Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F73 I1 R1	33	77.0	2636344	99.1%	2612616	139.2

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,067,165	A→T	I3I (ATT→ATA)	ygfI ←	putative LysR‑type DNA‑binding transcriptional regulator YgfI

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,067,165	0	A	T	100.0%	305.7 / NA	86	I3I (ATT→ATA)	ygfI	putative LysR‑type DNA‑binding transcriptional regulator YgfI
Reads supporting (aligned to +/- strand): ref base A (0/0); new base T (35/51); total (35/51)

TATAGCCAATTTGTTCTTCCAGCGCGGCAATGCTTTTACCAAATGGCGAAGCCGTCATATGGATTTTTTCTGCCGCCCGGGCAATATTATTGGTTTGCGCTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAAAATGTCCATCCCCCTCCCCCGCATCCTTGTCCGCTTAACCGTTTCAGTCAGCCTATCCTTGATGAAACCGCGAGCAAAGATAGGTGATTACGTCATGGTTTTACAGAAAATTACAGAAAAAGGAGGCAATATCGGGT  >  NC_000913/3067029‑3067301

tataGCCAATTTGTTCTTCCAGCGCGGCAATGCTTTTACCAAATGGCGAAGCCGTCATATGGATTTTTTCTGCCGCCCGGGCAATATTATTGGTTTGCGCTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAATATg                                                                                                                                       >  1:937458/1‑140 (MQ=255)

tataGCCAATTTGTTCTTCCAGCGCGGCAATGCTTTTACCAAATGGCGAAGCCGTCATATGGATTTTTTCTGCCGCCCGGGCAATATTATTGGTTTGCGCTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAATATg                                                                                                                                       >  1:442836/1‑140 (MQ=255)

tataGCCAATTTGTTCTTCCAGCGCGGCAATGCTTTTACCAAATGGCGAAGCCGTCATATGGATTTTTTCTGCCGCCCGGGCAATATTATTGGTTTGCGCTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAATATg                                                                                                                                       >  2:1226024/1‑140 (MQ=255)

   aGCCAATTTGTTCTTCCAGCGCGGCAATGCTTTTACCAAATGGCGAAGCCGTCATATGGATTTTTTCTGCCGCCCGGGCAATATTATTGGTTTGCGCTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAATATGTcc                                                                                                                                    >  2:935959/1‑140 (MQ=255)

    gCCAATTTGTTCTTCCAGCGCGGCAATGCTTTTACCAAATGGCGAAGCCGTCATATGGATTTTTTCTGCCGCCCGGGCAATATTATTGGTTTGCGCTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAATATGTCCa                                                                                                                                   <  2:640728/140‑1 (MQ=255)

    gCCAATTTGTTCTTCCAGCGCGGCAATGCTTTTACCAAATGGCGAAGCCGTCATATGGATTTTTTCTGCCGCCCGGGCAATATTATTGGTTTGCGCTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAATATGTCCa                                                                                                                                   <  2:533317/140‑1 (MQ=255)

     ccAATTTGTTCTTCCAGCGCGGCAATGCTTTTACCAAATGGCGAAGCCGTCATATGGATTTTTTCTGCCGCCCGGGCAATATTATTGGTTTGCGCTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAATATGTCCAt                                                                                                                                  >  2:682009/1‑140 (MQ=255)

        aTTTGTTCTTCCAGCGCGGCAATGCTTTTACCAAATGGCGAAGCCGTCATATGGATTTTTTCTGCCGCCCGGGCAATATTATTGGTTTGCGCTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAATATGTCCAtccc                                                                                                                               >  1:615102/1‑140 (MQ=255)

         tttGTTCTTCCAGCGCGGCAATGCTTTTACCAAATGGCGAAGCCGTCATATGGATTTTTTCTGCCGCCCGGGCAATATTATTGGTTTGCGCTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAATATGTCCAtcccc                                                                                                                              <  1:1294313/140‑1 (MQ=255)

          ttGTTCTTCCAGCGCGGCAATGCTTTTACCAAATGGCGAAGCCGTCATATGGATTTTTTCTGCCGCCCGGGCAATATTATTGGTTTGCGCTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAATATGTCCAtccccc                                                                                                                             <  1:1016911/140‑1 (MQ=255)

          ttGTTCTTCCAGCGCGGCAATGCTTTTACCAAATGGCGAAGCCGTCATATGGATTTTTTCTGCCGCCCGGGCAATATTATTGGTTTGCGCTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAATATGTCCAtccccc                                                                                                                             >  2:266588/1‑140 (MQ=255)

           tGTTCTTCCAGCGCGGCAATGCTTTTACCAAATGGCGAAGCCGTCATATGGATTTTTTCTGCCGCCCGGGCAATATTATTGGTTTGCGCTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAATATGTCCAtccccct                                                                                                                            <  2:111430/140‑1 (MQ=255)

           tGTTCTTCCAGCGCGGCAATGCTTTTACCAAATGGCGAAGCCGTCATATGGATTTTTTCTGCCGCCCGGGCAATATTATTGGTTTGCGCTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAATATGTCCAtccccct                                                                                                                            <  1:367363/140‑1 (MQ=255)

            gTTCTTCCAGCGCGGCAATGCTTTTACCAAATGGCGAAGCCGTCATATGGATTTTTTCTGCCGCCCGGGCAATATTATTGGTTTGCGCTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAATATGTCCAtccccctc                                                                                                                           <  2:134982/140‑1 (MQ=255)

            gTTCTTCCAGCGCGGCAATGCTTTTACCAAATGGCGAAGCCGTCATATGGATTTTTTCTGCCGCCCGGGCAATATTATTGGTTTGCGCTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAATATGTCCAtccccctc                                                                                                                           <  2:823701/140‑1 (MQ=255)

               cttcCAGCGCGGCAATGCTTTTACCAAATGGCGAAGCCGTCATATGGATTTTTTCTGCCGCCCGGGCAATATTATTGGTTTGCGCTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAATATGTCCAtccccctcccc                                                                                                                        >  2:457219/1‑140 (MQ=255)

                 tcCAGCGCGGCAATGCTTTTACCAAATGGCGAAGCCGTCATATGGATTTTTTCTGCCGCCCGGGCAATATTATTGGTTTGCGCTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAATATGTCCATCCCCCTCCCCCg                                                                                                                      <  1:1122755/140‑1 (MQ=255)

                   cAGCGCGGCAATGCTTTTACCAAATGGCGAAGCCGTCATATGGATTTTTTCTGCCGCCCGGGCAATATTATTGGTTTGCGCTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAATATGTCCATCCCCCTCCCCCGCa                                                                                                                    <  1:604341/140‑1 (MQ=255)

                          gCAATGCTTTTACCAAATGGCGAAGCCGTCATATGGATTTTTTCTGCCGCCCGGGCAATATTATTGGTTTGCGCTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGt                                                                                                             <  2:615102/140‑1 (MQ=255)

                          gCAATGCTTTTACCAAATGGCGAAGCCGTCATATGGATTTTTTCTGCCGCCCGGGCAATATTATTGGTTTGCGCTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGt                                                                                                             <  2:937458/140‑1 (MQ=255)

                          gCAATGCTTTTACCAAATGGCGAAGCCGTCATATGGATTTTTTCTGCCGCCCGGGCAATATTATTGGTTTGCGCTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGt                                                                                                             <  1:657209/140‑1 (MQ=255)

                                  tttACCAAATGGCGAAGCCGTCATATGGATTTTTTCTGCCGCCCGGGCAATATTATTGGTTTGCGCTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGTCCGCTTaa                                                                                                     <  2:1038721/140‑1 (MQ=255)

                                         aaTGGCGAAGCCGTCATATGGATTTTTTCTGCCGCCCGGGCAATATTATTGGTTTGCGCTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGTCCGCTTAACCGTTtc                                                                                              >  1:465501/1‑140 (MQ=255)

                                           tGGCGAAGCCGTCATATGGATTTTTTCTGCCGCCCGGGCAATATTATTGGTTTGCGCTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGTCCGCTTAACCGTTtcag                                                                                            <  1:1008324/140‑1 (MQ=255)

                                            ggCGAAGCCGTCATATGGATTTTTTCTGCCGCCCGGGCAATATTATTGGTTTGCGCTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGTCCGCTTAACCGTTtcagt                                                                                           <  1:310654/140‑1 (MQ=255)

                                            ggCGAAGCCGTCATATGGATTTTTTCTGCCGCCCGGGCAATATTATTGGTTTGCGCTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGTCCGCTTAACCGTTtcagt                                                                                           <  1:1276629/140‑1 (MQ=255)

                                            ggCGAAGCCGTCATATGGATTTTTTCTGCCGCCCGGGCAATATTATTGGTTTGCGCTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGTCCGCTTAACCGTTtcagt                                                                                           <  2:860927/140‑1 (MQ=255)

                                            ggCGAAGCCGTCATATGGATTTTTTCTGCCGCCCGGGCAATATTATTGGTTTGCGCTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGTCCGCTTAACCGTTtcagt                                                                                           <  1:471626/140‑1 (MQ=255)

                                              cGAAGCCGTCATATGGATTTTTTCTGCCGCCCGGGCAATATTATTGGTTTGCGCTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGTCCGc                                                                                                         >  1:98804/1‑124 (MQ=255)

                                              cGAAGCCGTCATATGGATTTTTTCTGCCGCCCGGGCAATATTATTGGTTTGCGCTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGTCCGc                                                                                                         <  2:98804/124‑1 (MQ=255)

                                                aaGCCGTCATATGGATTTTTTCTGCCGCCCGGGCAATATTATTGGTTTGCGCTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGTCCGCTTAACCGTTTCAGTCAGc                                                                                       >  2:1275330/1‑140 (MQ=255)

                                                aaGCCGTCATATGGATTTTTTCTGCCGCCCGGGCAATATTATTGGTTTGCGCTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGTCCGCTTAACCGTTTCAGTCAGc                                                                                       <  1:1205972/140‑1 (MQ=255)

                                                 aGCCGTCATATGGATTTTTTCTGCCGCCCGGGCAATATTATTGGTTTGCGCTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGTCCGCTTAACCGTTTCAGTCAGcc                                                                                      <  1:1275330/140‑1 (MQ=255)

                                                 aGCCGTCATATGGATTTTTTCTGCCGCCCGGGCAATATTATTGGTTTGCGCTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGTCCGCTTAACCGTTTCAGTCAGcc                                                                                      <  2:442836/140‑1 (MQ=255)

                                                      tCATATGGATTTTTTCTGCCGCCCGGGCAATATTATTGGTTTGCGCTAATAAAATGAAATTGCGCATCTTTTTCGTAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGTCCGCTTAACCGTTTCAGTCAGCCTATcc                                                                                 >  1:818667/1‑140 (MQ=255)

                                                       cATATGGATTTTTTCTGCCGCCCGGGCAATATTATTGGTTTGCGCTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGTCCGCTTAACCGTTTCAGTCAGCCTATCCt                                                                                >  1:89221/1‑140 (MQ=255)

                                                             gATTTTTTCTGCCGCCCGGGCAATATTATTGGTTTGCGCTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGTCCGCTTAACCGTTTCAGTCAGCCTATCCTtgatga                                                                          >  2:764565/1‑140 (MQ=255)

                                                                  tttCTGCCGCCCGGGCAATATTATTGGTTTGCGCTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGTCCGCTTAACCGTTTCAGTCAGCCTATCCTTGATGAAACcg                                                                     <  2:239022/140‑1 (MQ=255)

                                                                    tCTGCCGCCCGGGCAATATTATTGGTTTGCGCTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGTCCGCTTAACCGTTTCAGTCAGCCTATCCTTGATGAAACcg                                                                     <  1:449013/138‑1 (MQ=255)

                                                                    tCTGCCGCCCGGGCAATATTATTGGTTTGCGCTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGTCCGCTTAACCGTTTCAGTCAGCCTATCCTTGATGAAACcg                                                                     >  2:449013/1‑138 (MQ=255)

                                                                     cTGCCGCCCGGGCAATATTATTGGTTTGCGCTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGTCCGCTTAACCGTTTCAGTCAGCCTATCCTTGATGAAACCGCGa                                                                  <  1:1226024/140‑1 (MQ=255)

                                                                      tGCCGCCCGGGCAATATTATTGGTTTGCGCTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGTCCGCTTAACCGTTTCAGTCAGCCTATCCTTGATGAAACCGCGAg                                                                 <  1:764565/140‑1 (MQ=255)

                                                                      tGCCGCCCGGGCAATATTATTGGTTTGCGCTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGTCCGCTTAACCGTTTCAGTCAGCCTATCCTTGATGAAACCGCGAg                                                                 <  2:730525/140‑1 (MQ=255)

                                                                       gccgccCGGGCAATATTATTGGTTTGCGCTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGTCCGCTTAACCGTTTCAGTCAGCCTATCCTTGATGAAACCGCGAGc                                                                <  1:682009/140‑1 (MQ=255)

                                                                       gccgccCGGGCAATATTATTGGTTTGCGCTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGTCCGCTTAACCGTTTCAGTCAGCCTATCCTTGATGAAACCGCGAGc                                                                <  2:89221/140‑1 (MQ=255)

                                                                       gccgccCGGGCAATATTATTGGTTTGCGCTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGTCCGCTTAACCGTTTCAGTCAGCCTATCCTTGATGAAACCGCGAGc                                                                >  2:384707/1‑140 (MQ=255)

                                                                         cgccCGGGCAATATTATTGGTTTGCGCTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGTCCGCTTAACCGTTTCAGTCAGCCTATCCTTGATGAAACCGCGAGCaa                                                              <  2:280945/140‑1 (MQ=255)

                                                                          gccCGGGCAATATTATTGGTTTGCGCTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGTCCGCTTAACCGTTTCAGTCAGCCTATCCTTGATGAAACCGCGAGCaaa                                                             <  1:766974/140‑1 (MQ=255)

                                                                            ccGGGCAATATTATTGGTTTGCGCTAATAAATTGAAATTGCGCATCTTTTTCGAAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGTCCGCTTAACCGTTTCAGTCAGCCTATCCTTGATGAAACCGCGAGCAAAGa                                                           <  2:1093951/140‑1 (MQ=255)

                                                                             cGGGCAATATTATTGGTTTGCGCTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGTCCGCTTAACCGTTTCAGTCAGCCTATCCTTGATGAAACCGCGAGCAAAGAt                                                          >  2:577098/1‑140 (MQ=255)

                                                                               ggCAATATTATTGGTTTGCGCTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGTCCGCTTAACCGTTTCAGTCAGCCTATCCTTGATGAAACCGCGAGCAAAGATAg                                                        <  1:266588/140‑1 (MQ=255)

                                                                                 cAATATTATTGGTTTGCGCTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGTCCGCTTAACCGTTTCAGTCAGCCTATCCTTGATGAAACCGCGAGCAAAGATAGGt                                                      <  1:384707/140‑1 (MQ=255)

                                                                                    tattatTGGTTTGCGCTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGTCCGCTTAACCGTTTCAGTCAGCCTATCCTTGATGAAACCGCGAGCAAAGATAGGTGAt                                                   <  1:544243/140‑1 (MQ=255)

                                                                                    tattatTGGTTTGCGCTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGTCCGCTTAACCGTTTCAGTCAGCCTATCCTTGATGAAACCGCGAGCAAAGATAGGTGAt                                                   <  1:577098/140‑1 (MQ=255)

                                                                                    tattatTGGTTTGCGCTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGTCCGCTTAACCGTTTCAGTCAGCCTATCCTTGATGAAACCGCGAGCAAAGATAGGTGAt                                                   <  1:160989/140‑1 (MQ=255)

                                                                                            gTTTGCGCTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGTCCGCTTAACCGTTTCAGTCAGCCTATCCTTGATGAAACCGCGAGCAAAGATAGGTGATTACGTCAt                                           >  2:1072168/1‑140 (MQ=255)

                                                                                              ttGCGCTAATAAAATGAAATTGCGCATCTTTTTCGTAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGTCCGCTTAACCGTTTCAGTCAGCCTATCCTTGATGAAACCGCGAGCAAAGATAGGTGATTACGTCATgg                                         >  1:209989/1‑140 (MQ=255)

                                                                                              ttGCGCTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGTCCGCTTAACCGTTTCAGTCAGCCTATCCTTGATGAAACCGCGAGCAAAGATATGCGATTACGTCATgg                                         >  1:425738/1‑140 (MQ=255)

                                                                                              ttGCGCTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGTCCGCTTAACCGTTTCAGTCAGCCTATCCTTGATGAAACCGCGAGCAAAGATAGGTGATTACGTCATgg                                         >  2:408987/1‑140 (MQ=255)

                                                                                              ttGCGCTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGTCCGCTTAACCGTTTCAGTCAGCCTATCCTTGATGAAACCGCGAGCAAAGATAGGTGATTACGTCATgg                                         >  1:1073581/1‑140 (MQ=255)

                                                                                              ttGCGCTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGTCCGCTTAACCGTTTCAGTCAGCCTATCCTTGATGAAACCGCGAGCAAAGATAGGTGATTACGTCATgg                                         >  2:67741/1‑140 (MQ=255)

                                                                                              ttGCGCTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGTCCGCTTAACCGTTTCAGTCAGCCTATCCTTGATGAAACCGCGAGCAAAGATAGGTGATTACGTCATgg                                         >  1:1137897/1‑140 (MQ=255)

                                                                                              ttGCGCTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGTCCGCTTAACCGTTTCAGTCAGCCTATCCTTGATGAAACCGCGAGCAAAGATAGGTGATTACGTCATgg                                         >  1:1039852/1‑140 (MQ=255)

                                                                                               tGCGCTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGTCCGCTTAACCGTTTCAGTCAGCCTATCCTTGATGAAACCGCGAGCAAAGATAg                                                        <  2:1197809/124‑1 (MQ=255)

                                                                                               tGCGCTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGTCCGCTTAACCGTTTCAGTCAGCCTATCCTTGATGAAACCGCGAGCAAAGATAg                                                        >  1:1197809/1‑124 (MQ=255)

                                                                                               tGCGCTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGTCCGCTTAACCGTTTCAGTCAGCCTATCCTTGATGAAACCGCGAGCAAAGATAGGTGATTACGTCATGGt                                        >  1:1244086/1‑140 (MQ=255)

                                                                                                 cgcTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGTCCGCTTAACCGTTTCAGTCAGCCTATCCTTGATGAAACCGCGAGCATAGATAGGTGATTACGTCATGGttt                                      >  2:1170170/1‑140 (MQ=255)

                                                                                                 cgcTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGTCCGCTTAACCGTTTCAGTCAGCCTATCCTTGATGAAACCGCGAGCAAAGATAGGTGATTACGTCATGGttt                                      >  1:488473/1‑140 (MQ=255)

                                                                                                 cgcTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGTCCGCTTAACCGTTTCAGTCAGCCTATCCTTGATGAAACCGCGAGCAAAGATAGGTGATTACGTCATGGttt                                      >  2:1166843/1‑140 (MQ=255)

                                                                                                      ataaAATGAAATTGCGCATCTTTTTCGAAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGTCCGCTTAACCGTTTCAGTCAGCCTATCCTTGATGAAACCGCGAGCAAAGATAGGTGATTACGTCATGGTTttacag                                 >  2:1084761/1‑140 (MQ=255)

                                                                                                        aaaaTGAAATTGCGCATCTTTTTCGAAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGTCCGCTTAACCGTTTCAGTCAGCCTATCCTTGATGAAACCGCGAGCAAAGATAGGTGATTACGTCATGGTTttacagaa                               <  1:697571/140‑1 (MQ=255)

                                                                                                            tGAAATTGCGCATCTTTTTCGAAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGTCCGCTTAACCGTTTCAGTCAGCCTATCCTTGATGAAACCGCGAGCAAAGATAGGTGATTACGTCATGGTTttacagaaaatt                           <  1:1072168/140‑1 (MQ=255)

                                                                                                             gAAATTGCGCATCTTTTTCGAAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGTCCGCTTAACCGTTTCAGTCAGCCTACCCTTGATGAAACCGCGAGCAAAGATAGGTGATTACGTCATGGTTttacagaaaatta                          <  1:1166843/140‑1 (MQ=255)

                                                                                                              aaaTTGCGCATCTTTTTCGAAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGTCCGCTTAACCGTTTCAGTCAGCCTATCCTTGATGAAACCGCGAGCAAAGATAGGTGATTACGTCATGGTTttacagaaaattac                         >  1:578153/1‑140 (MQ=255)

                                                                                                                aTTGCGCATCTTTTTCGAAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGTCCGCTTAACCGTTTCAGTCAGCCTATCCTTGATGAAACCGCGAGCAAAGATAGGTGATTACGTCATGGTTttacagaaaattacag                       <  1:935959/140‑1 (MQ=255)

                                                                                                                    cgcATCTTTTTCGAAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGTCCGCTTAACCGTTTCAGTCAGCCTATCCTTGATGAAACCGCGAGCAAAGATAGGTGATTACGTCATGGTTttacagaaaattacagaaaa                   >  1:1109462/1‑140 (MQ=255)

                                                                                                                     gcATCTTTTTCGAAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGTCCGCTTAACCGTTTCAGTCAGCCTATCCTTGATGAAACCGCGAGCAAAGATAGGTGATTACGTCATGGTTTTACAGAAAATTACAGaaaaa                  <  1:381692/140‑1 (MQ=255)

                                                                                                                     gcATCTTTTTCGAAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGTCCGCTTAACCGTTTCAGTCAGCCTATCCTTGATGAAACCGCGAGCAAAGATAGGTGATTACGTCATGGTTTTACAGAAAATTACAGaaaaa                  <  2:1039852/140‑1 (MQ=255)

                                                                                                                         cTTTTTCGAAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGTCCGCTTAACCGTTTCAGTCAGCCTATCCTTGATGAAACCGCGAGCAAAGATAGGTGATTACGTCATGGTTTTACAGAAAATTACAGAAAAaggag              >  1:278572/1‑140 (MQ=255)

                                                                                                                          tttttCGAAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGTCCGCTTAACCGTTTCAGTCAGCCTATCCTTGATGAAACCGCGAGCAAAGATAGGTGATTACGTCATGGTTTTACAGAAAATTACAGAAAAaggagg             <  1:67741/140‑1 (MQ=255)

                                                                                                                          tttttCGAAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGTCCGCTTAACCGTTTCAGTCAGCCTATCCTTGATGAAACCGCGAGCAAAGATAGGTGATTACGTCATGGTTTTACAGAAAATTACAGAAAAaggagg             <  2:209989/140‑1 (MQ=255)

                                                                                                                            tttCGAAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGTCCGCTTAACCGTTTCAGTCAGCCTATCCTTGATGAAACCGCGAGCAAAGATAGGTGATTACGTCATGGTTTTACAGAAAATTACAGAAAAAGGAGGCa           >  2:798734/1‑140 (MQ=255)

                                                                                                                            tttCGAAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGTCCGCTTAACCGTTTCAGTCAGCCTATCCTTGATGAAACCGCGAGCAAAGATAGGTGATTACGTCATGGTTTTACAGAAAATTACAGAAAAAGGAGGCa           <  2:89872/140‑1 (MQ=255)

                                                                                                                               cGAAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGTCCGCTTAACCGTTTCAGTCAGCCTATCCTTGATGAAACCGCGAGCAAAGATAGGTGATTACGTCATGGTTTTACAGAAAATTACAGAAAAAGGAGGCAata        <  2:465501/140‑1 (MQ=255)

                                                                                                                                gAAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGTCCGCTTAACCGTTTCAGTCAGCCTATCCTTGATGAAACCGCGAGCAAAGATAGGTGATTACGTCATGGTTTTACAGAAAATTACAGAAAAAGGAGGCAatat       <  1:1084761/140‑1 (MQ=255)

                                                                                                                                gAAATAAATATGTCCATCCCCCTCCCCCGCATCCTTGTCCGCTTAACCGTTTCAGTCAGCCTATCCTTGATGAAACCGCGAGCAAAGATAGGTGATTACGTCATGGTTTTACAGAAAATTACAGAAAAAGGAGGCAatat       <  1:408987/140‑1 (MQ=255)

                                                                                                                                     aaataTGTCCATCCCCCTCCCCCGCATCCTTGTCCGCTTAACCGTTTCAGTCAGCCTATCCTTGATGAAACCGCGAGCAAAGATAGGTGATTACGTCATGGTTTTACAGAAAATTACAGAAAAAGGAGGCAATATCGGGt  <  2:1073581/140‑1 (MQ=255)

TATAGCCAATTTGTTCTTCCAGCGCGGCAATGCTTTTACCAAATGGCGAAGCCGTCATATGGATTTTTTCTGCCGCCCGGGCAATATTATTGGTTTGCGCTAATAAAATGAAATTGCGCATCTTTTTCGAAATAAAAATGTCCATCCCCCTCCCCCGCATCCTTGTCCGCTTAACCGTTTCAGTCAGCCTATCCTTGATGAAACCGCGAGCAAAGATAGGTGATTACGTCATGGTTTTACAGAAAATTACAGAAAAAGGAGGCAATATCGGGT  >  NC_000913/3067029‑3067301

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A