Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F28 I1 R1 182 57.1 1926220 99.1% 1908884 138.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,745,554 T→C Y122C (TAC→TGC)  rimM ← ribosome maturation factor RimM

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,745,5540TC100.0% 266.1 / NA 74Y122C (TAC→TGC) rimMribosome maturation factor RimM
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (37/37);  total (37/37)

CGACTTTCTTGATAACCTGCCCATCGAGGAACGGTACGAGACGTTCCTTGATACCAAACGCATCTTTCAGGTTTGCCTTAATGACGAGAACGTCATTAGATCCGGTTTCCATCATATCGACGACTTTACCGAGATCGTAGCCTTCAGTGGTTACTACCTGGCAGCCCATCAGGTCTTTCCAGTAGTAGTCCCCCTCTTCAAGCTGAGGCAGCTGCGATGAATCCACGACAATTTCACAATTCGTCAGCAGGTTCGCCGCATCACGATCGTCAA  >  NC_000913/2745417‑2745689
                                                                                                                                         |                                                                                                                                       
cGACTTTCTTGATAACCTGCCCATCGAGGAACGGTACGAGACGTTCCTTGATACCAAACGCATCTTTCAGGTTTGCCTTAATGACGAGAACGTCATTAGATCCGGTTTCCATCATATCGACGACTTTACCGAGATCGCAg                                                                                                                                       >  1:166134/1‑140 (MQ=255)
  aCTTTCTTGATAACCTGCCCATCGAGGAACGGTACGAGACGTTCCTTGATACCAAACGCATCTTTCAGGTTTGCCTTAATGACGAGAACGTCATTAGATCCGGTTTCCATCATATCGACGACTTTACCGAGATCGCAGcc                                                                                                                                     >  2:556517/1‑140 (MQ=255)
   cTTTCTTGATAACCTGCCCATCGAGGAACGGTACGAGACGTTCCTTGATACCAAACGCATCTTTCAGGTTTGCCTTAATGACGAGAACGTCATTAGATCCGGTTTCCATCATATCGACGACTTTACCGAGATCGCAGCCt                                                                                                                                    >  2:123786/1‑140 (MQ=255)
       cTTGATAACCTGCCCATCGAGGAACGGTACGAGACGTTCCTTGATACCAAACGCATCTTTCAGGTTTGCCTTAATGACGAGAACGTCATTAGATCCGGTTTCCATCATATCGACGACTTTACCGAGATCGCAGCCTTCAg                                                                                                                                <  1:428502/140‑1 (MQ=255)
        ttGATAACCTGCCCATCGAGGAACGGTACGAGACGTTCCTTGATACCAAACGCATCTTTCAGGTTTGCCTTAATGACGAGAACGTCATTAGATCCGGTTTCCATCATATCGACGACTTTACCGAGATCGCAGCCTTCAGt                                                                                                                               <  1:588572/140‑1 (MQ=255)
           aTAACCTGCCCATCGAGGAACGGTACGAGACGTTCCTTGATACCAAACGCATCTTTCAGGTTTGCCTTAATGACGAGAACGTCATTAGATCCGGTTTCCATCATATCTACGACTTTACCGAGATCGCAGCCTTCAGTGGt                                                                                                                            <  1:540551/140‑1 (MQ=255)
           aTAACCTGCCCATCGAGGAACGGTACGAGACGTTCCTTGATACCAAACGCATCTTTCAGGTTTGCCTTAATGACGAGAACGTCATTAGATCCGGTTTCCATCATATCGACGACTTTACCGAGATCGCAGCCTTCAGTGGt                                                                                                                            <  2:632604/140‑1 (MQ=255)
             aaCCTGCCCATCGAGGAACGGTACGAGACGTTCCTTGATACCAAACGCATCTTTCAGGTTTGCCTTAATGACGAGAACGTCATTAGATCCGGTTTCCATCATATCGACGACTTTACCGAGATCGCAGCCTTCa                                                                                                                                 >  2:494098/1‑133 (MQ=255)
             aaCCTGCCCATCGAGGAACGGTACGAGACGTTCCTTGATACCAAACGCATCTTTCAGGTTTGCCTTAATGACGAGAACGTCATTAGATCCGGTTTCCATCATATCGACGACTTTACCGAGATCGCAGCCTTCa                                                                                                                                 <  1:494098/133‑1 (MQ=255)
                  gCCCATCGAGGAACGGTACGAGACGTTCCTTGATACCAAACGCATCTTTCAGGTTTACCTTAATGACGAGAACGTCATTAGATCCGGTTTCCATCATATCGACGACTTTACCGAGATCGCAGCCTTCAGTGGTTACTAcc                                                                                                                     >  1:938070/1‑140 (MQ=255)
                    ccATCGAGGAACGGTACGAGACGTTCCTTGATACCAAACGCATCTTTCAGGTTTGCCTTAATGACGAGAACGTCATTAGATCCGGTTTCCATCATATCGACGACTTTACCGAGATCGCAGCCTTCAGTGGTTACTACCTg                                                                                                                   >  1:866666/1‑140 (MQ=255)
                        cGAGGAACGGTACGAGACGTTCCTTGATACCAAACGCATCTTTCAGGTTTGCCTTAATGACGAGAACGTCATTAGATCCGGTTTCCATCATATCGACGACTTTACCGAGATCGCAGCCTTCAGTGGTTACTACCTGGCAg                                                                                                               <  2:959267/140‑1 (MQ=255)
                        cGAGGAACGGTACGAGACGTTCCTTGATACCAAACGCATCTTTCAGGTTTGCCTTAATGACGAGAACGTCATTAGATCCGGTTTCCATCATATCGACGACTTTACCGAGATCGCAGCCTTCAGTGGTTACTACCTGGCAg                                                                                                               <  1:374370/140‑1 (MQ=255)
                        cGAGGAACGGTACGAGACGTTCCTTGATACCAAACGCATCTTTCAGGTTTGCCTTAATGACGAGAACGTCATTAGATCCGGTTTCCATCATATCGACGACTTTACCGAGATCGCAGCCTTCAGTGGTTACTACCTGGCAg                                                                                                               >  1:321348/1‑140 (MQ=255)
                             aaCGGTACGAGACGTTCCTTGATACCAAACGCATCTTTCAGGTTTGCCTTAATGACGAGAACGTCATTAGATCCGGTTTCCATCATATCGACGACTTTACCGAGATCGCAGCCTTCAGTGGTTACTAcc                                                                                                                     <  2:351835/129‑1 (MQ=255)
                             aaCGGTACGAGACGTTCCTTGATACCAAACGCATCTTTCAGGTTTGCCTTAATGACGAGAACGTCATTAGATCCGGTTTCCATCATATCGACGACTTTACCGAGATCGCAGCCTTCAGTGGTTACTAcc                                                                                                                     >  1:351835/1‑129 (MQ=255)
                              aCGGTACGAGACGTTCCTTGATACCAAACGCATCTTTCAGGTTTGCCTTAATGACGAGAACGTCATTAGATCCGGTTTCCATCATATCGACGACTTTACCGAGATCGCAGCCTTCAGTGGTTACTACCTGGCAGCCCATc                                                                                                         >  2:78425/1‑140 (MQ=255)
                                 gTACGAGACGTTCCTTGATACCAAACGCATCTTTCAGGTTTGCCTTAATGACGAGAACGTCATTAGATCCGGTTTCCATCATATCGACGACTTTACCGAGATCGCAGCCTTCAGTGGTTACTACCTGGCAGccc                                                                                                            <  2:223682/134‑1 (MQ=255)
                                 gTACGAGACGTTCCTTGATACCAAACGCATCTTTCAGGTTTGCCTTAATGACGAGAACGTCATTAGATCCGGTTTCCATCATATCGACGACTTTACCGAGATCGCAGCCTTCAGTGGTTACTACCTGGCAGccc                                                                                                            >  1:223682/1‑134 (MQ=255)
                                  tACGAGACGTTCCTTGATACCAAACGCATCTTTCAGGTTTGCCTTAATGACGAGAACGTCATTAGATCCGGTTTCCATCATATGGACGACTTTACCGAGATCGCAGCCTTCAGTGGTTACTACCTGGCAGCCCATCAGGt                                                                                                     >  1:64517/1‑140 (MQ=255)
                                  tACGAGACGTTCCTTGATACCAAACGCATCTTTCAGGTTTGCCTTAATGACGAGAACGTCATTAGATCCGGTTTCCATCATATCGACGACTTTACCGAGATCGCAGCCTTCAGTGGTTACTACCTGGCAGCCCATCAGGt                                                                                                     <  2:53639/140‑1 (MQ=255)
                                  tACGAGACGTTCCTTGATACCAAACGCATCTTTCAGGTTTGCCTTAATGACGAGAACGTCATTAGATCCGGTTTCCATCATATCGACGACTTTACCGAGATCGCAGCCTTCAGTGGTTACTACCTGGCAGCCCATCAGGt                                                                                                     >  2:371450/1‑140 (MQ=255)
                                  tACGAGACGTTCCTTGATACCAAACGCATCTTTCAGGTTTGCCTTAATGACGAGAACGTCATTAGATCCGGTTTCCATCATATCGACGACTTTACCGAGATCGCAGCCTTCAGTGGTTACTACCTGGCAGCCCATCAGGt                                                                                                     <  1:636999/140‑1 (MQ=255)
                                  tACGAGACGTTCCTTGATACCAAACGCATCTTTCAGGTTTGCCTTAATGACGAGAACGTCATTAGATCCGGTTTCCATCATATCGACGACTTTACCGAGATCGCAGCCTTCAGTGGTTACTACCTGGCAGCCCATCAGGt                                                                                                     <  1:620731/140‑1 (MQ=255)
                                  tACGAGACGTTCCTTGATACCAAACGCATCTTTCAGGTTTGCCTTAATGACGAGAACGTCATTAGATCCGGTTTCCATCATATCGACGACTTTACCGAGATCGCAGCCTTCAGTGGTTACTACCTGGCAGCCCATCAGGt                                                                                                     >  2:620731/1‑140 (MQ=255)
                                  tACGAGACGTTCCTTGATACCAAACGCATCTTTCAGGTTTGCCTTAATGACGAGAACGTCATTAGATCCGGTTTCCATCATATCGACGACTTTACCGAGATCGCAGCCTTCAGTGGTTACTACCTGGCAGCCCATCAGGt                                                                                                     <  1:371450/140‑1 (MQ=255)
                                  tACGAGACGTTCCTTGATACCAAACGCATCTTTCAGGTTTGCCTTAATGACGAGAACGTCATTAGATCCGGTTTCCATCATATCGACGACTTTAACGAGATCGCAGCCTTCAGTGGTTACTACCTGGCAGCCCATCAGGt                                                                                                     <  1:260710/140‑1 (MQ=255)
                                  tACGAGACGTTCCTTGATACCAAACGCATCTTTCAGGTTTGCCTTAATGACGAGAACGTCATTAGATCCGGTTTCCATCATATCGACGACTTTAACGAGATCGCAGCCTTCAGTGGTTACTACCTGGCAGCCCATCAGGt                                                                                                     >  2:260710/1‑140 (MQ=255)
                                  tACGAGACGTTCCTTGATACCAAACGCATCTTTCACGTTTGCCTTAATGACGAGAACGTCATTAGATCCGGTTTCCATCATATCGACGACTTTACCGAGATCGCAGCCTTCAGTGGTTACTACCTGGCAGCCCATCAGGt                                                                                                     <  2:664112/140‑1 (MQ=255)
                                   aCGAGACGTTCCTTGATACCAAACGCATCTTTCAGGTTTGCCTTAATGACGAGAACGTCATTAGATCCGGTTTCCATCATATCGACGACTTTACCGAGATCGCAGCCTTCAGTGGTTACTACCTGGCAGCCCATCAGGTc                                                                                                    <  2:65048/140‑1 (MQ=255)
                                   aCGAGACGTTCCTTGATACCAAACGCATCTTTCAGGTTTGCCTTAATGACGAGAACGTCATTAGATCCGGTTTCCATCATATCGACGACTTTACCGAGATCGCAGCCTTCAGTGGTTACTACCTGGCAGCCCATCAGGTc                                                                                                    <  2:794965/140‑1 (MQ=255)
                                     gagaCGTTCCTTGATACCAAACGCATCTTTCAGGTTTGCCTTAATGACGAGAACGTCATTAGATCCGGTTTCCATCATATCGACGACTTTACCGAGATCGCAGCCTTCAGTGGTTACTACCTGGCAGCCCATCAGGTCtt                                                                                                  >  2:373259/1‑140 (MQ=255)
                                       gaCGTTCCTTGATACCAAACGCATCTTTCAGGTTTGCCTTAATGACGAGAACGTCATTAGATCCGGTTTCCATCATATCGACGACTTTACCGAGATCTCAGCCTTCAGTGGTTACTACCTGGCAGCCCATCAGGTCTTTc                                                                                                <  1:78425/140‑1 (MQ=255)
                                           ttCCTTGATACCAAACGCATCTTTCAGGTTTGCCTTAATGACGAGAACGTCATTAGATCCGGTTTCCATCATATCGACGACTTTACCGAGATCGCAGCCTTCAGTGGTTACTACCTGGCAGCCCATCAGGTCTTTCCagt                                                                                            <  1:577457/140‑1 (MQ=255)
                                                   tACCAAACGCATCTTTCAGGTTTGCCTTAATGACGAGAACGTCATTAGATCCGGTTTCCATCATATCGACGACTTTACCGAGATCGCAGCCTTCAGTGGTTACTACCTGGCAGCCCATCAGGTCTTTCCAGTAGTAGTcc                                                                                    >  1:485242/1‑140 (MQ=255)
                                                     ccAAACGCATCTTTCAGGTTTGCCTTAATGACGAGAACGTCATTAGATCCGGTTTCCATCATATCGACGACTTTACCGAGATCGCAGCCTTCAGTGGTTACTACCTGGCAGCCCATCAGGTCTTTCCAGTAGTAGTcccc                                                                                  <  2:321348/140‑1 (MQ=255)
                                                      cAAACGCATCTTTCAGGTTTGCCTTAATGACGAGAACGTCATTAGATCCGGTTTCCATCATATCGACGACTTTACCGAGATCGCAGCCTTCAGTGGTTACTACCTGGCAGCCCATCAGGTCTTTCCAGTAGTAGTccccc                                                                                 <  1:123786/140‑1 (MQ=255)
                                                        aaCGCATCTTTCAGGTTTGCCTTAATGACGAGAACGTCATTAGATCCGGTTTCCATCATATCGACGACTTTACCGAGATCGCAGCCTTCAGTGGTTACTACCTGGCAGCCCATCAGGTCTTTCCAGTAGTAGTCCCCctc                                                                               >  2:717560/1‑140 (MQ=255)
                                                           gCATCTTTCAGGTTTGCCTTAATGACGAGAACGTCATTAGATCCGGTTTCCATCATATCGACGACTTTACCGAGATCGCAGCCTTCAGTGGTTACTACCTGGCAGCCCATCAGGTCTTTCCAGTAGTAGTCCCCCTCTTc                                                                            >  1:360551/1‑140 (MQ=255)
                                                            cATCTTTCAGGTTTGCCTTAATGACGAGAACGTCATTAGATCCGGTTTCCATCATATCGACGACTTTACCGAGATCGCAGCCTTCAGTGGTTACTACCTGGCAGCCCATCAGGTCTTTCCAGTAGTAGTCCCCCTCTTCa                                                                           >  1:813166/1‑140 (MQ=255)
                                                            cATCTTTCAGGTTTGCCTTAATGACGAGAACGTCATTAGATCCGGTTTCCATCATATCGACGACTTTACCGAGATCGCAGCCTTCAGTGGTTACTACCTGGCAGCCCATCAGGTCTTTCCAGTAGTAGTCCCCCTCTTCa                                                                           >  2:48680/1‑140 (MQ=255)
                                                             aTCTTTCAGGTTTGCCTTAATGACGAGAACGTCATTAGATCCGGTTTCCATCATATCGACGACTTTACCGAGATCGCAGCCTTCAGTGGTTACTACCTGGCAGCCCATCAGGTCTTTCCAGTAGTAGTCCCCCTCtt                                                                             >  2:263042/1‑137 (MQ=255)
                                                             aTCTTTCAGGTTTGCCTTAATGACGAGAACGTCATTAGATCCGGTTTCCATCATATCGACGACTTTACCGAGATCGCAGCCTTCAGTGGTTACTACCTGGCAGCCCATCAGGTCTTTCCAGTAGTAGTCCCCCTCtt                                                                             <  1:263042/137‑1 (MQ=255)
                                                                       tttGCCTTAATGACGAGAACGTCATTAGATCCGGTTTCCATCATATCGACGACTTTACCGAGATCGCAGCCTTCAGTGGTTACTACCTGGCAGCCCATCAGGTCTTTCCAGTAGTAGTCCCCCTCTTCAAGCTGAGGCAg                                                                <  2:166134/140‑1 (MQ=255)
                                                                         tGCCTTAATGACGAGAACGTCATTAGATCCGGTTTCCATCATATCGACGACTTTACCGAGATCGCAGCCTTCAGTGGTTACTACCTGGCAGCCCATCAGGTCTTTCCAGTAGTAGTCCCCCTCTTCAAGCTGAgg                                                                   <  1:920211/135‑1 (MQ=255)
                                                                         tGCCTTAATGACGAGAACGTCATTAGATCCGGTTTCCATCATATCGACGACTTTACCGAGATCGCAGCCTTCAGTGGTTACTACCTGGCAGCCCATCAGGTCTTTCCAGTAGTAGTCCCCCTCTTCAAGCTGAgg                                                                   >  2:920211/1‑135 (MQ=255)
                                                                         tGCCTTAATGACGAGAACGTCATTAGATCCGGTTTCCATCATATCGACGACTTTACCGAGATCGCAGCCTTCAGTGGTTACTACCTGGCAGCCCATCAGGTCTTTCCAGTAGTAGTCCCCCTCTTCAAGCTGAGGCAGCt                                                              <  2:866666/140‑1 (MQ=255)
                                                                         tGCCTTAATGACGAGAACGTCATTAGATCCGGTTTCCATCATATCGACGACTTTACCGAGATCGCAGCCTTCAGTGGTTACTACCTGGCAGCCCATCAGGTCTTTCCAGTAGTAGTCCCCCTCTTCAAGCTGAGGCAGCt                                                              >  1:602937/1‑140 (MQ=255)
                                                                         tGCCTTAATGACGAGAACGTCATTAGATCCGGTTTCCATCATATCGACGACTTTACCGAGATCGCAGCCTTCAGTGGTTACTACCTGGCAGCCCATCAGGTCTTTCCAGTAGTAGTCCCCCTCTTCAAGCTGAGGCAGCt                                                              <  2:485242/140‑1 (MQ=255)
                                                                          gCCTTAATGACGAGAACGTCATTAGATCCGGTTTCCATCATATCGACGACTTTACCGAGATCGCAGCCTTCAGTGGTTACTACCTGGCAGCCCATCAGGTCTTTCCAGTAGTAGTCCCCCTCTTCAAGCTGAGGCAGCTg                                                             >  1:802195/1‑140 (MQ=255)
                                                                           ccTTAATGACGAGAACGTCATTAGATCCGGTTTCCATCATATCGACGACTTTACCGAGATCGCAGCCTTCAGTGGTTACTACCTGGCAGCCCATCAGGTCTTTCCAGTAGTAGTCCCCCTCTTCAAGCTGAGGCAGCTGc                                                            >  1:156298/1‑140 (MQ=255)
                                                                           ccTTAATGACGAGAACGTCATTAGATCCGGTTTCCATCATATCGACGACTTTACCGAGATCGCAGCCTTCAGTGGTTACTACCTGGCAGCCCATCAGGTCTTTCCAGTAGTAGTCCCCCTCTTCAAGCTGAGGCAGCTGc                                                            >  1:177504/1‑140 (MQ=255)
                                                                                 tGACGAGAACGTCATTAGATCCGGTTTCCATCATATCGACGAATTTACCGAGATCGCAGCCTTCAGTTGTTACTGCCTGGCAGCCCATCAGGTCTTTCCAGTAGTAGTCCCCCTCTTCAAGCTGAGGCAGCTGCGATGaa                                                      <  2:285201/140‑1 (MQ=255)
                                                                                             cATTAGATCCGGTTTCCATCATATCGACGACTTTACCGAGATCGCAGCCTTCAGTGGTTACTACCTGGCAGCCCATCAGGTCTTTCCAGTAGTAGTCCCCCTCTTCAAGCTGAGGCAGCTGCGATGAATCCACGACAAtt                                          >  2:257371/1‑140 (MQ=255)
                                                                                                  gATCCGGTTTCCATCATATCGACGACTTTACCGAGATCGCAGCCTTCAGTGGTTACTACCTGGCAGCCCATCAGGTCTTTCCAGTAGTAGTCCCCCTCTTCAAGCTGAGGCAGCTGCGATGAATCCACGACAATTTcaca                                     >  2:473795/1‑140 (MQ=255)
                                                                                                   aTCCGGTTTCCATCATATCGACGACTTTACCGAGATCGCAGCCTTCAGTGGTTACTACCTGGCAGCCCATCAGGTCTTTCCAGTAGTAGTCCCCCTCTTCAAGCTGAGGCAGCTGCGATGAATCCACGACAATTTCACaa                                    >  2:274477/1‑140 (MQ=255)
                                                                                                   aTCCGGTTTCCATCATATCGACGACTTTACCGAGATCGCAGCCTTCAGTGGTTACTACCTGGCAGCCCATCAGGTCTTTCCAGTAGTAGTCCCCCTCTTCAAGCTGAGGCAGCTGCGATGAATCCACGACAATTTCACaa                                    >  1:625707/1‑140 (MQ=255)
                                                                                                      cGGTTTCCATCATATCGACGACTTTACCGAGATCGCAGCCTTCAGTGGTTACTACCTGGCAGCCCATCAGGTCTTTCCAGTAGTAGTCCCCCTCTTCAAGCTGAGGCAGCTGCGATGAATCCACGACAATTTCACAATTc                                 >  1:203249/1‑140 (MQ=255)
                                                                                                       ggTTTCCATCATATCGACGACTTTACCGAGATCGCAGCCTTCAGTGGTTACTACCTGGCAGCCCATCAGGTCTTTCCAGTAGTAGTCCCCCTCTTCAAGCTGAGGCAGCTGCGATGAATCCACGACAATTTCACAATTCg                                >  2:445931/1‑140 (MQ=255)
                                                                                                        gTTTCCATCATATCGACGACTTTACCGAGATCGCAGCCTTCAGTGGTTACTACCTGGCAGCCCATCAGGTCTTTCCAGTAGTAGTCCCCCTCTTCAAGCTGAGGCAGCTGCGATGAATCCACGACAATTTCACAATTCGt                               >  2:611059/1‑140 (MQ=255)
                                                                                                            ccATCATATCGACGACTTTACCGAGATCGCAGCCTTCAGTGGTTACTACCTGGCAGCCCATCAGGTCTTTCCAGTAGTAGTCCCCCTCTTCAAGCTGAGGCAGCTGCGATGAATCCACGACAATTTCACAATTCGTcagc                           >  2:202930/1‑140 (MQ=255)
                                                                                                               tcatATCGACGACTTTACCGAGATCGCAGCCTTCAGTGGTTACTACCTGGCAGCCCATCAGGTCTTTCCAGTAGTAGTCCCCCTCTTCAAGCTGAGGCAGCTGCGATGAATCCACGACAATTTCACAATTCGTCAGCAgg                        <  1:556517/140‑1 (MQ=255)
                                                                                                                   atCGACGACTTTACCGAGATCGCAGCCTTCAGTGGTTACTACCTGGCAGCCCATCAGGTCTTTCCAGTAGTAGTCCCCCTCTTCAAGCTGAGGCAGCTGCGATGAATCCACGACAATTTCACAATTCGTCAGCAGGTTcg                    <  1:48680/140‑1 (MQ=255)
                                                                                                                    tCGACGACTTTACCGAGATCGCAGCCTTCAGTGGTTACTACCTGGCAGCCCATCAGGTCTTTCCAGTAGTAGTCCCCCTCTTCAAGCTGAGGCAGCTGCGATGAATCCACGACAATTTCACAATTCGTCAGCAGGTTcgc                   <  1:473795/140‑1 (MQ=255)
                                                                                                                    tCGACGACTTTACCGAGATCGCAGCCTTCAGTGGTTACTACCTGGCAGCCCATCAGGTCTTTCCAGTAGTAGTCCCCCTCTTCAAGCTGAGGCAGCTGCGATGAATCCACGACAATTTCACAATTCGTCAGCAGGTTcgc                   <  2:802195/140‑1 (MQ=255)
                                                                                                                    tCGACGACTTTACCGAGATCGCAGCCTTCAGTGGTTACTACCTGGCAGCCCATCAGGTCTTTCCAGTAGTAGTCCCCCTCTTCAAGCTGAGGCAGCTGCGATGAATCCACGACAATTTCACAATTCGTCAGCAGGTTcgc                   <  2:177504/140‑1 (MQ=255)
                                                                                                                     cgacgaCTTTACCGAGATCGCAGCCTTCAGTGGTTACTACCTGGCAGCCCATCAGGTCTTTCCAGTAGTAGTCCCCCTCTTCAAGCTGAGGCAGCTGCGATGAATCCACGACAATTTCACAATTCGTCAGCAGGTTcgcc                  >  1:238127/1‑140 (MQ=255)
                                                                                                                       acgacTTTACCGAGATCGCAGCCTTCAGTGGTTACTACCTGGCAGCCCATCAGGTCTTTCCAGTAGTAGTCCCCCTCTTCAAGCTGAGGCAGCTGCGATGAATCCACGACAATTTCACAATTCGTCAGCAGGTTcg                    <  1:381496/136‑1 (MQ=255)
                                                                                                                       acgacTTTACCGAGATCGCAGCCTTCAGTGGTTACTACCTGGCAGCCCATCAGGTCTTTCCAGTAGTAGTCCCCCTCTTCAAGCTGAGGCAGCTGCGATGAATCCACGACAATTTCACAATTCGTCAGCAGGTTcg                    >  2:381496/1‑136 (MQ=255)
                                                                                                                        cgacTTTACCGAGATCGCAGCCTTCAGTGGTTACTACCTGGCAGCCCATCAGGTCTTTCCAGTAGTAGTCCCCCTCTTCAAGCTGAGGCAGCTGCGATGAATCCACGACAATTTCACAATTCGTCAGCAGGTTCGCCGCa               <  2:64517/140‑1 (MQ=255)
                                                                                                                        cgacTTTACCGAGATCGCAGCCTTCAGTGGTTACTACCTGGCAGCCCATCAGGTCTTTCCAGTAGTAGTCCCCCTCTTCAAGCTGAGGCAGCTGCGATGAATCCACGACAATTTCACAATTCGTCAGCAGGTTCGCCGCa               <  1:717560/140‑1 (MQ=255)
                                                                                                                                     aTCGCAGCCTTCAGTGGTTACTACCTGGCAGCCCATCAGGTCTTTCCAGTAGTAGTCCCCCTCTTCAAGCTGAGGCAGCTGCGATGAATCCACGACAATTTCACAATTCGTCAGCAGGTTCGCCGCATCACGATCGTCaa  >  2:370588/1‑140 (MQ=255)
                                                                                                                                     aTCGCAGCCTTCAGTGGTTACTACCTGGCAGCCCATCAGGTCTTTCCAGTAGTAGTCCCCCTCTTCAAGCTGAGGCAGCTGCGATGAATCCACGACAATTTCACAATTCGTCAGCAGGTTCGCCGCATCACGATCGTCaa  <  1:445931/140‑1 (MQ=255)
                                                                                                                                     aTCGCAGCCTTCAGTGGTTACTACCTGGCAGCCCATCAGGTCTTTCCAGTAGTAGTCCCCCTCTTCAAGCTGAGGCAGCTGCGATGAATCCACGACAATTTCACAATTCGTCAGCAGGTTCGCCGCATCACGATCGTCaa  <  1:282944/140‑1 (MQ=255)
                                                                                                                                     aTCGCAGCCTTCAGTGGTTACTACCTGGCAGCCCATCAGGTCTTTCCAGTAGTAGTCCCCCTCTTCAAGCTGAGGCAGCTGCGATGAATCCACGACAATTTCACAATTCGTCAGCAGGTTCGCCGCATCACGATCGTCaa  <  1:611059/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                       
CGACTTTCTTGATAACCTGCCCATCGAGGAACGGTACGAGACGTTCCTTGATACCAAACGCATCTTTCAGGTTTGCCTTAATGACGAGAACGTCATTAGATCCGGTTTCCATCATATCGACGACTTTACCGAGATCGTAGCCTTCAGTGGTTACTACCTGGCAGCCCATCAGGTCTTTCCAGTAGTAGTCCCCCTCTTCAAGCTGAGGCAGCTGCGATGAATCCACGACAATTTCACAATTCGTCAGCAGGTTCGCCGCATCACGATCGTCAA  >  NC_000913/2745417‑2745689

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A