Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A5 F28 I1 R1	162	86.7	2935410	99.3%	2914862	138.3

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,229,143	T→C	Y86H (TAC→CAC)	ygjK →	glycoside hydrolase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,229,143	0	T	C	100.0%	245.2 / NA	71	Y86H (TAC→CAC)	ygjK	glycoside hydrolase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (36/35); total (36/35)

ATGAAGGATTACGATTACGACGATCACCAGCGTTTTAATCCGTTTTTCGATCTCGGAGCCTGGCATGGTCATCTGTTGCCAGACGGCCCTAACACCATGGGCGGCTTTCCGGGCGTTGCGCTGCTGACGGAAGAGTACATCAACTTTATGGCCAGCAATTTCGACCGCCTGACCGTCTGGCAGGACGGCAAGAAAGTCGACTTTACGCTGGAGGCATACAGTATTCCCGGTGCGCTGGTGCAAAAACTGACAGCAAAAGATGTGCAAGT  >  NC_000913/3229008‑3229276

aTGAAGGATTACGATTACGACGATCACCAGCGTTTTAATCCGTTTTTCGATCTCGGAGCCTGGCATGGTCATCTGTTGCCAGACGGCCCTAACACCATGGGCGGCTTTCCGGGCGTTGCGCTGCTGACGGAAGAGCACAt                                                                                                                                   <  2:887731/140‑1 (MQ=255)

  gAAGGATTACGATTACGACGATCACCAGCGTTTTAATCCGTTTTTCGATCTCGGAGCCTGGCATGGTCATCTGTTGCCAGACGGCCCTAACACCATGGGCGGCTTTCCGGGCGTTGCGCTGCTGACGGAAGAGCACATCa                                                                                                                                 >  1:130769/1‑140 (MQ=255)

  gAAGGATTACGATTACGACGATCACCAGCGTTTTAATCCGTTTTTCGATCTCGGAGCCTGGCATGGTCATCTGTTGCCAGACGGCCCTAACACCATGGGCGGCTTTCCGGGCGTTGCGCTGCTGACGGAAGAGCACATCa                                                                                                                                 >  1:79457/1‑140 (MQ=255)

  gAAGGATTACGATTACGACGATCACCAGCGTTTTAATCCGTTTTTCGATCTCGGAGCCTGGCATGGTCATCTGTTGCCAGACGGCCCTAACACCATGGGCGGCTTTCCGGGCGTTGCGCTGCTGACGGAAGAGCACATCa                                                                                                                                 <  1:442906/140‑1 (MQ=255)

  gAAGGATTACGATTACGACGATCACCAGCGTTTTAATCCGTTTTTCGATCTCGGAGCCTGGCATGGTCATCTGTTGCCAGACGGCCCTAACACCATGGGCGGCTTTCCGGGCGTTGCGCTGCTGACGGAAGAGCACATCa                                                                                                                                 <  2:2444/140‑1 (MQ=255)

       attacgattacgACGATCACCAGCGTTTTAATCCGTTTTTCGATCTCGGAGCCTGGCATGGTCATCTGTTGCCAGACGGCCCTAACACCATGGGCGGCTTTCCGGGCGTTGCGCTGCTGACGGAAGAGCACATCAACttt                                                                                                                            <  2:985582/140‑1 (MQ=255)

       attacgattacgACGATCACCAGCGTTTTAATCCGTTTTTCGATCTCGGAGCCTGGCATGGTCATCTGTTGCCAGACGGCCCTAACACCATGGGCGGCTTTCCGGGCGTTGCGCTGCTGACGGAAGAGCACATCAACttt                                                                                                                            >  2:944546/1‑140 (MQ=255)

         tacgattacgaCGATCACCAGCGTTTTAATCCGTTTTTCGATCTCGGAGCCTGGCATGGTCATCTGTTGCCAGACGGCCCTAACACCATGGGCGGCTTTCCGGGCGTTGCGCTGCTGACGGAAGAGCACATCAACTTTAt                                                                                                                          >  1:1383564/1‑140 (MQ=255)

         tacgattacgaCGATCACCAGCGTTTTAATCCGTTTTTCGATCTCGGAGCCTGGCATGGTCATCTGTTGCCAGACGGCCCTAACACCATGGGCGGCTTTCCGGGCGTTGCGCTGCTGACGGAAGAGCACATCAACTTTAt                                                                                                                          >  2:263766/1‑140 (MQ=255)

                acgacgATCACCAGCGTTTTAATCCGTTTTTCGATCTCGGAGCCTGGCATGGTCATCTGTTGCCAGACGGCCCTAACACCATGGGCGGCTTTCCGGGCGTTGCGCTGCTGACGGAAGAGCACATCAACTTTATGGCCAg                                                                                                                    >  2:219253/1‑139 (MQ=255)

                acgacgATCACCAGCGTTTTAATCCGTTTTTCGATCTCGGAGCCTGGCATGGTCATCTGTTGCCAGACGGCCCTAACACCATGGGCGGCTTTCCGGGCGTTGCGCTGCTGACGGAAGAGCACATCAACTTTATGGCCAg                                                                                                                    <  1:219253/139‑1 (MQ=255)

                      aTCACCAGCGTTTTAATCCGTTTTTCGATCTCGGAGCCTGGCATGGTCATCTGTTGCCAGACGGCCCTAACACCATGGGCGGCTTTCCGGGCGTTGCGCTGCTGACGGAAGAGCACATCAACTTTATGGCCAGCAATTTc                                                                                                             >  2:768989/1‑140 (MQ=255)

                      aTCACCAGCGTTTTAATCCGTTTTTCGATCTCGGAGCCTGGCATGGTCATCTGTTGCCAGACGGCCCTAACACCATGGGCGGCTTTCCGGGCGTTGCGCTGCTGACGGAAGAGCACATCAACTTTATGGCCAGCAATTTc                                                                                                             >  2:10982/1‑140 (MQ=255)

                      aTCACCAGCGTTTTAATCCGTTTTTCGATCTCGGAGCCTGGCATGGTCATCTGTTGCCAGACGGCCCTAACACCATGGGCGGCTTTCCGGGCGTTGCGCTGCTGACGGAAGAGCACATCAACTTTATGGCCAGCAATTTc                                                                                                             >  2:783721/1‑140 (MQ=255)

                       tCACCAGCGTTTTAATCCGTTTTTCGATCTCGGAGCCTGGCATGGTCATCTGTTGCCAGACGGCCCTAACACCATGGGCGGCTTTCCGGGCGTTGCGCTGCTGACGGAAGAGCACATCAACTTTATGGCCAGCAATTTCg                                                                                                            >  1:813836/1‑140 (MQ=255)

                              cGTTTTAATCCGTTTTTCGATCTCGGAGCCTGGCATGGTCATCTGTTGCCAGACGGCCCTAACACCATGGGCGGCTTTCCGGGCGTTGCGCTGCTGACGGAAGAGCACATCAACTTTATGGCCAGCAATTTCGACCGCCt                                                                                                     <  1:768989/140‑1 (MQ=255)

                               gTTTTAATCCGTTTTTCGATCTCGGAGCCTGGCATGGTCATCTGTTGCCAGACGGCCCTAACACCATGGGCGGCTTTCCGGGCGTTGCGCTGCTGACGGAAGAGCACATCAACTTTATGGCCAGCAATTTCGACCGCCTg                                                                                                    >  1:186365/1‑140 (MQ=255)

                                 tttAATCCGTTTTTCGATCTCGGAGCCTGGCATGGTCATCTGTTGCCAGACGGCCCTAACACCATGGGCGGCTTTCCGGGCGTTGCGCTGCTGACGGAAGAGCACATCAACTTTATGGCCAGCAATTTCGACCGCCTGAc                                                                                                  <  1:944546/140‑1 (MQ=255)

                                   tAATCCGTTTTTCGATCTCGGAGCCTGGCATGGTCATCTGTTGCCAGACGGCCCTAACACCATGGGCGGCTTTCCGGGCGTTGCGCTGCTGACGGAAGAGCACATCAACTTTATGGCCAGCAATTTCGACCGCCTGACCg                                                                                                <  2:1383564/140‑1 (MQ=255)

                                     aTCCGTTTTTCGATCTCGGAGCCTGGCATGGTCATCTGTTGCCAGACGGCCCTAACACCATGGGTGGCTTTCCGGGCGTTGCGCTGCTGACGGAAGAGCACATCAACTTTATGGCCAGCAATTTCGACCGCCTGACCGTc                                                                                              >  2:502374/1‑140 (MQ=255)

                                     aTCCGTTTTTCGATCTCGGAGCCTGGCATGGTCATCTGTTGCCAGACGGCCCTAACACCATGGGCGGCTTTCCGGGCGTTGCGCTGCTGACGGAAGAGCACATCAACTTTATGGCCAGCAATTTCGACCGCCTGACCGTc                                                                                              >  1:935232/1‑140 (MQ=255)

                                        cGTTTTTCGATCTCGGAGCCTGGCATGGTCATCTGTTGCCAGACGGCCCTAACACCATGGGCGGCTTTCCGGGCGTTGCGCTGCTGACGGAAGAGCACATCAACTTTATGGCCAGCAATTTCGACCGCCTGACCGTCTgg                                                                                           >  2:18811/1‑140 (MQ=255)

                                         gTTTTTCGATCTCGGAGCCTGGCATGGTCATCTGTTGCCAGACGGCCCTAACACCATGGGCGGCTTTCCGGGCGTTGCGCTGCTGACGGAAGAGCACATCAACTTTATGGCCAGCAATTTCGACCGCCTGACCGTCTGGc                                                                                          <  2:117859/140‑1 (MQ=255)

                                                    tcGGAGCCTGGCATGGTCATCTGTTGCCAGACGGCCCTAACACCATGGGCGGCTTTCCGGGCGTTGCGCTGCTGACGGAAGAGCACATCAACTTTATGGCCAGCAATTTCGACCGCCTGACCGTCTGGCAGGACGGCAAg                                                                               <  2:130769/140‑1 (MQ=255)

                                                         gCCTGGCATGGTCATCTGTTGCCAGACGGCCCTAACACCATGGGCGGCTTTCCGGGCGTTGCGCTGCTGACGGAAGAGCACATCAACTTTATGGCCAGCAATTTCGACCGCCTGACCGTCTGGCAGGACGGCAAGAAAGt                                                                          <  1:10982/140‑1 (MQ=255)

                                                         gCCTGGCATGGTCATCTGTTGCCAGACGGCCCTAACACCATGGGCGGCTTTCCGGGCGTTGCGCTGCTGACGGAAGAGCACATCAACTTTATGGCCAGCAATTTCGACCGCCTGACCGTCTGGCAGGACGGCAAGAAAGt                                                                          <  2:186365/140‑1 (MQ=255)

                                                              gCATGGTCATCTGTTGCCAGACGGCCCTAACACCATGGGCGGCTTTCCGGGCGTTGCGCTGCTGACGGAAGAGCACATCAACTTTATGGCCAGCAATTTCGACCGCCTGACCGTCTGGCAGGACGGCAAg                                                                               >  2:983118/1‑130 (MQ=255)

                                                              gCATGGTCATCTGTTGCCAGACGGCCCTAACACCATGGGCGGCTTTCCGGGCGTTGCGCTGCTGACGGAAGAGCACATCAACTTTATGGCCAGCAATTTCGACCGCCTGACCGTCTGGCAGGACGGCAAg                                                                               <  1:983118/130‑1 (MQ=255)

                                                                    tCATCTGTTGCCAGACGGCCCTAACACCATGGGCGGCTTTCCGGGCGTTGCGCTGCTGACGGAAGAGCACATCAACTTTATGGCCAGCAATTTCGACCGCCTGACCGTCTGGCAGGACGGCAAGAAAGTCGACTTTACGc                                                               <  1:18811/140‑1 (MQ=255)

                                                                    tCATCTGTTGCCAGACGGCCCTAACACCATGGGCGGCTTTCCGGGCGTTGCGCTGCTGACGGAAGAGCACATCAACTTTATGGCCAGCAATTTCGACCGCCTGACCGTCTGGCAGGACGGCAAGAAAGTCGACTTTACGc                                                               <  2:310193/140‑1 (MQ=255)

                                                                    tCATCTGTTGCCAGACGGCCCTAACACCATGGGCGGCTTTCCGGGCGTTGCGCTGCTGACGGAAGAGCACATCAACTTTATGGCCAGCAATTTCGACCGCCTGACCGTCTGGCAGGACGGCAAGAAAGTCGACTTTACGc                                                               <  2:1282792/140‑1 (MQ=255)

                                                                      aTCTGTTGCCAGACGGCCCTAACACCATGGGCGGCTTTCCGGGCGTTGCGCTGCTGACGGAAGAGCACATCAACTTTATGGCCAGCAATTTCGACCGCCTGACCGTCTGGCAGGACGGCAAGAAAGTCGACTTTACGCTg                                                             <  2:480842/140‑1 (MQ=255)

                                                                        cTGTTGCCAGACGGCCCTAACACCATGGGCGGCTTTCCGGGCGTTGCGCTGCTGACGGAAGAGCACATCAACTTTATGGCCAGCAATTTCGACCGCCTGACCGTCTGGCAGGACGGCAAGAAAGTCGACTTTACGCTGGa                                                           >  2:486280/1‑140 (MQ=255)

                                                                         tGTTGCCAGACGGCCCTAACACCATGGGCGGCTTTCCGGGCGTTGCGCTGCTGACGGAAGAGCACATCAACTTTATGGCCAGCAATTTCGACCGCCTGACCGTCTGGCAGGACGGCAAGAAAGTCGACTTTACGCTGGAg                                                          <  2:1187437/140‑1 (MQ=255)

                                                                         tGTTGCCAGACGGCCCTAACACCATGGGCGGCTTTCCGGGCGTTGCGCTGCTGACGGAAGAGCACATCAACTTTATGGCCAGCAATTTCGACCGCCTGACCGTCTGGCAGGACGGCAAGAAAGTCGACTTTACGCTGGAg                                                          <  1:1389064/140‑1 (MQ=255)

                                                                         tGTTGCCAGACGGCCCTAACACCATGGGCGGCTTTCCGGGCGTTGCGCTGCTGACGGAAGAGCACATCAACTTTATGGCCAGCAATTTCGACCGCCTGACCGTCTGGCAGGACGGCAAGAAAGTCGACTTTACCCTGGAg                                                          <  1:1052818/140‑1 (MQ=255)

                                                                         tGTTGCCAGACGGCCCTAACACCATGGGCGGCTTTCCGGGCGTTGCGCTGCTGACAGAAGAGCACATCAACTTTATGGCCAGCAATTTCGACCGCCTGACCGTCTGGCAGGACGGCAAGAAAGTCGACTTTACGCTGGAg                                                          <  2:1222098/140‑1 (MQ=255)

                                                                            tGCCAGACGGCCCTAACACCATGGGTGGCTTTCCGGGCGTTGCGCTGCTGACGGAAGAGCACATCAACTTTATGGCCAGCAATTTCGACCGCCTGACCGTCTGGCAGGACGGCAAGAAAGTCGACTTTACGCTGGAGGCa                                                       <  1:502374/140‑1 (MQ=255)

                                                                             gCCAGACGGCCCTAACACCATGGGCGGCTTTCCGGGCGTTGCGCTGCTGACGGAAGAGCACATCAACTTTATGGCCAGCAATTTCGACCGCCTGACCGTCTGGCAGGACGGCAAGAAAGTCGACTTTACGCTGGAGGCAt                                                      >  1:1139356/1‑140 (MQ=255)

                                                                              ccAGACGGCCCTAACACCATGGGCGGCTTTCCGGGCGTTGCGCTGCTGACGGAAGAGCACATCAACTTTATGGCCAGCAATTTCGACCGCCTGACCGTCTGGCAGGACGGCAAGAAAGTCGACTTTACGCTGGAGGCATa                                                     >  1:163692/1‑140 (MQ=255)

                                                                               cAGACGGCCCTAACACCATGGGCGGCTTTCCGGGCGTTGCGCTGCTGACGGAAGAGCACATCAACTTTATGGCCAGCAATTTCGACCGCCTGACCGTCTGGCAGGACGGCAAGAAAGTCGACTTTACGCTGGAGGCATAc                                                    <  2:163692/140‑1 (MQ=255)

                                                                                aGACGGCCCTAACACCATGGGCGGCTTTCCGGGCGTTGCGCTGCTGACGGAAGAGCACATCAACTTTATGGCCAGCAATTTCGACCGCCTGACCGTCTGGCAGGACGGCAAGAAAGTCGACTTTACGCTGGAGGCATACa                                                   >  2:951783/1‑140 (MQ=255)

                                                                                  aCGGCCCTAACACCATGGGCGGCTTTCCGGGCGTTGCGCTGCTGACGGAAGAGCACATCAACTTTATGGCCAGCAATTTCGACCGCCTGACCGTCTGGCAGGACGGCAAGAAAGTCGACTTTACGCTGGa                                                           <  1:233710/130‑1 (MQ=255)

                                                                                  aCGGCCCTAACACCATGGGCGGCTTTCCGGGCGTTGCGCTGCTGACGGAAGAGCACATCAACTTTATGGCCAGCAATTTCGACCGCCTGACCGTCTGGCAGGACGGCAAGAAAGTCGACTTTACGCTGGa                                                           >  2:233710/1‑130 (MQ=255)

                                                                                  aCGGCCCTAACACCATGGGCGGCTTTCCGGGCGTTGCGCTGCTGACGGAAGAGCACATCAACTTTATGGCCAGCAATTTCGACCGCCTGACCGTCTGGCAGGACGGCAAGAAAGTCGACTTTACGCTGGAGGCATACAGt                                                 >  2:849403/1‑140 (MQ=255)

                                                                                   cGGCCCTAACACCATGGGCGGCTTTCCGGGCGTTGCGCTGCTGACGGAAGAGCACATCAACTTTATGGCCAGCAATTTCGACCGCCTGACCGTCTGGCAGGACGGCAAGAAAGTCGACTTTACGCTGGAGGCATACAGTa                                                >  1:534434/1‑140 (MQ=255)

                                                                                       ccTAACACCATGGGCGGCTTTCCGGGCGTTGCGCTGCTGACGGAAGAGCACATCAACTTTATGGCCAGCAATTTCGACCGCCTGACCGTCTGGCAGGACGGCAAGAAAGTCGACTTTACGCTGGAGGCATACAGTATTcc                                            <  2:935232/140‑1 (MQ=255)

                                                                                           acacCATGGGCGGCTTTCCGGGCGTTGCGCTGCTGACGGAAGAGCACATCAACTTTATGGCCAGCAATTTCGACCGCCTGACCGTCTGGCAGGACGGCAAGAAAGTCGACTTTACGCTGGAGGCATACAGTATTCCCGGt                                        >  1:165615/1‑140 (MQ=255)

                                                                                              ccATGGGCGGCTTTCCGGGCGTTGCGCTGCTGACGGAAGAGCACATCAACTTTATGGCCAGCAATTTCGACCGCCTGACCGTCTGGCAGGACGGCAAGAAAGTCGACTTTACGCTGGAGGCATACAGTATTCCCGGTgcg                                     <  1:783721/140‑1 (MQ=255)

                                                                                                aTGGGCGGCTTTCCGGGCGTTGCGCTGCTGACGGAAGAGCACATCAACTTTATGGCCAGCAATTTCGACCGCCTGACCGTCTGGCAGGACGGCAAGAAAGTCGACTTTACGCTTGAGGCATACAGTATTCCCGGTGCGCt                                   >  2:168449/1‑140 (MQ=255)

                                                                                                aTGGGCGGCTTTCCGGGCGTTGCGCTGCTGACGGAAGAGCACATCAACTTTATGGCCAGCAATTTCGACCGCCTGACCGTCTGGCAGGACGGCAAGAAAGTCGACTTTACGCTGGAGGCATACAGTAt                                               >  2:1321905/1‑128 (MQ=255)

                                                                                                aTGGGCGGCTTTCCGGGCGTTGCGCTGCTGACGGAAGAGCACATCAACTTTATGGCCAGCAATTTCGACCGCCTGACCGTCTGGCAGGACGGCAAGAAAGTCGACTTTACGCTGGAGGCATACAGTAt                                               <  1:1321905/128‑1 (MQ=255)

                                                                                                aTGGGCGGCTTTCCGGGCGTTGCGCTGCTGACGGAAGAGCACATCAACTTTATGGCCAGCAATTTCGACCGCCTGACCGTCTGGCAGGACGGCAAGAAAGTCGACTTTACGCTGGAGGCATACAGTATTCCCGGTGCGCt                                   <  1:916245/140‑1 (MQ=255)

                                                                                                aTGGGCGGCTTTCCGGGCGTTGCGCTGCTGACGGAAGAGCACATCAACTTTATGGCCAGCAATTTCGACCGCCTGACCGTCTGGCAGGACGGCAAGAAAGTCGACTTTACGCTGGAGGCATACAGTATTCCCGGTGCGCt                                   >  1:600025/1‑140 (MQ=255)

                                                                                                aTGGGCGGCTTTCCGGGCGTTGCGCTGCTGACGGAAGAGCACATCAACTTTATGGCCAGCAATTTCGACCGCCTGACCGTCTGGCAGGACGGCAAGAAAGTCGACTTTACGCTGGAGGCATACAGTATTCCCGGTGCGCt                                   >  2:1408609/1‑140 (MQ=255)

                                                                                                aTGGGCGGCTTTCCGGGCGTTGCGCTGCTGACGGAAGAGCACATCAACTTTATGGCCAGCAATTTCGACCGCCTGACCGTCTGGCAGGACGGCAAGAAAGTCGACTTTACGCTGGAGGCATACAGTATTCCCGGTGCGCt                                   >  2:916245/1‑140 (MQ=255)

                                                                                                 tGGGCGGCTTTCCGGGCGTTGCGCTGCTGACGGAAGAGCACATCAACTTTATGGCCAGCAATTTCGACCGCCTGACCGTCTGGCAGGACGGCAAGAAAGTCGACTTTACGCTGGAGGCATACAGTATTCCCGGTGCGCTg                                  >  2:958575/1‑140 (MQ=255)

                                                                                                 tGGGCGGCTTTCCGGGCGTTGCGCTGCTGACGGAAGAGCACATCAACTTTATGGCCAGCAATTTCGACCGCCTGACCGTCTGGCAGGACGGCAAGAAAGTCGACTTTACGCTGGAGGCATACAGTATTCCCGGTGCGCTg                                  >  2:1357257/1‑140 (MQ=255)

                                                                                                 tGGGCGGCTTTCCGGGCGTTGCGCTGCTGACGGAAGAGCACATCAACTTTATGGCCAGCAATTTCGACCGCCTGACCGTCTGGCAGGACGGCAAGAAAGTCGACTTTACGCTGGAGGCATACAGTATTCCCGGTGCGCTg                                  >  2:1380924/1‑140 (MQ=255)

                                                                                                   ggcggcTTTCCGGGCGTTGCGCTGCTGACGGAAGAGCACATCAACTTTATGGCCAGCAATTTCGACCGCCTGACCGTCTGGCAGGGCGGCAAGAAAGTCGACTTTACGCTGGAGGCATACAGTATTCCCGGTGCGCTGGt                                >  2:166570/1‑140 (MQ=255)

                                                                                                    gcggcTTTCCGGGCGTTGCGCTGCTGACGGAAGAGCACATCAACTTTATGGCCAGCAATTTCGACCGCCTGACCGTCTGGCAGGACGGCAAGAAAGTCGACTTTACGCTGGAGGCATACAGTATTCCCGGTGCGCTGGTg                               >  2:552490/1‑140 (MQ=255)

                                                                                                            ccGGGCGTTGCGCTGCTGACGGAAGAGCACATCAACTTTATGGCCAGCAATTTCGACCGCCTGACCGTCTGGCAGGACGGCAAGAAAGTCGACTTTACGCTGGAGGCATACAGTATTCCCGGTGCGCTGGTGCAAAAACt                       <  1:951783/140‑1 (MQ=255)

                                                                                                             cGGGCGTTGCGCTGCTGACGGAAGAGCACATCAACTTTATGGCCAGCAATTTCGACCGCCTGACCGTCTGGCAGGACGGCAAGAAAGTCGACTTTACGCTGGAGGCATACAGTATTCCCGGTGCGCTGGTGCAAAAACTg                      <  1:1357257/140‑1 (MQ=255)

                                                                                                              gggCGTTGCGCTGCTGACGGAAGAGCACATCAACTTTATGGCCAGCAATTTCGACCGCCTGACCGTCTGGCAGGGCGGCAAGAAAGTCGACTTTACGCTGGAGGCATACAGTATTCCCGGTGCGCTGGTGCAAAAACTGa                     <  1:166570/140‑1 (MQ=255)

                                                                                                                  gTTGCGCTGCTGACGGAAGAGCACATCAACTTTATGGCCAGCAATTTCGACCGCCTGACCGTCTGGCAGGACGGCAAGAAAGTCGACTTTACGCTGGAGGCATACAGTATTCCCGGTGCGCTGGTGCAAAAACTGACAGc                 <  1:958575/140‑1 (MQ=255)

                                                                                                                    tGCGCTGCTGACGGAAGAGCACATCAACTTTATGGCCAGCAATTTCGACCGCCTGACCGTCTGGCAGGACGGCAAGAAAGTCGACTTTACGCTGGAGGCATACAGTATTCCCGGTGCGCTGGTGCAAAAACTGACAGCaa               >  1:828598/1‑140 (MQ=255)

                                                                                                                          gctgACGGAAGAGCACATCAACTTTATGGCCAGCAATTTCGACCGCCTGACCGTCTGGCAGGACGGCAAGAAAGTCGACTTTACGCTGGAGGCATACAGTATTCCCGGTGCGCTGGTGCAAAAACTGACAGCAAAAGAtg         >  1:771384/1‑140 (MQ=255)

                                                                                                                           ctgACGGAAGAGCACATCAACTTTATGGCCAGCAATTTCGACCGCCTGACCGTCTGGCAGGACGGCAAGAAAGTCGACTTTACGCTGGAGGCATACAGTATTCCCGGTGCGCTGGTGCAAAAACTGACAGCAAAAGAtgt        >  2:1382662/1‑140 (MQ=255)

                                                                                                                            tgACGGAAGAGCACATCAACTTTATGGCCAGCAATTTCGACCGCCTGACCGTCTGGCAGGACGGCAAGAAAGTCGACTTTACGCTGGAGGCATACAGTATTCCCGGTGCGCTGGTGCAAAAACTGACAGCAAAAGAtgtg       <  2:600025/140‑1 (MQ=255)

                                                                                                                              aCGGAAGAGCACATCAACTTTATGGCCAGCAATTTCGACCGCCTGACCGTCTGGCAGGACGGCAAGAAAGTCGACTTTACGCTGGAGGCATACAGTATTCCCGGTGCGCTGGTGCAAAAACTGACAGCAAAAGATGTGCa     >  2:493021/1‑140 (MQ=255)

                                                                                                                                 gAAGAGCACATCAACTTTATGGCCAGCAATTTCGACCGCCTGACCGTCTGGCAGGACGGCAAGAAAGTCGACTTTACGCTGGAGGCATACAGTATTCCCGGTGCGCTGGTGCAAAAACTGACAGCAAAAGATGTGCAAGt  <  2:828598/140‑1 (MQ=255)

                                                                                                                                 gAAGAGCACATCAACTTTATGGCCAGCAATTTCGACCGCCTGACCGTCTGGCAGGACGGCAAGAAAGTCGACTTTACGCTGGAGGCATACAGTATTCCCGGTGCGCTGGTGCAAAAACTGACAGCAAAAGATGTGCAAGt  <  2:534434/140‑1 (MQ=255)

ATGAAGGATTACGATTACGACGATCACCAGCGTTTTAATCCGTTTTTCGATCTCGGAGCCTGGCATGGTCATCTGTTGCCAGACGGCCCTAACACCATGGGCGGCTTTCCGGGCGTTGCGCTGCTGACGGAAGAGTACATCAACTTTATGGCCAGCAATTTCGACCGCCTGACCGTCTGGCAGGACGGCAAGAAAGTCGACTTTACGCTGGAGGCATACAGTATTCCCGGTGCGCTGGTGCAAAAACTGACAGCAAAAGATGTGCAAGT  >  NC_000913/3229008‑3229276

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A