Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A10 F28 I1 R1 116 72.9 2471836 99.3% 2454533 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,659,951 A→G V240V (GTA→GTG)  mdtE → multidrug efflux pump membrane fusion protein MdtE

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,659,9510AG100.0% 254.5 / NA 71V240V (GTA→GTG) mdtEmultidrug efflux pump membrane fusion protein MdtE
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (40/31);  total (40/31)

GGCAGATTCGCTGGTTACCGTACAACGTCTGGACCCGATTTATGTCGATCTCACGCAGTCGGTGCAAGATTTCTTACGCATGAAAGAAGAGGTCGCCAGTGGGCAAATCAAACAGGTTCAGGGCAGTACGCCAGTACAGCTCAATCTGGAAAATGGTAAACGCTACAGCCAGACCGGCACGCTGAAATTCTCCGACCCGACAGTGGATGAAACCACGGGCTCCGTGACGTTACGGGCGATTTTCCCCAACCCAAATGGTGACTTGCTGCC  >  NC_000913/3659816‑3660085
                                                                                                                                       |                                                                                                                                      
ggCAGATTCGCTGGTTACCGTACAACGTCTGGACCCGATTTATGTCGATCTCACGCAGTCGGTGCAAGATTTCTTACGCATGAAAGAAGAGGTCGCCAGTGGGCAAATCAAACAGGTTCAGGGCAGTACGCCAGTGCAGc                                                                                                                                    >  1:259606/1‑140 (MQ=255)
 gCAGATTCGCTGGTTACCGTACAACGTCTGGACCCGATTTATGTCGATCTCACGCAGTCGGTGCAAGATTTCTTACGCATGAAAGAAGAGGTCGCCAGTGGGCAAATCAAACAGGTTCAGGGCAGTACGCCAGTGCAGCt                                                                                                                                   <  2:45416/140‑1 (MQ=255)
    gATTCGCTGGTTACCGTACAACGTCTGGACCCGATTTATGTCGATCTCACGCAGTCGGTGCAAGATTTCTTACGCATGAAAGAAGAGGTCGCCAGTGGGCAAATCAAACAGGTTCAGGGCAGTACGCCAGTGCAGCTCaa                                                                                                                                >  1:814116/1‑140 (MQ=255)
      ttCGCTGGTTACCGTACAACGTCTGGACCCGATTTATGTCGATCTCACGCAGTCGGTGCAAGATTTCTTACGCATGAAAGAAGAGGTCGCCAGTGGGCAAATCAAACAGGTTCAGGGCAGTACGCCAGTGCAGCTCAATc                                                                                                                              >  2:221072/1‑140 (MQ=255)
              ttACCGTACAACGTCTGGACCCGATTTATGTCGATCTCACGCAGTCGGTGCAAGATTTCTTACGCATGAAAGAAGAGGTCGCCAGTGGGCAAATCAAACAGGTTCAGGGCAGTACGCCAGTGCAGCTCAATCTGGAAAAt                                                                                                                      <  1:221072/140‑1 (MQ=255)
               tACCGTACAACGTCTGGACCCGATTTATGTCGATCTCACGCAGTCGGTGCAAGATTTCTTACGCATGAAAGAAGAGGTCGCCAGTGGGCAAATCAAACAGGTTCAGGGCAGTACGCCAGTGCAGCTCAATCTGGAAAATg                                                                                                                     >  2:30936/1‑140 (MQ=255)
               tACCGTACAACGTCTGGACCCGATTTATGTCGATCTCACGCAGTCGGTGCAAGATTTCTTACGCATGAAAGAAGAGGTCGCCAGTGGGCAAATCAAACAGGTTCAGGGCAGTACGCCAGTGCAGCTCAATCTGGAAAATg                                                                                                                     >  2:36753/1‑140 (MQ=255)
                  cGTACAACGTCTGGACCCGATTTATGTCGATCTCACGCAGTCGGTGCAAGATTTCTTACGCATGAAAGAAGAGGTCGCCAGTGGGCAAATCAAACAGGTTCAGGGCAGTACGCCAGTGCAGCTCAATCTGGAAAATGGTa                                                                                                                  <  2:574279/140‑1 (MQ=255)
                   gTACAACGTCTGGACCCGATTTATGTCGATCTCACGCAGTCGGTGCAAGATTTCTTACGCATGAAAGAAGAGGTCGCCAGTGGGCAAATCAAACAGGTTCAGGGCAGTACGCCAGTGCAGCTCAATCTGGAAAATGGTaa                                                                                                                 <  2:921276/140‑1 (MQ=255)
                     aCAACGTCTGGACCCGATTTATGTCGATCTCACGCAGTCGGTGCAAGATTTCTTACGCATGAAAGAAGAGGTCGCCAGTGGGCAAATCAAACAGGTTCAGGGCAGTACGCCAGTGCAGCTCAATCTGGAAAATGGCAAAc                                                                                                               >  2:719388/1‑140 (MQ=255)
                       aaCGTCTGGACCCGATTTATGTCGATCTCACGCAGTCGGTGCAAGATTTCTTACGCATGAAAGAAGAGGTCGCCAGTGGGCAAATCAAACAGGTTCAGGGCAGTACGCCAGTGCAGCTCAATCTGGAAAATGGTa                                                                                                                  <  2:129283/135‑1 (MQ=255)
                       aaCGTCTGGACCCGATTTATGTCGATCTCACGCAGTCGGTGCAAGATTTCTTACGCATGAAAGAAGAGGTCGCCAGTGGGCAAATCAAACAGGTTCAGGGCAGTACGCCAGTGCAGCTCAATCTGGAAAATGGTa                                                                                                                  >  1:129283/1‑135 (MQ=255)
                        aCGTCTGGACCCGATTTATGTCGATCTCACGCAGTCGGTGCAAGATTTCTTACGCATGAAAGAAGAGGTCGCCAGTGGGCAAATCAAACAGGTTCAGGGCAGTACGCCAGTGCAGCTCAATCTGGAAAATGGTAAACGCt                                                                                                            <  1:1080691/140‑1 (MQ=255)
                         cGTCTGGACCCGATTTATGTCGATCTCACGCAGTCGGTGCAAGATTTCTTACGCATGAAAGAAGAGGTCGCCAGTGGGCAAATCAAACAGGTTCAGGGCAGTACGCCAGTGCAGCTCAATCTGGAAAATGGTAAACGCTa                                                                                                           >  2:445711/1‑140 (MQ=255)
                           tCTGGACCCGATTTATGTCGATCTCACGCAGTCGGTGCAAGATTTCTTACGCATGAAAGAAGAGGTCGCCAGTGGGCAAATCAAACAGGTTCAGGGCAGTACGCCAGTGCAGCTCAATCTGGAAAATGGTAAACGCTACa                                                                                                         >  2:909172/1‑140 (MQ=255)
                           tCTGGACCCGATTTATGTCGATCTCACGCAGTCGGTGCAAGATTTCTTACGCATGAAAGAAGAGGTCGCCAGTGGGCAAATCAAACAGGTTCAGGGCAGTACGCCAGTGCAGCTCAATCTGGAAAATGGTAAACGCTACa                                                                                                         >  1:1161509/1‑140 (MQ=255)
                            cTGGACCCGATTTATGTCGATCTCACGCAGTCGGTGCAAGATTTCTTACGCATGAAAGAAGAGGTCGCCAGTGGGCAAATCAAACAGGTTCAGGGCAGTACGCCAGTGCAGCTCAATCTGGAAAATGGTAAACGCTACAg                                                                                                        >  2:494499/1‑140 (MQ=255)
                              ggACCCGATTTATGTCGATCTCACGCAGTCGGTGCAAGATTTCTTACGCATGAAAGAAGAGGTCGCCAGTGGGCAAATCAAACAGGTTCAGGGCAGTACGCCAGTGCAGCTCAATCTGGAAAATGGTAAACGCTACAGcc                                                                                                      >  1:1126063/1‑140 (MQ=255)
                                     aTTTATGTCGATCTCACGCAGTCGGTGCAAGATTTCTTACGCATGAAAGAAGAGGTCGCCAGTGGGCAAATCAAACAGGTTCAGGGCAGTACGCCAGTGCAGCTCAATCTGGAAAATGGTAAACGCTACAGCCAGACCgg                                                                                               >  2:1098764/1‑140 (MQ=255)
                                     aTTTATGTCGATCTCACGCAGTCGGTGCAAGATTTCTTACGCATGAAAGAAGAGGTCGCCAGTGGGCAAATCAAACAGGTTCAGGGCAGTACGCCAGTGCAGCTCAATCTGGAAAATGGTAAACGCTACAGCCAGACCgg                                                                                               <  1:30936/140‑1 (MQ=255)
                                       ttATGTCGATCTCACGCAGTCGGTGCAAGATTTCTTACGCATGAAAGAAGAGGTCGCCAGTGGGCAAATCAAACAGGTTCAGGGCAGTACGCCAGTGCAGCTCAATCTGGAAAATGGTAAACGCTACAGCCAGACCGGCa                                                                                             <  2:137456/140‑1 (MQ=255)
                                                  tcACGCAGTCGGTGCAAGATTTCTTACGCATGAAAGAAGAGGTCGCCAGTGGGCAAATCAAACAGGTTCAGGGCAGTACGCCAGTGCAGCTCAATCTGGAAAATGGTAAACGCTACAGCCAGACCGGCACGCTGAAATtc                                                                                  <  1:719388/140‑1 (MQ=255)
                                                     cGCAGTCGGTGCAAGATTTCTTACGCATGAAAGAAGAGGTCGCCAGTGGGCAAATCAAACAGGTTCAGGGCAGTACGCCAGTGCAGCTCAATCTGGAAAATGGTAAACGCTACAGCCAGACCGGCACGCTGAAATTCTcc                                                                               >  1:911931/1‑140 (MQ=255)
                                                         gTCGGTGCAAGATTTCTTACGCATGAAAGAAGAGGTCGCCAGTGGGCAAATCAAACAGGTTCAGGGCAGTACGCCAGTGCAGCTCAATCTGGAAAATGGTAAACGCTACAGCCAGACCGGCACGCTGAAATTCTccgacc                                                                           >  1:23531/1‑140 (MQ=255)
                                                          tCGGTGCAAGATTTCTTACGCATGAAAGAAGAGGTCGCCAGTGGGCAAATCAAACAGGTTCAGGGCAGTACGCCAGTGCAGCTCAATCTGGAAAATGGTAAACGCTACAGCCAGACCGGCACGCTGAAATtctc                                                                                <  1:716252/134‑1 (MQ=255)
                                                          tCGGTGCAAGATTTCTTACGCATGAAAGAAGAGGTCGCCAGTGGGCAAATCAAACAGGTTCAGGGCAGTACGCCAGTGCAGCTCAATCTGGAAAATGGTAAACGCTACAGCCAGACCGGCACGCTGAAATtctc                                                                                >  2:716252/1‑134 (MQ=255)
                                                          tCGGTGCAAGATTTCTTACGCATGAAAGAAGAGGTCGCCAGTGGGCAAATCAAACAGGTTCAGGGCAGTACGCCAGTGCAGCTCAATCTGGAAAATGGTAAACGCTACAGCCAGACCGGCACGCTGAAATTCTccgaccc                                                                          <  2:1190285/140‑1 (MQ=255)
                                                            ggTGCAAGATTTCTTACGCATGAAAGAAGAGGTCGCCAGTGGGCAAATCAAACAGGTTCAGGGCAGTACGCCAGTGCAGCTCAATCTGGAAAATGGTAAACGCTACAGCCAGACCGGCACGCTGAAATTCTccgacccga                                                                        <  1:325017/140‑1 (MQ=255)
                                                            ggTGCAAGATTTCTTACGCATGAAAGAAGAGGTCGCCAGTGGGCAAATCAAACAGGTTCAGGGCAGTACGCCAGTGCAGCTCAATCTGGAAAATGGTAAACGCTACAGCCAGACCGGCACGCTGAAATTCTccgacccga                                                                        <  1:1173775/140‑1 (MQ=255)
                                                            ggTGCAAGATTTCTTACGCATGAAAGAAGAGGTCGCCAGTGGGCAAATCAAACAGGTTCAGGGCAGTACGCCAGTGCAGCTCAATCTGGAAAATGGTAAACGCTACAGCCAGACCGGCACGCTGAAATTCTccgacccga                                                                        >  2:413425/1‑140 (MQ=255)
                                                                   gATTTCTTACGCATGAAAGAAGAGGTCGCCAGTGGGCAAATCAAACAGGTTCAGGGCAGTACGCCAGTGCAGCTCAATCTGGAAAATGGTAAACGCTACAGCCAGACCGGCACGCTGAAATTCTCCGACCCGACAGTGGa                                                                 <  1:445711/140‑1 (MQ=255)
                                                                    aTTTCTTACGCATGAAAGAAGAGGTCGCCAGTGGGCAAATCAAACAGGTTCAGGGCAGTACGCCAGTGCAGCTCAATCTGGAAAATGGTAAACGCTACAGCCAGACCGGCACGCTGAAATTCTCCGACCCGACAGTGGAt                                                                >  1:769350/1‑140 (MQ=255)
                                                                     tttCTTACGCATGAAAGAAGAGGTCGCCAGTGGGCAAATCAAACAGGTTCAGGGCAGTACGCCAGTGCAGCTCAATCTGGAAAATGGTAAACGCTACAGCCAGACCGGCACGCTGAAATTCTCCGACCCGACAGTGGATg                                                               <  2:463057/140‑1 (MQ=255)
                                                                        cTTACGCATGAAAGAAGAGGTCGCCAGTGGGCAAATCAAGCAGGTTCAGGGCAGTACGCCAGTGCAGCTCAATCTGGAAAATGGTAAACGCTACAGCCAGACCGGCACGCTGAAATTCTCCGACCCGACAGTGGATGaaa                                                            >  2:1167934/1‑140 (MQ=255)
                                                                          tACGCATGAAAGAAGAGGTCGCCAGTGGGCAAATCAAACAGGTTCAGGGCAGTACGCCAGTGCAGCTCAATCTGGAAAATGGTAAACGCTACAGCCAGACCGGCACGCTGAAATTCTccgacccga                                                                        >  2:325612/1‑126 (MQ=255)
                                                                          tACGCATGAAAGAAGAGGTCGCCAGTGGGCAAATCAAACAGGTTCAGGGCAGTACGCCAGTGCAGCTCAATCTGGAAAATGGTAAACGCTACAGCCAGACCGGCACGCTGAAATTCTccgacccga                                                                        <  1:325612/126‑1 (MQ=255)
                                                                             gCATGAAAGAAGAGGTCGCCAGTGGGCAAATCAAACAGGTTCAGGGCAGTACGCCAGTGCAGCTCAATCTGGAAAATGGTAAACGCTACAGCCAGACCGGCACGCTGAAATTCTCCGACCCGACAGTGGATGAAACCAc                                                        <  1:848415/139‑1 (MQ=255)
                                                                             gCATGAAAGAAGAGGTCGCCAGTGGGCAAATCAAACAGGTTCAGGGCAGTACGCCAGTGCAGCTCAATCTGGAAAATGGTAAACGCTACAGCCAGACCGGCACGCTGAAATTCTCCGACCCGACAGTGGATGAAACCAc                                                        >  2:848415/1‑139 (MQ=255)
                                                                             gCATGAAAGAAGAGGTCGCCAGTGGGCAAATCAAACAGGTTCAGGGCAGTACGCCAGTGCAGCTCAATCTGGAAAATGGTAAACGCTACAGCCAGACCGGCACGCTGAAATTCTCCGACCCGACAGTGGATGAAACCACg                                                       >  2:611162/1‑140 (MQ=255)
                                                                               aTGAAAGAAGAGGTCGCCAGTGGGCAAATCAAGCAGGTTCAGGGCAGTACGCCAGTGCAGCTCAATCTGGAAAATGGTAAACGCTACAGCCAGACCGGCACGCTGAAATTCTCCGACCCGACAGTGGATGAAACCACggg                                                     <  1:1167934/140‑1 (MQ=255)
                                                                                     gaagaGGTCGCCAGTGGGCAAATCAAACAGGTTCAGGGCAGTACGCCAGTGCAGCTCAATCTGGAAAATGGTAAACGCTACAGCCAGACCGGCACGCTGAAATTCTCCGACCCGACAGTGGATGAAACCACGGGCTCCGt                                               <  2:815922/140‑1 (MQ=255)
                                                                                       agagGTCGCCAGTGGGCAAATCAAACAGGTTCAGGGCAGTACGCCAGTGCAGCTCAATCTGGAAAATGGTAAACGCTACAGCCAGACCGGCACGCTGAAATTCTCCGACCCGACAGTGGATGAAACCACGGGCTCCGTGa                                             >  2:175034/1‑140 (MQ=255)
                                                                                        gagGTCGCCAGTGGGCAAATCAAACAGGTTCAGGGCAGTACGCCAGTGCAGCTCAATCTGGAAAATGGTAAACGCTACAGCCAGACCGGCACGCTGAAATTCTCCGACCCGACAGTGGATGAAACCACGGGCTCCGTGAc                                            <  2:612372/140‑1 (MQ=255)
                                                                                         agGTCGCCAGTGGGCAAATCAAACAGGTTCAGGGCAGTACGCCAGTGCAGCTCAATCTGGAAAATGGTAAACGCTACAGCCAGACCGGCACGCTGAAATTCTCCGACCCGACAGTGGATGAAACCACGGGCTCCGTGACg                                           >  1:154330/1‑140 (MQ=255)
                                                                                           gTCGCCAGTGGGCTAATCAAACAGGTTCAGGGCAGTACGCCAGTGCAGCTCAATCTGGAAAATGGTAAACGCTACAGCCAGACCGGCACGCTGAAATTCTCCGACCCGACAGTGGATGAAACCACGGGCTCCGTGACGtt                                         >  2:1060469/1‑140 (MQ=255)
                                                                                           gTCGCCAGTGGGCAAATCAAACAGGTTCAGGGCAGTACGCCAGTGCAGCTCAATCTGGAAAATGGTAAACGCTACAGCCAGACCGGCACGCTGAAATTCTCCGACCCGACAGTGGATGAAACCACGGGCTCCGTGACGtt                                         >  1:1014937/1‑140 (MQ=255)
                                                                                           gTCGCCAGTGGGCAAATCAAACAGGTTCAGGGCAGTACGCCAGTGCAGCTCAATCTGGAAAATGGTAAACGCTACAGCCAGACCGGCACGCTGAAATTCTCCGACCCGACAGTGGATGAAACCACGGGCTCCGTGACGtt                                         >  2:680134/1‑140 (MQ=255)
                                                                                           gTCGCCAGTGGGCAAATCAAACAGGTTCAGGGCAGTACGCCAGTGCAGCTCAATCTGGAAAATGGTAAACGCTACAGCCAGACCGGCACGCTGAAATTCTCCGACCCGACAGTGGATGAAACCACGGGCTCCGTGACGtt                                         >  2:706180/1‑140 (MQ=255)
                                                                                           gTCGCCAGTGGGCAAATCAAACAGGTTCAGGGCAGTACGCCAGTGCAGCTCAATCTGGAAAATGGTAAACGCTACAGCCAGACCGGCACGCTGAAATTCTCCGACCCGACAGTGGATGAAACCACGGGCTCCGTGACGtt                                         >  1:896404/1‑140 (MQ=255)
                                                                                           gTCGCCAGTGGGCAAATCAAACAGGTTCAGGGCAGTACGCCAGTGCAGCTCAATCTGGAAAATGGTAAACGCTACAGCCAGACCGGCACGCTGAAATTCTCCGACCCGACAGTGGATGAAACCACGGGCTCCGTGACGtt                                         <  2:769350/140‑1 (MQ=255)
                                                                                           gTCGCCAGTGGGCAAATCAAACAGGTTCAGGGCAGTACGCCAGTGCAGCTCAATCTGGAAAATGGTAAACGCTACAGCCAGACCGGCACGCTGAAATTCTCCGACCCGACAGTGGATGAAACCACGGGCTCCGTGACGtt                                         >  1:446231/1‑140 (MQ=255)
                                                                                           gTCGCCAGTGGGCAAATCAAACAGGTTCAGGGCAGTACGCCAGTGCAGCTCAATCTGGAAAATGGTAAACGCTACAGCCAGACCGGCACGCTGAAATTCTCCGACCCGACAGTGGATGAAACCACGGGCTCCGTGACGtt                                         >  1:1193755/1‑140 (MQ=255)
                                                                                           gTCGCCAGTGGGCAAATCAAACAGGTTCAGGGCAGTACGCCAGTGCAGCTCAATCTGGAAAATGGTAAACGCTACAGCCAGACCGGCACGCTGAAATGCTCCGACCCGACAGTGGATGAAACCACGGGCTCCGTGACGtt                                         >  2:1145431/1‑140 (MQ=255)
                                                                                             cGCCAGTGGGCAAATCAAACAGGTTCAGGGCAGTACGCCAGTGCAGCTCAATCTGGAAAATGGTAAACGCTACAGCCAGACCGGCACGCTGAAATTCTCCGACCCGACAGTGGATGAAACCACGGGCTCCGTGACGTTAc                                       >  2:727245/1‑140 (MQ=255)
                                                                                              gCCAGTGGGCAAATCAAACAGGTTCAGGGCAGTACGCCAGTGCAGCTCAATCTGGAAAATGGTAAACGCTACAGCCAGACCGGCACGCTGAAATTCTCCGACCCGACAGTGGATGAAACCACGGGCTCCGTGACGTTACg                                      >  1:965523/1‑140 (MQ=255)
                                                                                                     ggCAAATCAAACAGGTTCAGGGCAGTACGCCAGTGCAGCTCAATCTGGAAAATGGTAAACGCTACAGCCAGACCGGCACGCTGAAATTCTCCGACCCGACAGTGGATGAAACCACGGGCTCCGTGACGTTACGGGCGAtt                               <  2:911931/140‑1 (MQ=255)
                                                                                                       cAAATCAAACAGGTTCAGGGCAGTACGCCAGTGCAGCTCAATCTGGAAAATGGTAAACGCTACAGCCAGACCGGCACGCTGAAATTCTCCGACCCGACAGTGGATGAAACCACGGGCTCCGTGACGTTACGGGCGAtttt                             >  2:962403/1‑140 (MQ=255)
                                                                                                           tCAAACAGGTTCAGGGCAGTACGCCAGTGCAGCTCAATCTGGAAAATGGTAAACGCTACAGCCAGACCGGCACGCTGAAATTCTCCGACCCGACAGTGGATGAAACCACGGGCTCCGTGACGTTACGGGCGATTTTcccc                         <  2:896404/140‑1 (MQ=255)
                                                                                                           tCAAACAGGTTCAGGGCAGTACGCCAGTGCAGCTCAATCTGGAAAATGGTAAACGCTACAGCCAGACCGGCACGCTGAAATTCTCCGACCCGACAGTGGATGAAACCACGGGCTCCGTGACGTTACGGGCGATTTTcccc                         <  1:413425/140‑1 (MQ=255)
                                                                                                               aCAGGTTCAGGGCAGTACGCCAGTGCAGCTCAATCTGGAAAATGGTAAACGCTACAGCCAGACCGGCACGCTGAAATTCTCCGACCCGACAGTGGATGAAACCACGGGCTCCGTGACGTTACGGGCGATTTTCcccaacc                     <  2:446231/140‑1 (MQ=255)
                                                                                                               aCAGGTTCAGGGCAGTACGCCAGTGCAGCTCAATCTGGAAAATGGTAAACGCTACAGCCAGACCGGCACGCTGAAATTCTCCGACCCGACAGTGGATGAAACCACGGGCTCCGTGACGTTACGGGCGATTTTCcccaacc                     <  1:962403/140‑1 (MQ=255)
                                                                                                               aCAGGTTCAGGGCAGTACGCCAGTGCAGCTCAATCTGGAAAATGGTAAACGCTACAGCCAGACCGGCACGCTGAAATTCTCCGACCCGACAGTGGATGAAACCACGGGCTCCGTGACGTTACGGGCGATTTTCcccaacc                     >  1:580834/1‑140 (MQ=255)
                                                                                                                    ttCAGGGCAGTACGCCAGTGCAGCTCAATCTGGAAAATGGTAAACGCTACAGCCAGACCGGCACTCTGAAATTCTCCGACCCGACAGTGGATGAAACCACGGGCTCCGTGACGTTACGGGCGATTTTCcccaaccc                    <  2:858495/136‑1 (MQ=255)
                                                                                                                    ttCAGGGCAGTACGCCAGTGCAGCTCAATCTGGAAAATGGTAAACGCTACAGCCAGACCGGCACGCTGAAATTCTCCGACCCGACAGTGGATGAAACCACGGGCTCCGTGACGTTACGGGCGATTTTCcccaaccc                    >  1:858495/1‑136 (MQ=255)
                                                                                                                    ttCAGGGCAGTACGCCAGTGCAGCTCAATCTGGAAAATGGTAAACGCTACAGCCAGACCGGCACGCTGAAATTCTCCGACCCGACAGTGGATGAAACCACGGGCTCCGTGACGTTACGGGCGATTTTCCCCAACCCAAAt                >  1:635846/1‑140 (MQ=255)
                                                                                                                       aGGGCAGTACGCCAGTGCAGCTCAATCTGGAAAATGGTAAACGCTACAGCCAGACCGGCACGCTGAAATTCTCCGACCCGACAGTGGATGAAACCACGGGCTCCGTGACGTTACGGGCGATTTTCCCCAACCCAAATGGt             <  2:814116/140‑1 (MQ=255)
                                                                                                                        gggCAGTACGCCAGTGCAGCTCAATCTGGAAAATGGTAAACGCTACAGCCAGACCGGCACGCTGAAATTCTCCGACCCGACAGTGGATGAAACCACGGGCTCCGTGACGTTACGGGCGATTTTCCCCAACCCAAATGGTg            <  2:965523/140‑1 (MQ=255)
                                                                                                                             gTACGCCAGTGCAGCTCAATCTGGAAAATGGTAAACGCTACAGCCAGACCGGCACGCTGAAATTCTCCGACCCGACAGTGGATGAAACCACGGGCTCCGTGACGTTACGGGCGATTTTCCCCAACCCAAATGGTGACTtg       >  1:738536/1‑140 (MQ=255)
                                                                                                                              tACGCCAGTGCAGCTCAATCTGGAAAATGGTAAACGCTACAGCCAGACCGGCACGCTGAAATTCTCCGACCCGACAGTGGATGAAACCACGGGCTCCGTGACGTTACGGGCGATTTTCCCCAACCCAAATGGTGACTtgc      >  2:661359/1‑140 (MQ=255)
                                                                                                                                 gCCAGTGCAGCTCAATCTGGAAAATGGTAAACGCTACAGCCAGACCGGCACGCTGAAATTCTCCGACCCGACAGTGGATGAAACCACGGGCTCCGTGACGTTACGGGCGATTTTCCCCAACCCAAATGGTGACTtgctgc   <  1:36753/140‑1 (MQ=255)
                                                                                                                                  ccAGTGCAGCTCAATCTGGAAAATGGTAAACGCTACAGCCAGACCGGCACGCTGAAATTCTCCGACCCGACAGTGGATGAAACCACGGGCTCCGTGACGTTACGGGCGATTTTCCCCAACCCAAATGGTGACTTGCTGcc  <  2:1126063/140‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                      
GGCAGATTCGCTGGTTACCGTACAACGTCTGGACCCGATTTATGTCGATCTCACGCAGTCGGTGCAAGATTTCTTACGCATGAAAGAAGAGGTCGCCAGTGGGCAAATCAAACAGGTTCAGGGCAGTACGCCAGTACAGCTCAATCTGGAAAATGGTAAACGCTACAGCCAGACCGGCACGCTGAAATTCTCCGACCCGACAGTGGATGAAACCACGGGCTCCGTGACGTTACGGGCGATTTTCCCCAACCCAAATGGTGACTTGCTGCC  >  NC_000913/3659816‑3660085

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A