Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A12 F73 I1 R1
|
28 |
94.5 |
3320338 |
99.3% |
3297095 |
139.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
NC_000913 |
3,058,051 |
(CAG)3→2 |
coding (358‑360/1233 nt) |
serA ← |
phosphoglycerate dehydrogenase |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
NC_000913 |
3058043 |
3058045 |
3 |
97 [0] |
[0] 97 |
serA |
phosphoglycerate dehydrogenase |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
3058046 = | 0 (0.000) | 96 (1.040) |
51/260 |
0.4 |
100% |
coding (365/1233 nt) |
serA |
phosphoglycerate dehydrogenase |
| ? | NC_000913 |
= 3058042 |
0 (0.000) | coding (369/1233 nt) |
serA |
phosphoglycerate dehydrogenase |
GATK/CNVnator alignment
N/A
