                                                       tGCGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCACTCAGTGCGGCAGCGGAAATGACGTCTACCTCAGCGGTAGCCTCACTCACGGCACGCAGGTGAATAAACTGCTCCAGAACATCCggg            <  2:1131590/140‑1 (MQ=255)
                                                                                                                        gCGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCACTCAGTGCGGCAGCGGAAATGACGTCTACCTCAGCGGTAGCCTCACTCACGGCACGCAGGTGAATAAACTGCTCCAGAACATCCGGGa           <  2:610553/140‑1 (MQ=255)
                                                                                                                        gCGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCACTCAGTGCGGCAGCGGAAATGACGTCTACCTCAGCGGTAGCCTCACTCACGGCACGCAGGTGAATAAACTGCTCCAGAACATCCGGGa           <  2:15230/140‑1 (MQ=255)
                                                                                                                        gCGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCACTCAGTGCGGCAGCGGAAATGACGTCTACCTCAGCGGTAGCCTCACTCACGGCACGCAGGTGAATAAACTGCTCCAGAACATCCGGGa           <  1:150674/140‑1 (MQ=255)
                                                                                                                        gCGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCACTCAGTGCGGCAGCGGAAATGACGTCTACCTCAGCGGTAGCCTCACTCACGGCACGCAGGTGAATAAACTGCTCCAGAACATCCGGGa           <  1:522033/140‑1 (MQ=255)
                                                                                                                         cGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCACTCAGTGCGGCAGCGGAAATGACGTCTACCTCAGCGGTAGCCTCACTCACGGCACGCAGGTGAATAAACTGCTCCAGAACATCCGGGa           <  2:121374/139‑1 (MQ=255)
                                                                                                                         cGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCACTCAGTGCGGCAGCGGAAATGACGTCTACCTCAGCGGTAGCCTCACTCACGGCACGCAGGTGAATAAACTGCTCCAGAACATCCGGGa           >  1:121374/1‑139 (MQ=255)
                                                                                                                         cGTGACAGACGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCACTCAGTGCGGCAGCGGAAATGACGTCTACCTCAGCGGTAGCCTCACTCACGGCACGCAGGTGAATAAACTGCTCCAGAACATCCGGGAg          >  2:66964/1‑140 (MQ=255)
                                                                                                                                 aCGCTTTTCCATCGCAGCAGAAATTTTCGCGAGCCGTTGTTCACTCAGTGCGGCAGCGGAAATGACGTCTACCTCAGCGGTAGCCTCACTCACGGCACGCAGGTGAATAAACTGCTCCAGAACATCCGGGAGCGCGTTaa  <  2:491691/140‑1 (MQ=255)
                                                                                                                                    |                                                                                                                                        
CAAGACGTCTGCAAGGCGCTCAAGACGACCGCGTACGCTGCCATCAATGACCATATCACCCGCTCGGATGATAACGCCTGCCATTACAGACTTATCGATTTTGCAATTCAGCTTAACTTTGCGTGACAGACGTTTTTCCATCGCAGCAGAAATTTTCGCGAGCTGTTGTTCACTCAGTGCGGCAGCGGAAATGACGTCTACCTCAGCGGTAGCCTCACTCACGGCACGCAGGTGAATAAACTGCTCCAGAACATCCGGGAGCGCGTTAA  >  NC_000913/3919879‑3920147

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A