Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F28 I1 R1
|
258 |
142.3 |
4824480 |
99.1% |
4781059 |
138.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,556,769 |
(T)9→10 |
coding (116/144 nt) |
ytiD → |
protein YtiD |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,556,760 | 1 | . | T | 95.2%
| 567.8
/ 15.3
| 168 | coding (107/144 nt) | ytiD | protein YtiD |
| Reads supporting (aligned to +/- strand): ref base . (1/7); new base T (74/86); total (75/93) |
| Fisher's exact test for biased strand distribution p-value = 7.63e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 |
Only 100 of 181 total aligned reads displayed.
TATTATTTACAAACTAATTGTTTCAAATAATACATGGCTGATTATGCGGAAATAAATAATTTCCCACCGGAATTAAGTAGCAGCGGTGACAAGTATTTTCATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GG‑‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGAAAAGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAAT > NC_000913/4556621‑4556894
|
tattatTTACAAACTAATTGTTTCAAATAATACATGGCTGATTATGCGGAAATAAATAATTTCCCACCGGAATTAAGTAGCAGCGGTGACAAGTATTTTCATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑gg > 1:1894384/1‑140 (MQ=255)
attTACAAACTAATTGTTTCAAATAATACATGGCTGATTATGCGGAAATAAATAATTTCCCACCGGAATTAAGTAGCAGCGGTGACAAGTATTTTCATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GG‑‑‑tttt > 2:1816408/1‑140 (MQ=255)
ttACAAACTAATTGTTTCAAATAATACATGGCTGATTATGCGGAAATAAATAATTTCCCACCGGAATTAAGTAGCAGCGGTGACAAGTATTTTCATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GG‑‑‑tttttt > 2:734745/1‑140 (MQ=255)
ttACAAACTAATTGTTTCAAATAATACATGGCTGATTATGCGGAAATAAATAATTTCCCACCGGAATTAAGTAGCAGCGGTGACAAGTATTTTCATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GG‑‑‑tttttt > 1:1443135/1‑140 (MQ=255)
tACAAACTAATTGTTTCAAATAATACATGGCTGATTATGCGGAAATAAATAATTTCCCACCGGAATTAAGTTGCAGCGGTGACAAGTATTTTCATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GG‑‑‑ttttttt > 2:1677033/1‑140 (MQ=255)
tACAAACTAATTGTTTCAAATAATACATGGCTGATTATGCGGAAATAAATAATTTCCCACCGGAATTAAGTAGCAGCGGTGACAAGTATTTTCATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GG‑‑‑ttttttt > 1:983321/1‑140 (MQ=255)
cAAACTAATTGTTTCAAATAATACATGGCTGATTATGCGGAAATAAATAATTTCCCACCGGAATTAAGTAGCAGCGGTGACAAGTATTTTCATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GG‑‑‑ttttttttt > 1:1498539/1‑140 (MQ=255)
aaTTGTTTCAAATAATACATGGCTGATTATGCGGAAATAAATAATTTCCCACCGGAATTAAGTAGCAGCGGTGACAAGTATTTTCATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGtt > 2:817825/1‑140 (MQ=255)
tCAAATAATACATGGCTGATTATGCGGAAATAAATAATTTCCCACCGGAATTAAGTAGCAGCGGTGACAAGTATTTTCATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTgatgat > 1:548193/1‑140 (MQ=255)
tCAAATAATACATGGCTGATTATGCGGAAATAAATAATTTCCCACCGGAATTAAGTAGCAGCGGTGACAAGTATTTTCATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTgatgat < 1:2066231/140‑1 (MQ=255)
tCAAATAATACATGGCTGATTATGCGGAAATAAATAATTTCCCACCGGAATTAAGTAGCAGCGGTGACAAGTATTTTCATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTgatgat > 1:1868031/1‑140 (MQ=255)
aaaTAATACATGGCTGATTATGCGGAAATAAATAATTTCCCACCGGAATTAAGTAGCAGCGGTGACAAGTATTTTCATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGAttt < 2:1090412/140‑1 (MQ=255)
tGGCTGATTATGCGGAAATAAATAATTTCCCACCGGAATTAAGTAGCAGCGGTGACAAGTATTTTCATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATc > 1:729316/1‑140 (MQ=255)
ggCTGATTATGCGGAAATAAATAATTTCCCACCGGAATTAAGTAGCAGCGGTGACAAGTATTTTCATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTAt > 1:1004496/1‑133 (MQ=255)
ggCTGATTATGCGGAAATAAATAATTTCCCACCGGAATTAAGTAGCAGCGGTGACAAGTATTTTCATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCa > 1:1662976/1‑140 (MQ=255)
ggCTGATTATGCGGAAATAAATAATTTCCCACCGGAATTAAGTAGCAGCGGTGACAAGTATTTTCATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCa > 1:1100996/1‑140 (MQ=255)
ggCTGATTATGCGGAAATAAATAATTTCCCACCGGAATTAAGTAGCAGCGGTGACAAGTATTTTCATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCa > 2:1926873/1‑140 (MQ=255)
ggCTGATTATGCGGAAATAAATAATTTCCCACCGGAATTAAGTAGCAGCGGTGACAAGTATTTTCATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCa > 1:2060205/1‑140 (MQ=255)
tGATTATGCGGAAATAAATAATTTCCCACCGGAATTAAGTAGCAGCGGTGACAAGTATTTTCATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGa > 2:2171920/1‑140 (MQ=255)
aTTATGCGGAAATAAATAATTTCCCACCGGAATTAAGTAGCAGCGGTGACAAGTATTTTCATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACt > 2:930904/1‑140 (MQ=255)
aTTATGCGGAAATAAATAATTTCCCACCGGAATTAAGTAGCAGCGGTGACAAGTATTTTCATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACt > 1:1962902/1‑140 (MQ=255)
aTTATGCGGAAATAAATAATTTCCCACCGGAATTAAGTAGCAGCGGTGACAAGTATTTTCATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACt > 1:2324792/1‑140 (MQ=255)
gCGGAAATAAATAATTTCCCACCGGAATTAAGTAGCAGCGGTGACAAGTATTTTCATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACtttttt > 2:1673062/1‑140 (MQ=255)
aaataaatAATTTCCCACCGGAATTAAGTAGCAGCGGTGACAAGTATTTTCATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GG‑‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGa < 2:1498539/140‑1 (MQ=255)
ataaataaTTTCCCACCGGAATTAAGTAGCAGCGGTGACAAGTATTTTCATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGaa < 1:1258840/140‑1 (MQ=255)
ataaataaTTTCCCACCGGAATTAAGTAGCAGCGGTGACAAGTATTTTCATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGaa < 1:134844/140‑1 (MQ=255)
taaataaTTTCCCACCGGAATTAAGTAGCAGCGGTGACAAGTATTTTCATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GGTTTTTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGa < 1:2210642/140‑1 (MQ=255)
aaataaTTTCCCACCGGAATTAAGTAGCAGCGGTGACAAGTATTTTCATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGaaaa < 2:1271834/140‑1 (MQ=255)
aaataaTTTCCCACCGGAATTAAGTAGCAGCGGTGACAAGTATTTTCATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGaaaa < 1:1641010/140‑1 (MQ=255)
aaataaTTTCCCACCGGAATTAAGTAGCAGCGGTGACAAGTATTTTCATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGaaaa < 1:1287550/140‑1 (MQ=255)
aaataaTTTCCCACCGGAATTAAGTAGCAGCGGTGACAAGTATTTTCATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGaaaa < 2:860185/140‑1 (MQ=255)
aataatTTCCCACCGGAATTAAGTAGCAGCGGTGACAAGTATTTTCATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GG‑‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGAAAAGt < 1:1208627/140‑1 (MQ=255)
ataatTTCCCACCGGAATTAAGTAGCAGCGGTGACAAGTATTTTCATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGAAAAGt < 2:1662976/140‑1 (MQ=255)
ataatTTCCCACCGGAATTAAGTAGCAGCGGTGACAAGTATTTTCATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGAAAAGt < 1:61484/140‑1 (MQ=255)
taatTTCCCACCGGAATTAAGTAGCAGCGGTGACAAGTATTTTCATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGAAAAGTc < 2:203825/140‑1 (MQ=255)
tttCCCACCGGAATTAAGTAGCAGCGGTGACAAGTATTTTCATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGaa > 1:1392778/1‑132 (MQ=255)
tttCCCACCGGAATTAAGTAGCAGCGGTGACAAGTATTTTCATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGaa < 2:1392778/132‑1 (MQ=255)
tttCCCACCGGAATTAAGTAGCAGCGGTGACAAGTATTTTCATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGAAAAGTCAGt > 1:259013/1‑140 (MQ=255)
tttCCCACCGGAATTAAGTAGCAGCGGTGACAAGTATTTTCATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGAAAAGTCAGt > 2:2299462/1‑140 (MQ=255)
ttCCCACCGGAATTAAGTAGCAGCGGTGACAAGTATTTTCATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGAAAAGTCAGTa < 1:2277741/140‑1 (MQ=255)
ttCCCACCGGAATTAAGTAGCAGCGGTGACAAGTATTTTCATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGAAAAGTCAGTa < 1:1804023/140‑1 (MQ=255)
tCCCACCGGAATTAAGTAGCAGCGGTGACAAGTATTTTCATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGAAAAGTCAGTAg < 2:1977001/140‑1 (MQ=255)
cccACCGGAATTAAGTAGCAGCGGTGACAAGTATTTTCATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGAAAAGTCAGTAGa < 2:1760603/140‑1 (MQ=255)
cccACCGGAATTAAGTAGCAGCGGTGACAAGTATTTTCATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGAAAAGTCAGTAGa < 2:2324792/140‑1 (MQ=255)
cccACCGGAATTAAGTAGCAGCGGTGACAAGTATTTTCATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGAAAAGTCAGTAGa < 1:272235/140‑1 (MQ=255)
cccACCGGAATTAAGTAGCAGCGGTGACAAGTATTTTCATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGAAAAGTCAGTAGa > 2:26966/1‑140 (MQ=255)
cACCGGAATTAAGTAGCAGCGGTGACAAGTATTTTCATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGAAAAGTCAGTAGata > 2:1356366/1‑140 (MQ=255)
gAATTAAGTAGCAGCGGTGACAAGTATTTTCATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GGTT‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGAAAAGTCAGTAGATATTCa > 1:1662413/1‑140 (MQ=255)
gTAGCAGCGGTGACAAGTATTTTCATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGAAAAGTCAGTAGATATTCATAGGCAAg < 2:1962902/140‑1 (MQ=255)
agcagcGGTTACAAGTTTTTTCATCTACGTAACTATTCGGAATATTCAGAATATACTAGCTGT‑‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGAAAAGTCAGTAGATATTCATAGGCAAGTa < 1:20236/140‑1 (MQ=255)
agcagcGGTGACAAGTATTTTCATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGAAAAGTCAGTAGATATTCATAGGCAAGTa < 2:1894384/140‑1 (MQ=255)
agcagcGGTGACAAGTATTTTCATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGAAAAGTCAGTAGATATTCATAGGCAAGTa < 2:2216543/140‑1 (MQ=255)
agcagcGGTGACAAGTATTTTCATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGAAAAGTCAGTAGATATTCATAGGCAAGTa < 2:130839/140‑1 (MQ=255)
agcagcGGTGACAAGTATTTTCATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGAAAAGTCAGTAGATATTCATAGGCAAGTa < 1:1232903/140‑1 (MQ=255)
agcagcGGTGACAAGTATTTTCATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGAAAAGTCAGTAGATATTCATAGGCAAGTa < 1:317759/140‑1 (MQ=255)
agcagcGGTGACAAGTATTTTCATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGAAAAGTCAGTAGATATTCATAGGCAAGTa < 1:351743/140‑1 (MQ=255)
agcagcGGTGACAAGTATTTTCATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGAAAAGTCAGTAGATATTCATAGGCAAGTa < 1:1673062/140‑1 (MQ=255)
agcagcGGTGACAAGTATTTTCATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGAAAAGTCAGTAGATATTCATAGGCAAGTa < 1:1816408/140‑1 (MQ=255)
agcagcGGTGACAAGTATTTTCATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGAAAAGTCAGTAGATATTCATAGGCAAGTa < 1:2187268/140‑1 (MQ=255)
gcagcGGTGACAAGTATTTTCATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GGTT‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGAAAAGTCAGTAGATATTCATAGGCAAGTa < 2:1556520/140‑1 (MQ=255)
cagcGGTGACAAGTATTTTCATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGTACAGCCAGTAGATATTCATAGGCAAATAAg > 2:641703/1‑140 (MQ=255)
cagcGGTGACAAGTATTTTCATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGAAAAGTCAGTAGATATTCATAGGCAAGTAAg < 2:1873910/140‑1 (MQ=255)
aCAAGTATTTTCATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGAAAAGTCAGTAGATATTCATAGGCAAGTAAGGTTTtata > 2:2052994/1‑140 (MQ=255)
aCAAGTATTTTCATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGAAAAGTCAGTAGATATTCATAGGCAAGTAAGGTTTtata < 2:1056963/140‑1 (MQ=255)
cATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAGTCATGACTTTTTTCCTGAAAAGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACa < 2:2187513/140‑1 (MQ=255)
cATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGAAAAGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACa < 2:548193/140‑1 (MQ=255)
aTCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGAAAAGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAg > 2:1620205/1‑140 (MQ=255)
tACGTAACTATTCGGAATATTCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGAAAAGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGAt < 1:39900/140‑1 (MQ=255)
tACGTAACTATTCGGAATATTCAGAATATACTAGC‑GG‑‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGAAAAGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGAtt < 1:2291878/140‑1 (MQ=255)
aCGTAACTATTCGGAATATTCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGAAAAGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGAtt < 1:1614220/140‑1 (MQ=255)
aCGTAACTATTCGGAATATTCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGAAAAGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGAtt < 1:817825/140‑1 (MQ=255)
cGTAACTATTCGGAATATTCAGAATATACTAGCAGT‑‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGAAAAGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGAc > 1:36593/1‑133 (MQ=255)
cGTAACTATTCGGAATATTCAGAATATACTAGCAGT‑‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGAAAAGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGAc < 2:36593/133‑1 (MQ=255)
aCTATTCGGAATATTCAGAATATACTCGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGAAAAGTCAGTAGATATTCATAGGCACGTAAGGTTTTATACTTTGCTGACAGGATTCAGGc < 2:2135240/140‑1 (MQ=255)
aCTATTCGGAATATTCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGAAAAGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGc < 1:641703/140‑1 (MQ=255)
aCTATTCGGAATATTCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGAAAAGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGc < 2:1298243/140‑1 (MQ=255)
ttCGGAATATTCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGAAAAGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGt > 2:1841870/1‑140 (MQ=255)
tCGGAATATTCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGAAAAGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGtc < 1:2101809/140‑1 (MQ=255)
cGGAATATTCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGAAAAGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGtct < 2:383147/140‑1 (MQ=255)
cGGAATATTCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGAAAAGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGtct > 2:1007739/1‑140 (MQ=255)
gAATATTCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGAAAAGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCa < 1:47814/140‑1 (MQ=255)
tatTCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGAATAGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGAc > 1:796257/1‑140 (MQ=255)
atTCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGAAAAGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACt < 1:1840487/140‑1 (MQ=255)
ttCAGAATATACTAGC‑GGTT‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGAAAAGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACt < 1:114535/140‑1 (MQ=255)
tCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGAAAAGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGGCAGGATTCAGGCCTGtc < 1:187168/131‑1 (MQ=255)
tCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGAAAAGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACt < 2:954991/138‑1 (MQ=255)
tCAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGAAAAGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGa < 2:784974/140‑1 (MQ=255)
cAGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGAAAAGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGAc < 2:1437075/140‑1 (MQ=255)
aGAATATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGAATAGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACa < 2:796257/140‑1 (MQ=255)
aaTATACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGAAAAGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATg > 1:1003360/1‑140 (MQ=255)
atatACTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGAAAAGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATgg > 1:1588513/1‑140 (MQ=255)
tataCTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGAAAAGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGa < 2:1193636/140‑1 (MQ=255)
aCTAGC‑GGTT‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGAAAAGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGAc < 2:1805670/129‑1 (MQ=255)
aCTAGC‑GGT‑‑TTTTTTTTTGAGTTTGTTGATTTTTATCAAATCATGACTTTTTTCCTGAAAAGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGt > 2:344197/1‑140 (MQ=255)
aCTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGAAAAGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGt > 2:2121264/1‑140 (MQ=255)
aCTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGAAAAGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGt > 1:2411753/1‑140 (MQ=255)
cTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCGAATCATGACTTTTTTCCTGAAAAGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTa > 1:919320/1‑140 (MQ=255)
cTAGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGAAAAGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTa < 2:243214/140‑1 (MQ=255)
aGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGAAAAGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAAt < 2:2086932/140‑1 (MQ=255)
aGC‑GGT‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGAAAAGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAAt < 1:26966/140‑1 (MQ=255)
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TATTATTTACAAACTAATTGTTTCAAATAATACATGGCTGATTATGCGGAAATAAATAATTTCCCACCGGAATTAAGTAGCAGCGGTGACAAGTATTTTCATCTACGTAACTATTCGGAATATTCAGAATATACTAGC‑GG‑‑‑TTTTTTTTTGAGTTTGATGATTTTTATCAAATCATGACTTTTTTCCTGAAAAGTCAGTAGATATTCATAGGCAAGTAAGGTTTTATACTTTGCTGACAGGATTCAGGCCTGTCTCAGACTGACATGGATGTAAT > NC_000913/4556621‑4556894
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
