Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A6 F73 I1 R1	22	108.2	3720756	99.3%	3694710	138.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,123,635	G→T	R57R (CGC→CGA)	glcB ←	malate synthase G

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,123,635	0	G	T	100.0%	269.7 / NA	76	R57R (CGC→CGA)	glcB	malate synthase G
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (39/37); total (39/37)

TGGTTTCCACCGTCACGCGCTCCGGTTGCGGCACCAGGTAGCCCAGTTCACGCAGGAAAGATTTATAGGCCGCTTTATCTTTTACCGGCCCCGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAATGCGATCGCGTTCTGCCAGCAACTGACGATTTTCTGGTGCCAGATCATGAACGATCTCATCAAAATTGCGCCAGAACGCCGCAGCGTCCAGCCCTGTTCCCGGTAAAACTTCTTCATCCACAAAACGTTTAAAATTGGCGTCAA  >  NC_000913/3123499‑3123771

tGGTTTCCACCGTCACGCGCTCCGGTTGCGGCACCAGGTAGCCCAGTTCACGCAGGAAAGATTTATAGGCCGCTTTATCTTTTACCGGCCCCGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAATGCGATCTCGt                                                                                                                                       >  1:1302665/1‑140 (MQ=255)

 ggTTTCCACCGTCACGCGCTCCGGTTGCGGCACCAGGTAGCCCAGTTCACGCAGGAAAGATTTATAGGCCGCTTTATCTTTTACCGGCCCCGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAATGCGATCTCGtt                                                                                                                                      <  1:1582711/140‑1 (MQ=255)

     tCCACCGTCACGCGCTCCGGTTGCGGCACCAGGTAGCCCAGTTCACGCAGGAAAGATTTATAGGCCGCTTTATCTTTTACCGGCCCCGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAATGCGATCTCGTTCTGc                                                                                                                                  >  2:478212/1‑140 (MQ=255)

           gTCACGCGCTCCGGTTGCGGCACCAGGTAGCCCAGTTCACGCAGGAAAGATTTATAGGCCGCTTTATCTTTTACCGGCCCCGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAATGCGATCTCGTTCTGCCAGCaa                                                                                                                            >  2:1478584/1‑140 (MQ=255)

           gTCACGCGCTCCGGTTGCGGCACCAGGTAGCCCAGTTCACGCAGGAAAGATTTATAGGCCGCTTTATCTTTTACCGGCCCCGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAATGCGATCTCGTTCTGCCAGCaa                                                                                                                            >  2:816373/1‑140 (MQ=255)

            tCACGCGCTCCGGTTGCGGCACCAGGTAGCCCAGTTCACGCAGGAAAGATTTATAGGCCGCTTTATCTTTTACCGGCCCCGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAATGCGATCTCGTTCTGCCAGCAAc                                                                                                                           >  2:335798/1‑140 (MQ=255)

            tCACGCGCTCCGGTTGCGGCACCAGGTAGCCCAGTTCACGCAGGAAAGATTTATAGGCCGCTTTATCTTTTACCGGCCCCGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAATGCGATCTCGTTCTGCCAGCAAc                                                                                                                           <  1:478212/140‑1 (MQ=255)

            tCACGCGCTCCGGTTGCGGCACCAGGTAGCCCAGTTCACGCAGGAAAGATTTATAGGCCGCTTTATCTTTTACCGGCCCCGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAATGCGATCTCGTTCTGCCAGCAAc                                                                                                                           >  1:1237568/1‑140 (MQ=255)

               cgcgCTCCGGTTGCGGCACCAGGTAGCCCAGTTCACGCAGGAAAGATTTATAGGCCGCTTTATCTTTTACCGGCCCCGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAATGCGATCTCGTTCTGCCAGCAACTGa                                                                                                                        <  1:335798/140‑1 (MQ=255)

                   cTCCGGTTGCGGCACCAGGTAGCCCAGTTCACGCAGGAAAGATTTATAGGCCGCTTTATCTTTTACCGGCCCCGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAATGCGATCTCGTTCTGCCAGCAACTGACGAt                                                                                                                    <  1:682935/140‑1 (MQ=255)

                      cGGTTGCGGCACCAGGTAGCCCAGTTCACGCAGGAAAGATTTATAGGCCGCTTTATCTTTTACCGGCCCCGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAATGCGATCTCGTTCTGcc                                                                                                                                 >  2:1408191/1‑124 (MQ=255)

                      cGGTTGCGGCACCAGGTAGCCCAGTTCACGCAGGAAAGATTTATAGGCCGCTTTATCTTTTACCGGCCCCGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAATGCGATCTCGTTCTGcc                                                                                                                                 <  1:1408191/124‑1 (MQ=255)

                      cGGTTGCGGCACCAGGTAGCCCAGTTCACGCAGGAAAGATTTATAGGCCGCTTTATCTTTTACCGGCCCCGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAATGCGATCTCGTTCTGCCAGCAACTGACGAtttt                                                                                                                 >  2:347712/1‑140 (MQ=255)

                       ggTTGCGGCACCAGGTAGCCCAGTTCACGCAGGAAAGATTTATAGGCCGCTTTATCTTTTACCGGCCCCGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAATGCGATCTCGTTCTGCCAGCAACTGACGATTTTc                                                                                                                <  1:1478584/140‑1 (MQ=255)

                       ggTTGCGGCACCAGGTAGCCCAGTTCACGCAGGAAAGATTTATAGGCCGCTTTATCTTTTACCGGCCCCGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAATGCGATCTCGTTCTGCCAGCAACTGACGATTTTc                                                                                                                <  2:1578099/140‑1 (MQ=255)

                       ggTTGCGGCACCAGGTAGCCCAGTTCACGCAGGAAAGATTTATAGGCCGCTTTATCTTTTACCGGCCCCGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAATGCGATCTCGTTCTGCCAGCAACTGACGATTTTc                                                                                                                <  1:1301471/140‑1 (MQ=255)

                       ggTTGCGGCACCAGGTAGCCCAGTTCACGCAGGAAAGATTTATAGGCCGCTTTATCTTTTACCGGCCCCGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAATGCGATCTCGTTCTGCCAGCAACTGACGATTTTc                                                                                                                <  1:1702830/140‑1 (MQ=255)

                       ggTTGCGGCACCAGGTAGCCCAGTTCACGCAGGAAAGATTTATAGGCCGCTTTATCTTTTACCGGCCCCGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAATGCGATCTCGTTCTGCCAGCAACTGACGATTTTc                                                                                                                <  2:332781/140‑1 (MQ=255)

                         ttGCGGCACCAGGTAGCCCAGTTCACGCAGGAAAGATTTATAGGCCGCTTTATCTTTTACCGGCCCCGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAATGCGATCTCGTTCTGCCAGCAACTGACGATTTTCTg                                                                                                              <  2:1237568/140‑1 (MQ=255)

                          tGCGGCACCAGGTAGCCCAGTTCACGCAGGAAAGATTTATAGGCCGCTTTATCTTTTACCGGCCCCGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAATGCGATCTCGTTCTGCCAGCAACTGACGATTTTc                                                                                                                <  1:1168104/137‑1 (MQ=255)

                          tGCGGCACCAGGTAGCCCAGTTCACGCAGGAAAGATTTATAGGCCGCTTTATCTTTTACCGGCCCCGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAATGCGATCTCGTTCTGCCAGCAACTGACGATTTTc                                                                                                                >  2:1168104/1‑137 (MQ=255)

                             ggCTCCAGGTAGCCCAGTTCACGCAGGAAAGATTTATAGGCCGCTTTATCTTTTACCGGCCCCGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAATGCGATCTCGTTCTGCCAGCAACTGACGATTTTCTGGTGc                                                                                                          <  1:1810586/140‑1 (MQ=255)

                             ggCACCAGGTAGCCCAGTTCACGCAGGAAAGATTTATAGGCCGCTTTATCTTTTACCGGCCCCGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAATGCGATCTCGTTCTGCCAGCAACTGACGATTTTCTGGTGc                                                                                                          <  2:1302665/140‑1 (MQ=255)

                              gCACCAGGTAGCCCAGTTCACGCAGGAAAGATTTATAGGCCGCTTTATCTTTTACCGGCCCCGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAATGCGATCTCGTTCTGCCAGCAACTGACGATTTTCTGGTGcc                                                                                                         <  1:647586/140‑1 (MQ=255)

                               cACCAGGTAGCCCAGTTCACGCAGGAAAGATTTATAGGCCGCTTTATCTTTTACCGGCCCCGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAATGCGATCTCGTTCTGCCAGCAACTGACGATTTTCTGGTGCCa                                                                                                        <  2:1590396/140‑1 (MQ=255)

                                   aGGTAGCCCAGTTCACGCAGGAAAGATTTATAGGCTGCTTTATCTTTTACCGGCCCCGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAATGCGATCTCGTTCTGCCAGCAACTGACGATTTTCTGGTGCCAGATc                                                                                                    <  2:920983/140‑1 (MQ=255)

                                      tAGCCCAGTTCACGCAGGAAAGATTTATAGGCCGCTTTATCTTTTACCGGCCCCGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAATGCGATCTCGTTCTGCCAGCAACTGACGATTTTCTGGTGCCAGATCATg                                                                                                 >  1:354230/1‑140 (MQ=255)

                                      tAGCCCAGTTCACGCAGGAAAGATTTATAGGCCGCTTTATCTTTTACCGGCCCCGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAATGCGATCTCGTTCTGCCAGCAACTGACGATTTTCTGGTGCCAGATCATg                                                                                                 >  1:992215/1‑140 (MQ=255)

                                         cccAGTTCACGCAGGAAAGATTTATAGGCCGCTTTATCTTTTACCGGCCCCGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAATGCGATCTCGTTCTGCCAGCAACTGACGATTTTCTGGTGcc                                                                                                         >  1:1554922/1‑129 (MQ=255)

                                         cccAGTTCACGCAGGAAAGATTTATAGGCCGCTTTATCTTTTACCGGCCCCGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAATGCGATCTCGTTCTGCCAGCAACTGACGATTTTCTGGTGcc                                                                                                         <  2:1554922/129‑1 (MQ=255)

                                         cccAGTTCACGCAGGAAAGATTTATAGGCCGCTTTATCTTTTACCGGCCCCGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAATGCGATCTCGTTCTGCCAGCAACTGACGATTTTCTGGTGCCAGATCATGAAc                                                                                              <  1:393753/140‑1 (MQ=255)

                                         cccAGTTCACGCAGGAAAGATTTATAGGCCGCTTTATCTTTTACCGGCCCCGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAATGCGATCTCGTTCTGCCAGCAACTGACGATTTTCTGGTGCCAGATCATGAAc                                                                                              >  1:870926/1‑140 (MQ=255)

                                            aGTTCACGCAGGAAAGATTTATAGGCCGCTTTATCTTTTACCGGCCCCGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAATGCGATCTCGTTCTGCCAGCAACTGACGATTTTCTGGTGCCAGATCa                                                                                                   <  1:1151074/132‑1 (MQ=255)

                                            aGTTCACGCAGGAAAGATTTATAGGCCGCTTTATCTTTTACCGGCCCCGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAATGCGATCTCGTTCTGCCAGCAACTGACGATTTTCTGGTGCCAGATCa                                                                                                   >  2:1151074/1‑132 (MQ=255)

                                            aGTTCACGCAGGAAAGATTTATAGGCCGCTTTATCTTTTACCGGCCCCGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAATGCGATCTCGTTCTGCCAGCAACTGACGATTTTCTGGTGCCAGATCATGAACGAt                                                                                           <  1:914178/140‑1 (MQ=255)

                                              ttCACGCAGGAAAGATTTATAGGCCGCTTTATCTTTTACCGGCCCCGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAATGCGATCTCGTTCTGCCAGCAACTGACGATTTTCTGGTGCCAGATCATGAACGAtct                                                                                         >  2:1454322/1‑140 (MQ=255)

                                              ttCACGCAGGAAAGATTTATAGGCCGCTTTATCTTTTACCGGCCCCGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAATGCGATCTCGTTCTGCCAGCAACTGACGATTTTCTGGTGCCAGATCATGAACGAtct                                                                                         >  1:1530230/1‑140 (MQ=255)

                                              ttCACGCAGGAAAGATTTATAGGCCGCTTTATCTTTTACCGGCCCCGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAATGCGATCTCGTTCTGCCAGCAACTGACGATTTTCTGGTGCCAGATCATGAACGAtct                                                                                         >  1:966825/1‑140 (MQ=255)

                                              ttCACGCAGGAAAGATTTATAGGCCGCTTTATCTTTTACCGGCCCCGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAATGCGATCTCGTTCTGCCAGCAACTGACGATTTTCTGGTGCCAGATCATGAACGAtct                                                                                         >  2:261844/1‑140 (MQ=255)

                                              ttCACGCAGGAAAGATTTATAGGCCGCTTTATCTTTTACCGGCCCCGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAATGCGATCTCGTTCTGCCAGCAACTGACGATTTTCTGGTGCCAGATCATGAACGAtct                                                                                         >  2:1548920/1‑140 (MQ=255)

                                              ttCACGCAGGAAAGATTTATAGGCCGCTTTATCTTTTACCGGCCCCGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAATGCGATCTCGTTCTGCCAGCAACTGACGATTTTCTGGTGCCAGATCATGAACGAtct                                                                                         >  2:507417/1‑140 (MQ=255)

                                              ttCACGCAGGAAAGATTTATAGGCCGCTTTATCTTTTACCGGCCCCGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAATGCGATCTCGTTCTGCCAGCAACTGACGATTTTCTGGTGCCAGATCATGAACGAt                                                                                           >  2:1458468/1‑138 (MQ=255)

                                              ttCACGCAGGAAAGATTTATAGGCCGCTTTATCTTTTACCGGCCCCGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAATGCGATCTCGTTCTGCCAGCAACTGACGATTTTCTGGTGCCAGATCATGAACGAt                                                                                           <  1:1458468/138‑1 (MQ=255)

                                                               tataGGCCGCTTTATCTTTTACCGGCCCCGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAATGCGATCTCGTTCTGCCAGCAACTGACGATTTTCTGGTGCCAGATCATGAACGATCTCATCAAAATTGCGCCAg                                                                        >  2:614751/1‑140 (MQ=255)

                                                                 taGGCCGCTTTATCTTTTACCGGCCCCGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAATGCGATCTCGTTCTGCCAGCAACTGACGATTTTCTGGTGCCAGATCATGAACGATCTCATCAAAATTGCGCCAGaa                                                                      >  1:1532129/1‑140 (MQ=255)

                                                                      cGCTTTATCTTTTACCGGCCCCGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAATGCGATCTCGTTCTGCCAGCAACTGACGATTTTCTGGTGCCAGATCATGAACGATCTCATCAAAATTGCGCCAGAAcgccg                                                                 >  2:103134/1‑140 (MQ=255)

                                                                      cGCTTTATCTTTTACCGGCCCCGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAATGCGATCTCGTTCTGCCAGCAACTGACGATTTTCTGGTGCCAGATCATGAACGATCTCATCAAAATTGCGCCAGAAcgccg                                                                 >  2:1207131/1‑140 (MQ=255)

                                                                        cTTTATCTTTTACCGGCCCCGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAATGCGATCTCGTTCTGCCAGCAACTGACGATTTTCTGGTGCCAGATCATGAACGATCTCATCAAAATTGCGCCa                                                                         >  1:1125530/1‑130 (MQ=255)

                                                                        cTTTATCTTTTACCGGCCCCGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAATGCGATCTCGTTCTGCCAGCAACTGACGATTTTCTGGTGCCAGATCATGAACGATCTCATCAAAATTGCGCCa                                                                         <  2:1125530/130‑1 (MQ=255)

                                                                        cTTTATCTTTTACCGGCCCCGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAATGCGATCTCGTTCTGCCAGCAACTGACGATTTTCTGGTGCCAGATCATGAACGATCTCATCAAAATTGCGCCAGAACGCCGCa                                                               >  2:1806902/1‑140 (MQ=255)

                                                                        cTTTATCTTTTACCGGCCCCGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAATGCGATCTCGTTCTGCCAGCAACTGACGATTTTCTGGTGCCAGATCATGAACGATCTCATCAAAATTGCGCCAGAACGCCGCa                                                               <  2:354230/140‑1 (MQ=255)

                                                                        cTTTATCTTTTACCGGCCCCGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAATGCGATCTCGTTCTGCCAGCAACTGACGATTTTCTGGTGCCAGATCATGAACGATCTCATCAAAATTGCGCCAGAACGCCGCa                                                               <  1:507417/140‑1 (MQ=255)

                                                                        cTTTATCTTTTACCGGCCCCGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAATGCGATCTCGTTCTGCCAGCAACTGACGATTTTCTGGTGCCAGATCATGAACGATCTCATCAAAATTGCGCCAGAACGCCGCa                                                               <  2:992215/140‑1 (MQ=255)

                                                                        cTTTATCTTTTACCGGCCCCGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAATGCGATCTCGTTCTGCCAGCAACTGACGATTTTCTGGTGCCAGATCATGAACGATCTCATCAAAATTGCGCCAGAACGCCGCa                                                               <  1:103134/140‑1 (MQ=255)

                                                                             tCTTTTACCGGCCCCGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAATGCGATCTCGTTCTGCCAGCAACTGACGATTTTCTGGTGCCAGATCATGAACGATCTCATCAAAATTGCGCCAGAACGCCGCAGCGTc                                                          <  1:581564/140‑1 (MQ=255)

                                                                             tCTTTTACCGGCCCCGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAATGCGATCTCGTTCTGCCAGCAACTGACGATTTTCTGGTGCCAGATCATGAACGATCTCATCAAAATTGCGCCAGAACGCCGCAGCGTc                                                          <  1:203745/140‑1 (MQ=255)

                                                                                   aCCGGCCCCGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAATGCGATCTCGTTCTGCCAGCAACTGACGATTTTCTGGTGCCAGATCATGAACGATCTCATCAAAATTGCGCCAGAACGCCGCAGCGTCCAGccc                                                    >  1:18075/1‑140 (MQ=255)

                                                                                       gCCCCGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAATGCGATCTCGTTCTGCCAGCAACTGACGATTTTCTGGTGCCAGATCATGAACGATCTCATCAAAATTGCGCCAGAACGCCGCAGCGTCCa                                                        >  1:1751190/1‑132 (MQ=255)

                                                                                       gCCCCGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAATGCGATCTCGTTCTGCCAGCAACTGACGATTTTCTGGTGCCAGATCATGAACGATCTCATCAAAATTGCGCCAGAACGCCGCAGCGTCCa                                                        <  2:1751190/132‑1 (MQ=255)

                                                                                       gCCCCGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAATGCGATCTCGTTCTGCCAGCAACTGACGATTTTCTGGTGCCAGATCATGAACGATCTCATCAAAATTGCGCCAGAACGCCGCAGCGTCCAGCCCTGtt                                                >  2:776354/1‑140 (MQ=255)

                                                                                       gCCCCGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAATGCGATCTCGTTCTGCCAGCAACTGACGATTTTCTGGTGCCAGATCATGAACGATCTCATCAAAATTGCGCCAGAACGCCGCAGCGTCCAGCCCTGtt                                                >  1:1096381/1‑140 (MQ=255)

                                                                                        ccccGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAATGCGATCTCGTTCTGCCAGCAACTGACGATTTTCTGGTGCCAGATCATGAACGATCTCATCAAAATTGCGCCAGAACGCCGCAGCGTCCAGCCCTGTTc                                               >  2:1512173/1‑140 (MQ=255)

                                                                                          ccGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAATGCGATCTCGTTCTGCCAGCAACTGACGATTTTCTGGTGCCAGATCATGAACGATCTCATCAAAATTGCGCCAGAACGCCGCAGCGTCCAGCCCTGTTccc                                             <  2:870926/140‑1 (MQ=255)

                                                                                              aTTGCTGCGATGCCACTCATCAAGCGCTGCCTGAATGCGATCTCGTTCTGCCAGCAACTGACGATTTTCTGGTGCCAGATCATGAACGATCTCATCAAAATTGCGCCAGAACGCCGCAGCGTCCAGCCCTGTTCCCGGTa                                         <  1:261844/140‑1 (MQ=255)

                                                                                                  ctgcGATGCCACTCATCAAGCGCTGCCTGAATGCGATCTCGTTCTGCCAGCAACTGACGATTTTCTGGTGCCAGATCATGAACGATCTCATCAAAATTGCGCCAGAACGCCGCAGCGTCCAGCCCTGTTCCCGGTAAAAc                                     >  1:459088/1‑140 (MQ=255)

                                                                                                      gATGCCACTCATCAAGCGCTGCCTGAATGCGATCTCGTTCTGCCAGCAACTGACGATTTTCTGGTGCCAGATCATGAACGATCTCATCAAAATTGCGCCAGAACGCCGCAGCGTCCAGCCCTGTTCCCGGTAAAActtct                                 >  1:1186065/1‑140 (MQ=255)

                                                                                                                atcaAGCGCTGCCTGAATGCGATCTCGTTCTGCCAGCAACTGACGATTTTCTGGTGCCAGATCATGAACGATCTCATCAAAATTGCGCCAGAACGCCGCAGCGTCCAGCCCTGTTCCCGGTAAAACTTCTTCATCCACaa                       <  2:966825/140‑1 (MQ=255)

                                                                                                                  caAGCGCTGCCTGAATGCGATCTCGTTCTGCCAGCAACTGACGATTTTCTGGTGCCAGATCATGAACGATCTCATCAAAATTGCGCCAGAACGCCGCAGCGTCCAGCCCTGTTCCCGGTAAAACTTCTTCATCCACaaaa                     <  1:816373/140‑1 (MQ=255)

                                                                                                                     gcgcTGCCTGAATGCGATCTCGTTCTGCCAGCAACTGACGATTTTCTGGTGCCAGATCATGAACGATCTCATCAAAATTGCGCCAGAACGCCGCAGCGTCCAGCCCTGTTCCCGGTAAAACTTCTTCATCCACAAAACGt                  <  1:1512173/140‑1 (MQ=255)

                                                                                                                          gCCTGAATGCGATCTCGTTCTGCCAGCAACTGACGATTTTCTGGTGCCAGATCATGAACGATCTCATCAAAATTGCGCCAGAACGCCGCAGCGTCCAGCCCTGTTCCCGGTAAAACTTCTTCATCCACAAAACGTTTaaa             >  1:849172/1‑140 (MQ=255)

                                                                                                                          gCCTGAATGCGATCTCGTTCTACCAGCAACTGACGATTTTCTGGTGCCAGATCATGAACGATCTCATCAAAATTGCGCCAGAACGCCGCAGCGTCCAGCCCTGTTCCCGGTAAAACTTCTTCATCCACAAAACGTTTaaa             >  1:90748/1‑140 (MQ=255)

                                                                                                                           ccTGAATGCGATCTCGTTCTGCCAGCAACTGACGATTTTCTGGTGCCAGATCATGAACGATCTCATCAAAATTGCGCCAGAACGCCGCAGCGTCCAGCCCTGTT‑CCGGTAAAACTTCTTCATCCACAAAACGTTTAAAAt           >  2:1670557/1‑140 (MQ=255)

                                                                                                                               aaTGCGATCTCGTTCTGCCAGCAACTGACGATTTTCTGGTGCCAGATCATGAACGATCTCATCAAAATTGCGCCAGAACGCCGCAGCGTCCAGCCCTGTTCCCGGTAAAACTTCTTCATCCACAAAACGTTTAAAATTgg        >  1:490139/1‑140 (MQ=255)

                                                                                                                                  gCGATCTCGTTCTGCCAGCAACTGACGATTTTCTGGTGCCAGATCATGAACGATCTCATCAAAATTGCGCCAGAACGCCGCAGCGTCCAGCCCTGTTCCCGGTAAAACTTCTTCATCCACAAAACGTTTAAAATTGGCGt     <  1:1548920/140‑1 (MQ=255)

                                                                                                                                   cGATCTCGTTCTGCCAGCAACTGACGATTTTCTGGTGCCAGATCATGAACGATCTCATCAAAATTGCGCCAGAACGCCGCAGCGTCCAGCCCTGTTCCCGGTAAAACTTCTTCATCCACAAAACGTTTAAAATTGGCGTc    <  1:1454322/140‑1 (MQ=255)

                                                                                                                                     aTCTCGATCTGCCAGCAACTGACGATTTTCTGGTGCCAGATCATGAACGATCTCATCAAAATTGCGCCAGAACGCCGCAGCGTCCAGCCCTGTTCCCGGTAAAACTTCTTCATCCACAAAACGTTTAAAATTGGCGTCaa  >  2:719162/1‑140 (MQ=255)

TGGTTTCCACCGTCACGCGCTCCGGTTGCGGCACCAGGTAGCCCAGTTCACGCAGGAAAGATTTATAGGCCGCTTTATCTTTTACCGGCCCCGGATTGCTGCGATGCCACTCATCAAGCGCTGCCTGAATGCGATCGCGTTCTGCCAGCAACTGACGATTTTCTGGTGCCAGATCATGAACGATCTCATCAAAATTGCGCCAGAACGCCGCAGCGTCCAGCCCTGTTCCCGGTAAAACTTCTTCATCCACAAAACGTTTAAAATTGGCGTCAA  >  NC_000913/3123499‑3123771

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A