Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A10 F28 I1 R1 116 72.9 2471836 99.3% 2454533 138.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,718,375 A→G F224L (TTT→CTT)  yiaF ← DUF3053 domain‑containing protein YiaF

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,718,3750AG100.0% 294.6 / NA 80F224L (TTT→CTT) yiaFDUF3053 domain‑containing protein YiaF
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (37/43);  total (37/43)

AAGGTTGAGAAGAACTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAACGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCTGTGAAGTCGGGAACTGGATGCCATTTGCGACAAAGCTCACCTGAGTACCTTGCTGAGCAATGTAGTCTCCAACCATCA  >  NC_000913/3718243‑3718509
                                                                                                                                    |                                                                                                                                      
aaGGTTGAGAAGAACTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAGCGCCTGa                                                                                                                                 >  2:1157691/1‑140 (MQ=255)
  ggTTGAGAAGAACTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAGCGCCTGATg                                                                                                                               >  2:990786/1‑140 (MQ=255)
  ggTTGAGAAGAACTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAGCGCCTGATg                                                                                                                               <  1:379689/140‑1 (MQ=255)
  ggTTGAGAAGAACTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAGCGCCTGATg                                                                                                                               <  2:345910/140‑1 (MQ=255)
    ttGAGAAGAACTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAGCGCCTGATGCt                                                                                                                             <  2:1106536/140‑1 (MQ=255)
     tGAGAAGAACTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAGCGCCTGATGCtg                                                                                                                            >  2:49795/1‑140 (MQ=255)
             aCTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAGCGCCTGATGCTGTGCCGGTa                                                                                                                    <  2:141149/140‑1 (MQ=255)
             aCTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAGCGCCTGATGCTGTGCCGGTa                                                                                                                    <  1:1157691/140‑1 (MQ=255)
                 tgtgAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAGCGCCTGATGCTGTGCCGGTAATgg                                                                                                                >  2:1079746/1‑140 (MQ=255)
                    gAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAGCGCCTGATGCTGTGCCGGTAATGgcgc                                                                                                             <  2:329082/140‑1 (MQ=255)
                    gAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAGCGCCTGATGCTGTGCCGGTAATGgcgc                                                                                                             <  1:123554/140‑1 (MQ=255)
                     aaTCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAGCGCCTGATGCTGTGCCGGTAATGGCGCa                                                                                                            <  2:750849/140‑1 (MQ=255)
                           cACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAGCGCCTGATGCTGTGCTGGTAATGGCGCAATCAGt                                                                                                      <  1:840086/140‑1 (MQ=255)
                           cACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAAt                                                                                                          >  2:516545/1‑136 (MQ=255)
                           cACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAAt                                                                                                          <  1:516545/136‑1 (MQ=255)
                           cACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAATCAGt                                                                                                      <  2:641247/140‑1 (MQ=255)
                           cACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAATCAGt                                                                                                      <  1:1079746/140‑1 (MQ=255)
                             cGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAATCAGttt                                                                                                    <  1:1165318/140‑1 (MQ=255)
                                cgcgGACTAAGCCGCGACTGCGTAGAGTAAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAATCAGt                                                                                                      <  2:441219/135‑1 (MQ=255)
                                cgcgGACTAAGCCGCGACTGCGTAGAGTAAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAATCAGt                                                                                                      >  1:441219/1‑135 (MQ=255)
                                  cgGACTAAGCCGCGACTGCGTAGAGTAAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTtat                                                                                               <  2:714227/140‑1 (MQ=255)
                                            cgcgACTGCGTAGAGTAAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGc                                                                                     <  2:263238/140‑1 (MQ=255)
                                              cgACTGCGTAGAGTAAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCct                                                                                   >  1:719928/1‑140 (MQ=255)
                                               gACTGCGTAGAGTAAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCctg                                                                                  >  2:1209545/1‑140 (MQ=255)
                                               gACTGCGTAGAGTAAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCctg                                                                                  >  2:679029/1‑140 (MQ=255)
                                                    cGTAGAGTAAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCtgtg                                                                             <  2:719928/140‑1 (MQ=255)
                                                       agagTAAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCTGTGAAg                                                                          >  2:995849/1‑140 (MQ=255)
                                                           tAAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCTGTGAAGTCgg                                                                      <  1:49795/140‑1 (MQ=255)
                                                              aGCCCGATAATCGCTCGGGCTTTTACTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCTGTGAAGTCGGGaa                                                                   >  1:499787/1‑140 (MQ=255)
                                                                   gATAATCGCTCGGGCTTTTACTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCTGTGAAGTCGGGaa                                                                   >  1:1010194/1‑135 (MQ=255)
                                                                   gATAATCGCTCGGGCTTTTACTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCTGTGAAGTCGGGaa                                                                   <  2:1010194/135‑1 (MQ=255)
                                                                   gATAATCGCTCGGGCTTTTACTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCTGTGAAGTCGGGAACTGGa                                                              >  1:135842/1‑140 (MQ=255)
                                                                    aTAATCGCTCGGGCTTTTACTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCTGTGAAGTCGGGAACTGGAt                                                             >  2:1105776/1‑140 (MQ=255)
                                                                     tAATCGCTCGGGCTTTTACTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCTGTGAAGTCGGGAACTGGATg                                                            >  1:664188/1‑140 (MQ=255)
                                                                               ggCTTTTACTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCTGTGAAGTCGGGAACTGGATGCCATTTGCGa                                                  <  1:1105776/140‑1 (MQ=255)
                                                                                 cTTTTACTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCTGTGAAGTCGGGAACTGGATGCCATTTGCGACa                                                <  1:995849/140‑1 (MQ=255)
                                                                                 cTTTTACTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCTGTGAAGTCGGGAACTGGATGCCATTTGCGACa                                                <  1:1072871/140‑1 (MQ=255)
                                                                                 cTTTTACTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCTGTGAAGTCGGGAACTGGATGCCATTTGCGACa                                                <  2:173615/140‑1 (MQ=255)
                                                                                   tttACTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCTGTGAAGTCGGGAACTGGATGCCATTTGCGACaaa                                              >  1:1150277/1‑140 (MQ=255)
                                                                                    tgtcgctTTATTGCGTTGCAATACAAGCTGTAGTCCAGGCCTGATGAACCGGCTGATGATGAGCCGGTGAGGGCGCAATCAGTGTGTTATATTCACTTGCCTGCTGTGAAGTCGGGAGCTGGATGGAATGTGCGAAAAAg                                             <  2:820858/135‑1 (MQ=255)
                                                                                      aCTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCTGTGAAGTCGGGAACTGGATGCCATTTGCGACAAAGCt                                           <  1:885439/140‑1 (MQ=255)
                                                                                      aCTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCTGTGAAGTCGGGAACTGGATGCCATTTGCGACAAAGCt                                           <  1:1036393/140‑1 (MQ=255)
                                                                                       ctctTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCTGTGAAGTCGGGAACTGGATGCCATTTGCGACAAAGCTc                                          <  2:499787/140‑1 (MQ=255)
                                                                                          tttATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCTGTGAAGTCGGGAACTGGATGCCATTTGCGACAAAGCTCa                                         >  2:120903/1‑138 (MQ=255)
                                                                                          tttATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCTGTGAAGTCGGGAACTGGATGCCATTTGCGACAAAGCTCa                                         <  1:120903/138‑1 (MQ=255)
                                                                                          tttATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCTGTGAAGTCGGGAACTGGATGCCATTTGCGACAAAGCTCAcc                                       >  2:797937/1‑140 (MQ=255)
                                                                                          tttATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCTGTGAAGTCGGGAACTGGATGCCATTTGCGACAAAGCTCAcc                                       >  2:307257/1‑140 (MQ=255)
                                                                                          ttaaTTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCTGTGAAGTCGGGAACTGGATGCCATTTGCGACAAAGCTCAcc                                       >  2:1211799/4‑140 (MQ=255)
                                                                                           ttATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCTGTGAAGTCGGGAACTGGATGCCATTTGCGACAAAGCTCACCt                                      <  2:135842/140‑1 (MQ=255)
                                                                                                 ggTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCTGTGAAGTCGGGAACTGGATGCCATTTGCGACAAAGCt                                           >  1:663964/1‑129 (MQ=255)
                                                                                                 ggTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCTGTGAAGTCGGGAACTGGATGCCATTTGCGACAAAGCt                                           <  2:663964/129‑1 (MQ=255)
                                                                                                 ggTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCTGTGAAGTCGGGAACTGGATGCCATTTGCGACAAAGCTCACCTGAGTAc                                >  2:382914/1‑140 (MQ=255)
                                                                                                 ggTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCTGTGAAGTCGGGAACTGGATGCCATTTGCGACAAAGCTCACCTGAGTAc                                >  2:1052340/1‑140 (MQ=255)
                                                                                                  gTTGCAGTAACTGCTGTAGTCCAGGGCTGATTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCCCTTGCCTGCTGTGAAGTCTGGAACTGGATGCCATTTGAGACAAAGCACACCTGAGTGcc                               <  2:940915/140‑1 (MQ=255)
                                                                                                  gTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCTGTGAAGTCGGGAACTGGATGCCATTTGCGACAAAGCTCACCt                                      >  1:676933/1‑133 (MQ=255)
                                                                                                  gTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCTGTGAAGTCGGGAACTGGATGCCATTTGCGACAAAGCTCACCt                                      <  2:676933/133‑1 (MQ=255)
                                                                                                    tGCAGTAACTGCTGTAGTCCAGGCCTGATTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCTGTGAAGTCGGGAACTGGATGCCATTTGCGACAAAGCTCACCTGAGTACCtt                             >  2:1028440/1‑140 (MQ=255)
                                                                                                    tGCAGTAACTGCTGTAGTCCAGGCCTGATTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCTGTGAAGTCGGGAACTGGATGCCATTTGCGACAAAGCTCACCTGAGTACCtt                             >  1:1222621/1‑140 (MQ=255)
                                                                                                     gCAGTAACTGCTGTAGTCCAGGCCTGATTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCTGTGAAGTCGGGAACTGGATGCCATTTGCGACAAAGCTCACCTGAGTACCTTg                            <  1:307257/140‑1 (MQ=255)
                                                                                                     gCAGTAACTGCTGTAGTCCAGGCCTGATTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCTGTGAAGTCGGGAACTGGATGCCATTTGCGACAAAGCTCACCTGAGTACCTTg                            <  1:797937/140‑1 (MQ=255)
                                                                                                      cAGTAACTGCTGTAGTCCAGGCCTGATTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCTGTGAAGTCGGGAACTGGATGCCATTTGCGACAAAGCt                                           >  1:556604/1‑124 (MQ=255)
                                                                                                      cAGTAACTGCTGTAGTCCAGGCCTGATTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCTGTGAAGTCGGGAACTGGATGCCATTTGCGACAAAGCt                                           <  2:556604/124‑1 (MQ=255)
                                                                                                      cAGTAACTGCTGTAGTCCAGGCCTGATTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCTGTGAAGTCGGGAACTGGATGCCATTTGCGACAAAGCTCACCTGAGTACCTTGc                           >  1:584924/1‑140 (MQ=255)
                                                                                                      cAGTAACTGCTGTAGTCCAGGCCTGATTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCTGTGAAGTCGGGAACTGGATGCCATTTGCGACAAAGCTCACCTGAGTACCTTGc                           >  2:517691/1‑140 (MQ=255)
                                                                                                        gTAACTGCTGTAGTCCAGGCCTGATTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCTGTGAAGTCGGGAACTGGATGCCATTTGCGACAAAGCTCACCTGAGTACCTTGCTg                         >  2:39920/1‑140 (MQ=255)
                                                                                                          aaCTGCTGTAGTCCAGGCCTGATTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCTGTGAAGTCGGGAACTGGATGCCATTTGCGACAAAGCTCACCTGAGTACCTTGCTGAg                       <  2:1150277/140‑1 (MQ=255)
                                                                                                           aCTGCTGTAGTCCAGGCCTGATTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCTGTGAAGTCGGGAACTGGATGCCATTTGCGACAAAGCTCACCTGAGTACCTTGCTGAGc                      <  2:584924/140‑1 (MQ=255)
                                                                                                               ctgTAGTCCAGGCCTGATTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCTGTGAAGTCGGGAACTGGATGCCATTTGCGACAAAGCTCACCTGAGTACCTTGCTGAGCAATg                  <  2:1222621/140‑1 (MQ=255)
                                                                                                                tgTAGTCCAGGCCTGATTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCTGTGAAGTCGGGAACTGGATGCCATTTGCGACAAAGCTCACCTGAGTACCTTGCTGAGCAATGt                 <  2:664188/140‑1 (MQ=255)
                                                                                                                 gTAGTCCAGGCCTGATTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCTGTGAAGTCGGGAACTGGATGCCATTTGCGACAAAGCTCACCTGAGTACCTTGCTGAGCAATGTa                <  1:511996/140‑1 (MQ=255)
                                                                                                                 gTAGTCCAGGCCTGATTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCTGTGAAGTCGGGAACTGGATGCCATTTGCGACAAAGCTCACCTGAGTACCTTGCTGAGCAATGTa                <  1:1052340/140‑1 (MQ=255)
                                                                                                                      ccAGGCCTGATTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCTGTGAAGTCGGGAACTGGATGCCATTTGCGACAAAGCTCACCTGAGTACCTTGCTGAGCAATGTAGtctc           <  1:1209545/140‑1 (MQ=255)
                                                                                                                      ccAGGCCTGATTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCTGTGAAGTCGGGAACTGGATGCCATTTGCGACAAAGCTCACCTGAGTACCTTGCTGAGCAATGTAGtctc           <  1:382914/140‑1 (MQ=255)
                                                                                                                         ggCCTGATTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCTGTGAAGTCGGGAACTGGATGCCATTTGCGACAAAGCTCACCTGAGTACCTTGCTGAGCAATGTAGTCTCCaa        >  1:137879/1‑140 (MQ=255)
                                                                                                                          gCCTGATTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCTGTGAAGTCGGGAACTGGATGCCATTTGCGACAAAGCTCACCTGAGTACCTTGCTGAGCAATGTAGTCTCCAAc       >  1:928036/1‑140 (MQ=255)
                                                                                                                            cTGATTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCTGTGAAGTCGGGAACTGGATGCCATTTGCGACAAAGCTCACCTGAGTACCTTGCTGAGCAATGTAGTCTCCAACCa     <  1:1211799/140‑1 (MQ=255)
                                                                                                                            cTGATTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCTGTGAAGTCGGGAACTGGATGCCATTTGCGACAAAGCTCACCTGAGTACCTTGCTGAGCAATGTAGTCTCCAACCa     <  1:679029/140‑1 (MQ=255)
                                                                                                                               aTTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCTGTGAAGTCGGGAACTGGATGCCATTTGCGACAAAGCTCACCTGAGTACCTTGCTGAGCAATGTAGTCTCCAACCATCa  >  2:53811/1‑140 (MQ=255)
                                                                                                                               aTTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCTGTGAAGTCGGGAACTGGATGCCATTTGCGACAAAGCTCACCTGAGTACCTTGCTGAGCAATGTAGTCTCCAACCATCa  >  2:440678/1‑140 (MQ=255)
                                                                                                                               aTTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCTGTGAAGTCGGGAACTGGATGCCATTTGCGACAAAGCTCACCTGAGTACCTTGCTGAGCAATGTAGTCTCCAACCATCa  >  2:265195/1‑140 (MQ=255)
                                                                                                                               aTTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCTGTGAAGTCGGGAACTGGATGCCATTTGCGACAAAGCTCACCTGAGTACCTTGCTGAGCAATGTAGTCTCCAACCATCa  >  2:181306/1‑140 (MQ=255)
                                                                                                                               aTTAAGCGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCTGTGAAGTCGGGAACTGGATGCCATTTGCGACAAAGCTCACCTGAGTACCTTGCTGAGCAATGTAGTCTCCAACCATCa  >  1:84889/1‑140 (MQ=255)
                                                                                                                                    |                                                                                                                                      
AAGGTTGAGAAGAACTGTGTGAATCCGCACGTCGCGGACTAAGCCGCGACTGCGTAGAGTAAAGCCCGATAATCGCTCGGGCTTTTACTCTTTATTGGGTTGCAGTAACTGCTGTAGTCCAGGCCTGATTAAACGCCTGATGCTGTGCCGGTAATGGCGCAATCAGTTTGTTATATTCACTTGCCTGCTGTGAAGTCGGGAACTGGATGCCATTTGCGACAAAGCTCACCTGAGTACCTTGCTGAGCAATGTAGTCTCCAACCATCA  >  NC_000913/3718243‑3718509

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A