Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A3 F73 I1 R1	23	178.8	6243766	99.3%	6200059	139.3

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,075,256	G→T	G309G (GGC→GGA)	yggF ←	fructose 1,6‑bisphosphatase YggF

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,075,256	0	G	T	100.0%	751.2 / NA	206	G309G (GGC→GGA)	yggF	fructose 1,6‑bisphosphatase YggF
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (117/89); total (117/89)

Only 100 of 226 total aligned reads displayed.

GCAGTTTTCATAAATGAAAATAAATTGTCCTGTGCATCCAGTTGCTCAAGCACATCATCTTCTGTCAGCGTCGCCATTGGTCTTCCGATAGATCACCATCAATGCAGGGAGTCTATTATATTACACGTTTGGTCCGCGCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCACCAGCTCACCGCCCGTCACGCCCGTAGCGCTAAAGAGGATATCGTTCCCCCTCACCAGTTCATCGAGCGAGTACACA  >  NC_000913/3075119‑3075391

 cAGTTTTCATAAATGAAAATAAATTGTCCTGTGCATCCAGTTGCTCAAGCACATCATCTTCTGTCAGCGTCGCCATTGGTCTTCCGATAGATCACCATCAATGCAGGGAGTCTATTATATTACACGTTTGGTCCGctccg                                                                                                                                      <  1:1124141/140‑1 (MQ=255)

 cAGTTTTCATAAATGAAAATAAATTGTCCTGTGCATCCAGTTGCTCAAGCACATCATCTTCTGTCAGCGTCGCCATTGGTCTTCCGATAGATCACCATCAATGCAGGGAGTCTATTATATTACACGTTTGGTCCGctccg                                                                                                                                      <  2:1869778/140‑1 (MQ=255)

 cAGTTTTCATAAATGAAAATAAATTGTCCTGTGCATCCAGTTGCTCAAGCACATCATCTTCTGTCAGCGTCGCCATTGGTCTTCCGATAGATCACCATCAATGCAGGGAGTCTATTATATTACACGTTTGGTCCGctccg                                                                                                                                      <  2:493387/140‑1 (MQ=255)

 cAGTTTTCATAAATGAAAATAAATTGTCCTGTGCATCCAGTTGCTCAAGCACATCATCTTCTGTCAGCGTCGCCATTGGTCTTCCGATAGATCACCATCAATGCAGGGAGTCTATTATATTACACGTTTGGTCCGctccg                                                                                                                                      <  1:949998/140‑1 (MQ=255)

 cAGTTTTCATAAATGAAAATAAATTGTCCTGTGCATCCAGTTGCTCAAGCACATCATCTTCTGTCAGCGTCGCCATTGGTCTTCCGATAGATCACCATCAATGCAGGGAGTCTATTATATTACACGTTTGGTCCGctccg                                                                                                                                      <  1:768290/140‑1 (MQ=255)

   gTTTTCATAAATGAAAATAAATTGTCCTGTGCATCCAGTTGCTCAAGCACATCATCTTCTGTCAGCGTCGCCATTGGTCTTCCGATAGATCACCATCAATGCAGGGAGTCTATTATATTACACGTTTGGTCCGCtccgcc                                                                                                                                    <  2:1023450/140‑1 (MQ=255)

    ttttCATAAATGAAAATAAATTGTCCTGTGCATCCAGTTGCTCAAGCACATCATCTTCTGTCAGCGTCGCCATTGGTCTTCCGATAGATCACCATCAATGCAGGGAGTCTATTATATTACACGTTTGGTCCGCTccgccg                                                                                                                                   >  2:1994495/1‑140 (MQ=255)

     tttCATAAATGAAAATAAATTGTCCTGTGCATCCAGTTGCTCAAGCACATCATCTTCTGTCAGCGTCGCCATTGGTCTTCCGATAGATCACCATCAATGCAGGGAGTCTATTATATTACACGTTTGGTCCGCTCCGCCGa                                                                                                                                  <  2:685994/140‑1 (MQ=255)

      ttCATAAATGAAAATAAATTGTCCTGTGCATCCAGTTGCTCAAGCACATCATCTTCTGTCAGCGTCGCCATTGGTCTTCCGATAGATCACCATCAATGCAGGGAGTCTATTATATTACACGTTTGGTCCGCTCCGCCGAt                                                                                                                                 <  2:244361/140‑1 (MQ=255)

      ttCATAAATGAAAATAAATTGTCCTGTGCATCCAGTTGCTCAAGCACATCATCTTCTGTCAGCGTCGCCATTGGTCTTCCGATAGATCACCATCAATGCAGGGAGTCTATTATATTACACGTTTGGTCCGCTCCGCCGAt                                                                                                                                 <  1:2489018/140‑1 (MQ=255)

              tGAAAATAAATTGTCCTGTGCATCCAGTTGCTCAAGCACATCATCTTCTGTCAGCGTCGCCATTGGTCTTCCGATAGATCACCATCAATGCAGGGAGTCTATTATATTACACGTTTGGTCCGCTCCGCCGATCAGTAATg                                                                                                                         >  2:1363289/1‑140 (MQ=255)

                aaaaTAAATTGTCCTGTGCATCCAGTTGCTCAAGCACATCATCTTCTGTCAGCGTCGCCATTGGTCTTCCGATAGATCACCATCAATGCAGGGAGTCTATTATATTACACGTTTGGTCCGCTCCGCCGATCAGTAATGTc                                                                                                                       >  1:443781/1‑140 (MQ=255)

                  aataaatTGTCCTGTGCATCCAGTTGCTCAAGCACATCATCTT‑TGTCAGCGTCGCCATTGGTCTTCCGATAGATCACCATCAATGCAGGGAGTCTATTATATTACACGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGc                                                                                                                    <  1:345891/140‑1 (MQ=255)

                          gTCCTGTGCATCCAGTTGCTCAAGCACATCATCTTCTGTCAGCGTCGCCATTGGTCTTCCGATAGATCACCATCAATGCAGGGAGTCTATTATATTACACGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCa                                                                                                             >  1:1519362/1‑140 (MQ=255)

                          gTCCTGTGCATCCAGTTGCTCAAGCACATCATCTTCTGTCAGCGTCGCCATTGGTCTTCCGATAGATCACCATCAATGCAGGGAGTCTATTATATTACACGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCa                                                                                                             >  2:1193034/1‑140 (MQ=255)

                           tCCTGTGCATCCAGTTGCTCAAGCACATCATCTTCTGTCAGCGTCGCCATTGGTCTTCCGATAGATCACCATCAATGCAGGGAGTCTATTATATTACACGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCAc                                                                                                            >  2:2816561/1‑140 (MQ=255)

                             cTGTGCATCCAGTTGCTCAAGCACATCATCTTCTGTCAGCGTCGCCATTGGTCTTCCGATAGATCACCATCAATGCAGGGAGTCTATTATATTACACGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCAccc                                                                                                          >  2:2385657/1‑140 (MQ=255)

                                tgCATCCAGTTGCTCAAGCACATCATCTTCTGTCAGCGTCGCCATTGGTCTTCCGATAGATCACCATCAATGCAGGGAGTCTATTATATTACACGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCAt                                                                                                       >  1:2121681/1‑140 (MQ=255)

                                     ccAGTTGCTCAAGCACATCATCTTCTGTCAGCGTCGCCATTGGTCTTCCGATAGATCACCATCAATGCAGGGAGTCTATTATATTACACGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGcc                                                                                                  >  1:155434/1‑140 (MQ=255)

                                     ccAGTTGCTCAAGCACATCATCTTCTGTCAGCGTCGCCATTGGTCTTCCGATAGATCACCATCAATGCAGGGAGTCTATTATATTACACGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGcc                                                                                                  >  1:1431864/1‑140 (MQ=255)

                                     ccAGTTGCTCAAGCACATCATCTTCTGTCAGCGTCGCCATTGGTCTTCCGATAGATCACCATCAATGCAGGGAGTCTATTATATTACACGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGcc                                                                                                  <  1:1994495/140‑1 (MQ=255)

                                       ggTTGCTCAAGCCCATCATCTTCTGTCTGCGTCGCCATTGGTCTTCCGATAGGTCACCATCAATGCAGGGAGTCTATTATATTACACGTGTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCTCCCCATTCGCCGt                                                                                                <  2:3053817/139‑1 (MQ=255)

                                       aGTTGCTCAAGCACATCATCTTCTGTCAGCGTCGCCATTGGTCTTCCGATAGATCACCATCAATGCAGGGAGTCTATTATATTACACGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGt                                                                                                <  2:1309556/140‑1 (MQ=255)

                                         ttGCTCAAGCACATCATCTTCTGTCAGCGTCGCCATTGGTCTTCCGATAGATCACCATCAATGCAGGGAGTCTATTATATTACACGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCt                                                                                              >  2:516389/1‑140 (MQ=255)

                                            cTCAAGCACATCATCTTCTGTCAGCGTCGCCATTGGTCTTCCGATAGATCACCATCAATGCAGGGAGTCTATTATATTACACGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGtt                                                                                           >  2:840342/1‑140 (MQ=255)

                                               aaGCACATCATCTTCTGTCAGCGTCGCCATTGGTCTTCCGATAGATCACCATCAATGCAGGGAGTCTATTATATTACACGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGa                                                                                        <  1:2919292/140‑1 (MQ=255)

                                               aaGCACATCATCTTCTGTCAGCGTCGCCATTGGTCTTCCGATAGATCACCATCAATGCAGGGAGTCTATTATATTACACGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGa                                                                                        <  1:176584/140‑1 (MQ=255)

                                               aaGCACATCATCTTCTGTCAGCGTCGCCATTGGTCTTCCGATAGATCACCATCAATGCAGGGAGTCTATTATATTACACGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGa                                                                                        <  2:443781/140‑1 (MQ=255)

                                                 gCACATCATCTTCTGTCAGCGTCGCCATTGGTCTTCCGATAGATCACCATCAATGCAGGGAGTCTATTATATTACACGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATa                                                                                      <  2:301900/140‑1 (MQ=255)

                                                   acaTCATCTTCTGTCAGCGTCGCCATTGGTCTTCCGATAGATCACCATCAATGCAGGGAGTCTATTATATTACACGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATAcc                                                                                    >  1:1884433/1‑140 (MQ=255)

                                                     atcatcTTCTGTCAGCGTCGCCATTGGTCTTCCGATAGATCACCATCAATGCAGGGAGTCTATTATATTACACGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGt                                                                                  >  2:2580861/1‑140 (MQ=255)

                                                        atcTTCTGTCAGCGTCGCCATTGGTCTTCCGATAGATCACCATCAATGCAGGGAGTCTATTATATTACACGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCa                                                                               <  1:1438279/140‑1 (MQ=255)

                                                          cttctGTCAGCGTCGCCATTGGTCTTCCGATAGATCACCATCAATGCAGGGAGTCTATTATATTACACGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCAcc                                                                             <  1:885832/140‑1 (MQ=255)

                                                           ttctGTCAGCGTCGCCATTGGTCTTCCGATAGATCACCATCAATGCAGGGAGTCTATTATATTACACGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCACCa                                                                            >  2:2119268/1‑140 (MQ=255)

                                                             ctGTCAGCGTCGCCATTGGTCTTCCGATAGATCACCATCAATGCAGGGAGTCTATTATATTACACGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCACCAGc                                                                          >  2:942297/1‑140 (MQ=255)

                                                              tGTCAGCGTCGCCATTGGTCTTCCGATAGATCACCATCAATGCAGGGAGTCTATTATATTACACGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCACCAGCt                                                                         >  1:1345283/1‑140 (MQ=255)

                                                               gTCAGCGTCGCCATTGGTCTTCCGATAGATCACCATCAATGCAGGGAGTCTATTATATTACACGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCACCAGCTc                                                                        >  2:2187827/1‑140 (MQ=255)

                                                               gTCAGCGTCGCCATTGGTCTTCCGATAGATCACCATCAATGCAGGGAGTCTATTATATTACACGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCACCAGCTc                                                                        >  2:1055556/1‑140 (MQ=255)

                                                                tCAGCGTCGCCATTGGTCTTCCGATAGATCACCATCAATGCAGGGAGTCTATTATATTACACGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATAc                                                                                     <  1:2588954/126‑1 (MQ=255)

                                                                tCAGCGTCGCCATTGGTCTTCCGATAGATCACCATCAATGCAGGGAGTCTATTATATTACACGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCACCAGCTCa                                                                       <  2:2085097/140‑1 (MQ=255)

                                                                  aGCGTCGCCATTGGTCTTCCGATAGATCACCATCAATGCAGGGAGTCTATTATATTACACGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCACCAGCTCAcc                                                                     >  1:426816/1‑140 (MQ=255)

                                                                        gCCATTGGTCTTCCGATAGATCACCATCAATGCAGGGAGTCTATTATATTACACGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCACCAGCTCACCGCCCGt                                                               <  1:100289/140‑1 (MQ=255)

                                                                                 cTTCCGATAGATCACCATCAATGCAGGGAGTCTATTATATTACACGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCACCAGCTCACCGCCCGTCACGCCCGt                                                      <  1:977276/140‑1 (MQ=255)

                                                                                    ccGATAGATCACCATCAATGCAGGGAGTCTATTATATTACACGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCACCAGCTCACCGCCCGTCACGCCCGTAgc                                                   >  2:1841287/1‑140 (MQ=255)

                                                                                       aTAGATCACCATCAATGCAGGGAGTCTATTATATTACACGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCACCAGCTCACCGCCCGTCACGCCCGTAGCGCt                                                >  1:2235682/1‑140 (MQ=255)

                                                                                            tCACCATCAATGCAGGGAGTCTATTATATTACACGTTTGGTCTGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCACCAGCTCACCGCCCGTCACGCCCGTAGCGCTAAaga                                           >  1:389300/1‑140 (MQ=255)

                                                                                              aCCATCAATGCAGGGAGTCTATTATATTACACGTTTGGTTCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCACCAGCTCACCGCCCGTCACGCCCGTAGCGCTAAAGAgg                                         >  1:725361/1‑140 (MQ=255)

                                                                                              aCCATCAATGCAGGGAGTCTATTATATTACACGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCACCAGCTCACCGCCCGTCACGCCCg                                                       >  1:1473193/1‑126 (MQ=255)

                                                                                              aCCATCAATGCAGGGAGTCTATTATATTACACGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCACCAGCTCACCGCCCGTCACGCCCg                                                       <  2:1473193/126‑1 (MQ=255)

                                                                                              aCCATCAATGCAGGGAGTCTATTATATTACACGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCACCAGCTCACCGCCCGTCACGCCCGTAgcg                                                  >  1:2386030/1‑131 (MQ=255)

                                                                                              aCCATCAATGCAGGGAGTCTATTATATTACACGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCACCAGCTCACCGCCCGTCACGCCCGTAGCGCTAAAGAgg                                         >  1:1282959/1‑140 (MQ=255)

                                                                                              aCCATCAATGCAGGGAGTCTATTATATTACACGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCACCAGCTCACCGCCCGTCACGCCCGTAGCGCTAAAGAgg                                         >  2:2274795/1‑140 (MQ=255)

                                                                                              aCCATCAATGCAGGGAGTCTATTATATTACACGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCACCAGCTCACCGCCCGTCACGCCCGTAGCGCTAAAGAgg                                         >  2:1329696/1‑140 (MQ=255)

                                                                                              aCCATCAATGCAGGGAGTCTATTATATTACACGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCACCAGCTCACCGCCCGTCACGCCCGTAGCGCTAAAGAgg                                         >  1:2067302/1‑140 (MQ=255)

                                                                                              aCCATCAATGCAGGGAGTCTATTATATTACACGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCACCAGCTCACCGCCCGTCACGCCCGTAGCGCTAAAGAgg                                         >  1:1494850/1‑140 (MQ=255)

                                                                                               ccATCAATGCAGGGAGTCTATTATATTACACGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCACCAGCTCACCGCCCGTCACGCCCGTAGCGCTAAAGAGGa                                        >  2:1089038/1‑140 (MQ=255)

                                                                                               ccATCAATGCAGGGAGTCTATTATATTACACGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCACCAGCTCACCGCCCGTCACGCCCGTAGCGCTAAAGAGGa                                        >  1:1728176/1‑140 (MQ=255)

                                                                                                cATCAATGCAGGGAGTCTATTATATTACACGTTTGGTCCGCTCCGCCGATCAGTAATGTATGCGTCCGCACCCCATTCGCCGTCTGTTGGATAACGTTCACCAGCTCACCGCCCGTCACGCCCGTAGCGCTAAAGAGGat                                       <  1:469371/140‑1 (MQ=255)

                                                                                                  tCAATGCAGGGAGTCTATTATATTACACGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCACCAGCTCACCGCCCGTCACGCCCGTAGCGCTAAAGAGGatat                                     >  2:468178/1‑140 (MQ=255)

                                                                                                     aTGCAGGGAGTCTATTATATTACACGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCACCAGCTCACCGCCCGTCACGCCCGTAGCGCTAAAGAGGATATCGt                                  >  1:1258786/1‑140 (MQ=255)

                                                                                                     aTGCAGGGAGTCTATTATATTACACGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCACCAGCTCACCGCCCGTCACGCCCGTAGCGCTAAAGAGGATATCGt                                  <  1:1055556/140‑1 (MQ=255)

                                                                                                     aTGCAGGGAGTCTATTATATTACACGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCACCAGCTCACCGCCCGTCACGCCCGTAGCGCTAAAGAGGATATCGt                                  >  2:2326652/1‑140 (MQ=255)

                                                                                                          gggAGTCTATTATATTACACGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCACCAGCTCACCGCCCGTCACGCCCGTAGCGCTAAAGAGGATATCGTTcccc                             >  2:2839169/1‑140 (MQ=255)

                                                                                                             aGTCTATTATATTACACGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCACCAGCTCACCGCCCGTCACGCCCGTAGCGCTAAAGAGGATATCGt                                  >  1:2875046/1‑132 (MQ=255)

                                                                                                             aGTCTATTATATTACACGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCACCAGCTCACCGCCCGTCACGCCCGTAGCGCTAAAGAGGATATCGTTCCCCCTc                          >  1:2808002/1‑140 (MQ=255)

                                                                                                              gTCTATTATATTACACGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCACCAGCTCACCGCCCGTCACGCCCGTAGCGCTAAAGAGGATATCGTTCCCCCTCa                         >  1:2546745/1‑140 (MQ=255)

                                                                                                                  attatattaCACGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCACCAGCTCACCGCCCGTCACGCCCGTAGCGCTAAAGAGGATATCGTTCCCCCTCACCAg                     >  1:3029422/1‑140 (MQ=255)

                                                                                                                  attatattaCACGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCACCAGCTCACCGCCCGTCACGCCCGTAGCGCTAAAGAGGATATCGTTCCCCCTCACCAg                     <  2:1786631/140‑1 (MQ=255)

                                                                                                                       attaCACGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCACCAGCTCACCGCCCGTCACGCCCGTAGCGCTAAAGAGGATATCGTTCCCCCTCACCAGTTCAt                >  1:1828265/1‑140 (MQ=255)

                                                                                                                       attaCACGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCACCAGCTCACCGCCCGTCACGCCCGTAGCGCTAAAGAGGATATCGTTCCCCCTCACCAGTTCAt                >  2:2672915/1‑140 (MQ=255)

                                                                                                                        ttaCACGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCACCAGCTCACCGCCCGTCACGCCCGTAGCGCTAAAGAGGATATCGTTCCCCCTCACCAGTTCATc               >  1:2194223/1‑140 (MQ=255)

                                                                                                                         taCACGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCACCAGCTCACCGCCCGTCACGCCCGTAGCGCTAAAGAGGATATCGTTCCCCCTCACCAGTTCATcg              >  1:2129201/1‑140 (MQ=255)

                                                                                                                         taCACGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCACCAGCTCACCGCCCGTCACGCCCGTAGCGCTAAAGAGGATATCGTTCCCCCTCACCAGTTCATcg              >  1:502322/1‑140 (MQ=255)

                                                                                                                         taCACGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCACCAGCTCACCGCCCGTCACGCCCGTAGCGCTAAAGAGGATATCGTTCCCCCTCACCAGTTCATcg              >  2:168589/1‑140 (MQ=255)

                                                                                                                         taCACGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCACCAGCTCACCGCCCGTCACGCCCGTAGCGCTAAAGAGGATATCGTTCCCCCTCACCAGTTCATcg              >  2:1503422/1‑140 (MQ=255)

                                                                                                                          acacGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCACCAGCTCACCGCCCGTCACGCCCGTAGCGCTAAAGAGGATATCGTTCCCCCTCACCAGTTCATcga             <  2:389300/140‑1 (MQ=255)

                                                                                                                           cacGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCACCAGCTCACCGCCCGTCACGCCCGTAGCGCTAAAGAGGATATCGTTCCCCCTCACCAGTTCAt                >  2:2927530/1‑136 (MQ=255)

                                                                                                                           cacGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCACCAGCTCACCGCCCGTCACGCCCGTAGCGCTAAAGAGGATATCGTTCCCCCTCACCAGTTCATcgag            >  2:1534185/1‑140 (MQ=255)

                                                                                                                           cacGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCACCAGCTCACCGCCCGTCACGCCCGTAGCGCTAAAGAGGATATCGTTCCCCCTCACCAGTTCATcgag            <  1:1329696/140‑1 (MQ=255)

                                                                                                                           cacGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCACCAGCTCACCGCCCGTCACGCCCGTAGCGCTAAAGAGGATATCGTTCCCCCTCACCAGTTCATcgag            >  1:2674969/1‑140 (MQ=255)

                                                                                                                           cacGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCACCAGCTCACCGCCCGTCACGCCCGTAGCGCTAAAGAGGATATCGTTCCCCCTCACCAGTTCATcgag            >  1:2760256/1‑140 (MQ=255)

                                                                                                                           cacGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCACCAGCTCACCGCCCGTCACGCCCGTAGCGCTAAAGAGGATATCGTTCCCCCTCACCAGTTCATcgag            >  1:2964881/1‑140 (MQ=255)

                                                                                                                           cacGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCACCAGCTCACCGCCCGTCACGCCCGTAGCGCTAAAGAGGATATCGTTCCCCCTCACCAGTTCATcgag            >  2:1627610/1‑140 (MQ=255)

                                                                                                                           cacGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCACCAGCTCACCGCCCGTCACGCCCGTAGCGCTAAAGAGGATATCGTTCCCCCTCACCAGTTCATcgag            >  1:2213297/1‑140 (MQ=255)

                                                                                                                           cacGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCACCAGCTCACCGCCCGTCACGCCCGTAGCGCTAAAGAGGATATCGTTCCCCCTCACCAGTTCATcgag            >  2:2124911/1‑140 (MQ=255)

                                                                                                                           aacGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCACCAGCTCACCGCCCGTCACGCCCGTAGCGCTAAAGAGGATATCGTTCCCCCTCACCAGTTCATcgag            >  2:2789387/2‑140 (MQ=255)

                                                                                                                             cGTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCACCAGCTCACCGCCCGTCACGCCCGTAGCGCTAAAGAGGATATCGTTCCTCCTCACCAGTTCATcgagcg          >  2:1653929/1‑140 (MQ=255)

                                                                                                                              gTTTGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCACCAGCTCACCGCCCGTCACGCCCGTAGCGCTAAAGAGGATATCGTTCCCCCTCACCAGTTCATcgagcga         <  1:1066546/140‑1 (MQ=255)

                                                                                                                               tttGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCACCAGCTCACCGCCCGTCACGCCCGTAGCGCTAAAGAGGATATCGTTCCCCCTCACCAGTTCATcgagcgag        <  2:1493161/140‑1 (MQ=255)

                                                                                                                                ttGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCACCAGCTCACCGCCCGTCACGCCCGTAGCGCTAAAGAGGATATCGTTCCCCCTCACCAGTTCATCGAGCGAGt       >  2:1146799/1‑140 (MQ=255)

                                                                                                                                ttGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCACCAGCTCACCGCCCGTCACGCCCGTAGCGCTAAAGAGGATATCGTTCCCCCTCACCAGTTCATCGAGCGAGt       >  1:2631996/1‑140 (MQ=255)

                                                                                                                                ttGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCACCAGCTCACCGCCCGTCACGCCCGTAGCGCTAAAGAGGATATCGTTCCCCCTCACCAGTTCATCGAGCGAGt       >  1:3046521/1‑140 (MQ=255)

                                                                                                                                 tGGTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCACCAGCTCACCGCCCGTCACGCCCGTAGCGCTAAAGAGGATATCGTTCCCCCTCACCAGTTCATCGAGCGAGTa      >  1:67942/1‑140 (MQ=255)

                                                                                                                                  ggTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCACCAGCTCACCGCCCGTCACGCCCGTAGCGCTAAAGAGGATATCGTTCCCCCTCACCAGTTCATCGAGCGAGTac     >  1:2946311/1‑140 (MQ=255)

                                                                                                                                   gTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCACCAGCTCACCGCCCGTCACGCCCTTAGCGCTAAAGAGGATATCGTTCCCCCTCACCAGTTCATCGAGCGAGTaca    <  1:2290071/140‑1 (MQ=255)

                                                                                                                                   gTCCGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCACCAGCTCACCGCCCGTCACGCCCGTAGCGCTAAAGAGGATATCGTTCCCCCTCACCAGTTCATCGAGCGAGTaca    <  2:1431864/140‑1 (MQ=255)

                                                                                                                                     ccGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCATCAGCTCACCGCCCGTCACGCCCGTAGCGCTAAAGAGGATATCGTTCCCCCTCACCAGTTCATCGAGCGAGTacaca  <  1:2092151/140‑1 (MQ=255)

                                                                                                                                     ccGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCACCAGCTCACCGCCCGTCACGCCCGTAGCGCTAAAGAGGATATCGTTCCCCCTCACCAGTTCATCGAGCGAGTacaca  <  2:223302/140‑1 (MQ=255)

                                                                                                                                     ccGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCACCAGCTCACCGCCCGTCACGCCCGTAGCGCTAAAGAGGATATCGTTCCCCCTCACCAGTTCATCGAGCGAGTacaca  <  2:1339956/140‑1 (MQ=255)

                                                                                                                                     ccGCTCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCACCAGCTCACCGCCCGTCACGCCCGTAGCGCTAAAGAGGATATCGTTCCCCCTCACCAGTTCATCGAGCGAGTacaca  <  2:2546745/140‑1 (MQ=255)

GCAGTTTTCATAAATGAAAATAAATTGTCCTGTGCATCCAGTTGCTCAAGCACATCATCTTCTGTCAGCGTCGCCATTGGTCTTCCGATAGATCACCATCAATGCAGGGAGTCTATTATATTACACGTTTGGTCCGCGCCGCCGATCAGTAATGTCTGCGTCCGCACCCCATTCGCCGTCTGTTGGATACCGTTCACCAGCTCACCGCCCGTCACGCCCGTAGCGCTAAAGAGGATATCGTTCCCCCTCACCAGTTCATCGAGCGAGTACACA  >  NC_000913/3075119‑3075391

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A