Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F28 I1 R1 258 142.3 4824480 99.1% 4781059 138.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,001,304 (G)7→8 coding (960/2259 nt) xdhA → putative xanthine dehydrogenase molybdenum‑binding subunit XdhA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,001,2971.G100.0% 347.9 / NA 96A318G (GCG→GGG) xdhAputative xanthine dehydrogenase molybdenum‑binding subunit XdhA
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base G (52/44);  total (52/44)

Only 100 of 109 total aligned reads displayed.

CTCGCAACCCGTACCCGCCACGCTTTTACCATTGACGGGCAAATGGGCGTGAACCGCGACGGAACATTGAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGC‑‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATGCGTGGTTATGGCGCGCCACAAGTCGTATTTGCCGTTGAGT  >  NC_000913/3001158‑3001431
                                                                                                                                            |                                                                                                                                       
cccccaccccGTCCCCGCCACGCTTTTACCATTGACGGGCAAATGGGCGTGAACCGCGACGGAACATTGAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGc                                                                                                                                          <  2:888991/133‑1 (MQ=255)
  cGCAACCCGTACCCGCCACGCTTTTACCATTGACGGGCAAATGGGCGTGAACCGCGACGGAACATTGAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGC‑‑gg                                                                                                                                      <  1:1231316/140‑1 (MQ=255)
    cAACCCGTACCCGCCACGCTTTTACCATTGACGGGCAAATGGGCGTGAACCGCGACGGAACATTGAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGC‑‑gggg                                                                                                                                    >  2:855622/1‑140 (MQ=255)
     cccccGTCCCCGCCACGCTTTTACCATTGACGGGCAAATGGGCGTGAACCGCGACGGAACATTGAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGC‑‑ggggg                                                                                                                                   <  2:672386/138‑1 (MQ=255)
     cccccGTCCCCGCCACGCTTTTACCATTGACGGGCAAATGGGCGTGAACCGCGACGGAACATTGAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGC‑‑ggggg                                                                                                                                   <  2:617191/138‑1 (MQ=255)
     cccccGTCCCCGCCACGCTTTTACCATTGACGGGCAAATGGGCGTGAACCGCGACGCAACATTGAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGC‑‑ggggg                                                                                                                                   <  1:724884/138‑1 (MQ=255)
     aaCCCGTACCCGCCACGCTTTTACCATTGACGGGCAAATGGGCGTGAACCGCGACGGAACATTGAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGC‑‑ggggg                                                                                                                                   <  1:409651/140‑1 (MQ=255)
      aCCCGTACCCGCCACGCTTTTACCATTGACGGGCAAATGGGCGTGAACCGCGACGGAACATTGAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGC‑‑gggggg                                                                                                                                  >  1:1250378/1‑140 (MQ=255)
      aCCCGTACCCGCCACGCTTTTACCATTGACGGGCAAATGGGCGTGAACCGCGACGGAACATTGAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGC‑‑gggggg                                                                                                                                  >  1:1638789/1‑140 (MQ=255)
       cccGTACCCGCCACGCTTTTACCATTGACGGGCAAATGGGCGTGAACCGCGACGGAACATTGAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGC‑‑ggggggg                                                                                                                                 >  1:1902284/1‑140 (MQ=255)
                 ccACGCTTTTACCATTGACGGGCAAATGGGCGTGAACCGCGACGGAACATTGAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTc                                                                                                                        >  1:1746503/1‑140 (MQ=255)
                  cACGCTTTTACCATTGACGGGCAAATGGGCGTGAACCGCGACGGAACATTGAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCg                                                                                                                       <  1:67043/140‑1 (MQ=255)
                    cGCTTTTACCATTGACGGGCAAATGGGCGTGAACCCCGACGGAACATTGAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCt                                                                                                                     <  1:664035/140‑1 (MQ=255)
                     gCTTTTACCATTGACGGGCAAATGGGCGTGAACCGCGACGGAACATTGAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCtt                                                                                                                    >  1:131856/1‑140 (MQ=255)
                     gCTTTTACCATTGACGGGCAAATGGGCGTGAACCGCGACGGAACATTGAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCtt                                                                                                                    >  1:821594/1‑140 (MQ=255)
                        tttACCATTGACGGGCAAATGGGCGTGAACCGCGACGGAACATTGAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTAcc                                                                                                                 >  2:1966784/1‑140 (MQ=255)
                               ttGACGGGCAAATGGGCGTGAACCGCGACGGAACATTGAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATcc                                                                                                          >  2:827665/1‑140 (MQ=255)
                                tGACGGGCAAATGGGCGTGAACCGCGACGGAACATTGAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCt                                                                                                         >  2:1259218/1‑140 (MQ=255)
                                tGACGGGCAAATGGGCGTGAACCGCGACGGAACATTGAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCt                                                                                                         >  1:2058852/1‑140 (MQ=255)
                                   cGGGCAAATGGGCGTGAACCGCGACGGAACATTGAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGt                                                                                                      >  2:515897/1‑140 (MQ=255)
                                       cAAATGGGCGTGAACCGCGACGGAACATTGAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTtgtg                                                                                                  <  1:1600045/140‑1 (MQ=255)
                                        aaaTGGGCGTGAACCGCGACGGAACATTGAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCGGGGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTtgtg                                                                                                  <  1:276810/140‑1 (MQ=255)
                                         aaTGGGCGTGAACCGCGACGGAACATTGAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGcc                                                                                                >  2:1419063/1‑140 (MQ=255)
                                         aaTGGGCGTGAACCGCGACGGAACATTGAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGcc                                                                                                <  1:1419063/140‑1 (MQ=255)
                                         aaTGGGCGTGAACCGCGACGGAACATTGAAAGGTTATAGTCTGGATGT‑‑TGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCg                                                                                                       >  1:1219809/1‑131 (MQ=255)
                                         aaTGGGCGTGAACCGCGACGGAACATTGAAAGGTTATAGTCTGGATGT‑‑TGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCg                                                                                                       <  2:1219809/131‑1 (MQ=255)
                                                gTGAACCGCGACGGAACATTGAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCtt                                                                                         <  1:830635/140‑1 (MQ=255)
                                                 tGAACCGCGACGGAACATTGAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCGGGGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCtt                                                                                         >  2:796555/1‑140 (MQ=255)
                                                   aaCCGCGACGGAACATTGAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACa                                                                                      <  1:898385/140‑1 (MQ=255)
                                                   aaCCGCGACGGAACATTGAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACa                                                                                      <  1:331181/140‑1 (MQ=255)
                                                    aCCGCGACGGAACATTGAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAg                                                                                     >  2:262180/1‑140 (MQ=255)
                                                      cgcgACGGAACATTGAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGtt                                                                                   <  1:827665/140‑1 (MQ=255)
                                                           cGGAACATTGAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAg                                                                              >  1:2300888/1‑140 (MQ=255)
                                                           cGGAACATTGAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAg                                                                              <  2:1250378/140‑1 (MQ=255)
                                                            ggAACATTGAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGa                                                                             <  1:1668262/140‑1 (MQ=255)
                                                               aCATTGAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCt                                                                          <  1:1746117/140‑1 (MQ=255)
                                                                cATTGAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTg                                                                         <  2:69721/140‑1 (MQ=255)
                                                                    gAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCtat                                                                     >  1:1022673/1‑140 (MQ=255)
                                                                       aGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCa                                                                                 <  1:137750/125‑1 (MQ=255)
                                                                       aGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCa                                                                                 >  2:137750/1‑125 (MQ=255)
                                                                       aGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATAcc                                                                  >  2:1983138/1‑140 (MQ=255)
                                                                        ggTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCa                                                                 >  1:1514667/1‑140 (MQ=255)
                                                                        ggTTATAGTCTGGACGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCa                                                                 >  2:1355906/1‑140 (MQ=255)
                                                                          ttATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAAc                                                               >  2:1124746/1‑140 (MQ=255)
                                                                          ttATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAAc                                                               >  1:659118/1‑140 (MQ=255)
                                                                               gTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTccc                                                          <  2:1902284/140‑1 (MQ=255)
                                                                                 cTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCt                                                        <  2:2300888/140‑1 (MQ=255)
                                                                                  tGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTc                                                       >  2:1085969/1‑140 (MQ=255)
                                                                                   ggATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAAc                                                               >  2:2399998/1‑131 (MQ=255)
                                                                                   ggATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAAc                                                               <  1:2399998/131‑1 (MQ=255)
                                                                                    gATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCgg                                                     >  2:38115/1‑140 (MQ=255)
                                                                                    gATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCgg                                                     >  1:673324/1‑140 (MQ=255)
                                                                                    gATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCgg                                                     >  2:180006/1‑140 (MQ=255)
                                                                                    gATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCgg                                                     >  1:179494/1‑140 (MQ=255)
                                                                                        ttCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTgg                                                 >  2:2027353/1‑140 (MQ=255)
                                                                                         tCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGt                                                >  1:303587/1‑140 (MQ=255)
                                                                                          cTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGc                                                    >  2:2252282/1‑135 (MQ=255)
                                                                                          cTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGc                                                    <  1:2252282/135‑1 (MQ=255)
                                                                                          cTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTg                                               <  1:180006/140‑1 (MQ=255)
                                                                                            gTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCg                                             >  1:1977275/1‑140 (MQ=255)
                                                                                            gTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCg                                             >  1:1501319/1‑140 (MQ=255)
                                                                                               tAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATg                                          <  1:1966784/140‑1 (MQ=255)
                                                                                               tAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATg                                          <  1:1259218/140‑1 (MQ=255)
                                                                                                  cacCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATGCGt                                       >  2:819152/1‑140 (MQ=255)
                                                                                                       gcgcTTATGCATCTCACGGGCACTCCATCGCTTCTGCGGGGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATGCGTGGtt                                   >  2:2051309/1‑140 (MQ=255)
                                                                                                       gcgcTTATGCATCTCACGGGCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCg                                             >  1:1831144/1‑129 (MQ=255)
                                                                                                       gcgcTTATGCATCTCACGGGCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCg                                             <  2:1831144/129‑1 (MQ=255)
                                                                                                       gcgcTTATGCATCTCACGGGCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATGCGTGGTTa                                  >  2:316100/1‑140 (MQ=255)
                                                                                                       gcgcTTATGCATCTCACGGGCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATGCGTGGTTa                                  >  1:655813/1‑140 (MQ=255)
                                                                                                       gcgcTTATGCATCTCACGGGCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATGCGTGGTTa                                  >  1:2121450/1‑140 (MQ=255)
                                                                                                       gcgcTTATGCATCTCACGGGCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATGCGTGGTTa                                  >  1:1640812/1‑140 (MQ=255)
                                                                                                       gcgcTTATGCATCTCACGGGCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATGCGGGGTTa                                  >  1:229868/1‑140 (MQ=255)
                                                                                                          cTTATGCATCTCACGGGCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATGCGTGGTTATgg                               <  1:819152/140‑1 (MQ=255)
                                                                                                            tATGCATCTCACGGGCACTCCATCGCTTCTGCGGGGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATGCGTGGTTATGgc                              >  1:548543/1‑140 (MQ=255)
                                                                                                            tATGCATCTCACGGGCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATGCGTGGTTATGgcg                             <  2:1614258/140‑1 (MQ=255)
                                                                                                                 aTCTCACGGGCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATGCGTGGTTATGGCGCGCca                        <  2:673324/140‑1 (MQ=255)
                                                                                                                     cACGGGCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATGCGTGGTTATGGCGCGcc                         >  2:386116/1‑135 (MQ=255)
                                                                                                                     cACGGGCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATGCGTGGTTATGGCGCGcc                         <  1:386116/135‑1 (MQ=255)
                                                                                                                     cACGGGCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATGCGTGGTTATGGCGCGCCACAAg                    >  1:1065636/1‑140 (MQ=255)
                                                                                                                     cACGGGCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACACTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATGCGTGGTTATGGCGCGCCACAAg                    >  2:1138160/1‑140 (MQ=255)
                                                                                                                        gggCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATGCGTGGTTATGGCGCGCCACAAGTCg                 >  2:2208677/1‑140 (MQ=255)
                                                                                                                         ggCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATGCGTGG‑TATGGCGCGCCACAAGTCGTa               >  2:211094/1‑140 (MQ=255)
                                                                                                                          gCACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATGCGTGGTTATGGCGCGCCACAAGTCGTa               >  2:363055/1‑140 (MQ=255)
                                                                                                                           cACTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATGCGTGGTTATGGCGCGCCACAAGTCGTAt              >  2:1617292/1‑140 (MQ=255)
                                                                                                                             cTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATGCGTGGTTATGGCGCGCCACAAGTCGTAttt            >  2:457568/1‑140 (MQ=255)
                                                                                                                             cTCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATGCGTGGTTATGGCGCGCCACAAGTCGTAttt            >  1:515949/1‑140 (MQ=255)
                                                                                                                              tCCATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATGCGTGGTTATGGCGCGCCACAAGTCGTATTTg           >  1:2279687/1‑140 (MQ=255)
                                                                                                                               ccATCGCTTCTGCGGGGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATGCGTGGTTATGGCGCGCCACAAGTCGTATTTg           <  1:2051309/140‑1 (MQ=255)
                                                                                                                                cATCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATGCGTGGTTATGGCGCGCCACAAGTCGTATTTGcc         >  2:826409/1‑140 (MQ=255)
                                                                                                                                  tCGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATGCGTGGTTATGGCGCGCCACAAGTCGTATTTGCCGt       <  1:1617292/140‑1 (MQ=255)
                                                                                                                                   cGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATGCGTGGTTATGGCGCGCCACAAGTCGTATTTGCCGtt      <  1:262180/140‑1 (MQ=255)
                                                                                                                                   cGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATGCGTGGTTATGGCGCGCCACAAGTCGTATTTGCCGtt      <  1:1124746/140‑1 (MQ=255)
                                                                                                                                   cGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATGCGTGGTTATGGCGCGCCACAAGTCGTATTTGCCGtt      <  2:821594/140‑1 (MQ=255)
                                                                                                                                   cGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATGCGTGGTTATGGCGCGCCACAAGTCGTATTTGCCGtt      <  1:363055/140‑1 (MQ=255)
                                                                                                                                   cGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATGCGTGGTTATGGCGCGCCACAAGTCGTATTTGCCGtt      <  1:38115/140‑1 (MQ=255)
                                                                                                                                   cGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATGCGTGGTTATGGCGCGCCACAAGTCGTATTTGCCGtt      <  1:2104445/140‑1 (MQ=255)
                                                                                                                                   cGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATGCGTGGTTATGGCGCGCCACAAGTCGTATTTGCCGtt      <  1:1635664/140‑1 (MQ=255)
                                                                                                                                   cGCTTCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATGCGTGGTTATGGCGCGCCACAAGTCGTATTTGCCGtt      <  2:179494/140‑1 (MQ=255)
                                                                                                                                       tCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATGCGTGGTTATGGCGCGCCACAAGTCGTATTTGCCGTTGAGt  <  2:515949/140‑1 (MQ=255)
                                                                                                                                       tCTGCG‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATGCGTGGTTATGGCGCGCCACAAGTCGTATTTGCCGTTGAGt  <  2:2121450/140‑1 (MQ=255)
                                                                                                                                            |                                                                                                                                       
CTCGCAACCCGTACCCGCCACGCTTTTACCATTGACGGGCAAATGGGCGTGAACCGCGACGGAACATTGAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGC‑‑GGGGGGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATGCGTGGTTATGGCGCGCCACAAGTCGTATTTGCCGTTGAGT  >  NC_000913/3001158‑3001431

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A