Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F73 I1 R1	27	59.0	2035004	99.3%	2020758	139.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,127,980	G→T	P14P (CCC→CCA)	glcD ←	glycolate dehydrogenase, putative FAD‑linked subunit

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,127,980	0	G	T	100.0%	294.3 / NA	82	P14P (CCC→CCA)	glcD	glycolate dehydrogenase, putative FAD‑linked subunit
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (44/38); total (44/38)

CAGTAATGGACGCGTGCGATACGCGCTCAACCCGTCACACTCGTAAGGAATGATCTCCTCATCGGTATGCAGGATCTCAAGTCCAGGGACATGCT‑‑CACGCAGTGCCATCAGTACCGATGTGCGGTCGACATCGGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGAGTAGGCTTCGCTTTGTTGTGTTGTGTGGCAGCTGATTTTTGCGCGCTGCTTCTGTGAACAGTTATTAAGCGGGCTTTTCGTTTTCGTCT  >  NC_000913/3127848‑3128112

cAGTAATGGACGCGTGCGATACGCGCTCAACCCGTCACACTCGTAAGGAATGATCTCCTCATCGGTATGCAGGATCTCAAGTCCAGGGACATGCT‑‑CACGCAGTGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAg                                                                                                                               <  2:184784/140‑1 (MQ=255)

cAGTAATGGACGCGTGCGATACGCGCTCAACCCGTCACACTCGTAAGGAATGATCTCCTCATCGGTATGCAGGATCTCAAGTCCAGGGACATGCT‑‑CACGCAGTGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAg                                                                                                                               <  1:114921/140‑1 (MQ=255)

    aaTGGACGCGTGCGATACGCGCTCAACCCGTCACACTCGTAAGGAATGATCTCCTCATCGGTATGCAGGATCTCAAGTCCAGGGACATGCT‑‑CACGCAGTGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGcc                                                                                                                           >  2:171480/1‑140 (MQ=255)

     aTGGACGCGTGCGATACGCGCTCAACCCGTCACACTCGTAAGGAATGATCTCCTCATCGGTATGCAGGATCTCAAGTCCAGGGACATGCT‑‑CACGCAGTGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCa                                                                                                                          >  1:388621/1‑140 (MQ=255)

       ggACGCGTGCGATACGCGCTCAACCCGTCACACTCGTAAGGAATGATCTCCTCATCGGTATGCAGGATCTCAAGTCCAGGGACATGCT‑‑CACGCAGTGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATc                                                                                                                        >  2:787070/1‑140 (MQ=255)

       ggACGCGTGCGATACGCGCTCAACCCGTCACACTCGTAAGGAATGATCTCCTCATCGGTATGCAGGATCTCAAGTCCAGGGACATGCT‑‑CACGCAGTGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATc                                                                                                                        <  1:787070/140‑1 (MQ=255)

          cgcgTGCGATACGCGCTCAACCCGTCACACTCGTAAGGAATGATCTCCTCATCGGTATGCAGGATCTCAAGTCCAGGGACATGCT‑‑CACGCAGTGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAg                                                                                                                     >  1:227967/1‑140 (MQ=255)

             gTGCGATACGCGCTCAACCCGTCACACTCGTAAGGAATGATCTCCTCATCGGTATGCAGGATCTCAAGTCCAGGGACATGCT‑‑CACGCAGTGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACg                                                                                                                  >  1:630391/1‑140 (MQ=255)

             gTGCGATACGCGCTCAACCCGTCACACTCGTAAGGAATGATCTCCTCATCGGTATGCAGGATCTCAAGTCCAGGGACATGCT‑‑CACGCAGTGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACg                                                                                                                  <  2:402277/140‑1 (MQ=255)

               gCGATACGCGCTCAACCCGTCACACTCGTAAGGAATGATCTCCTCATCGGTATGCAGGATCTCAAGTCCAGGGACATGCT‑‑CACGCAGTGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGct                                                                                                                <  1:637269/140‑1 (MQ=255)

                 gATACGCGCTCAACCCGTCACACTCGTAAGGAATGATCTCCTCATCGGTATGCAGGATCTCAAGTCCAGGGACATGCT‑‑CACGCAGTGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGctct                                                                                                              <  2:695915/140‑1 (MQ=255)

                  aTACGCGCTCAACCCGTCACACTCGTAAGGAATGATCTCCTCATCGGTATGCAGGATCTCAAGTCCAGGGACATGCT‑‑CACGCAGTGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCtt                                                                                                             <  1:2424/140‑1 (MQ=255)

                      gcgcTCAACCCGTCACACTCGTAAGGAATGATCTCCTCATCGGTATGCAGGATCTCAAGTCCAGGGACATGCT‑‑CACGCAGTGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTa                                                                                                         <  2:539021/140‑1 (MQ=255)

                         cTCAACCCGTCACACTCGTAAGGAATGATCTCCTCATCGGTATGCAGGATCTCAAGTCCAGGGACATGCT‑‑CACGCAGTGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACaa                                                                                                      >  1:369592/1‑140 (MQ=255)

                          tCAACCCGTCACACTCGTAAGGAATGATCTCCTCATCGGTATGCAGGATCTCAAGTCCAGGGACATGCT‑‑CACGCAGTGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAg                                                                                                     <  1:568769/140‑1 (MQ=255)

                           cAACCCGTCACACTCGTAAGGAATGATCTCCTCATCGGTATGCAGGATCTCAAGTCCAGGGACATGCT‑‑CACGCAGTGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGa                                                                                                    <  2:693253/140‑1 (MQ=255)

                           cAACCCGTCACACTCGTAAGGAATGATCTCCTCATCGGTATGCAGGATCTCAAGTCCAGGGACATGCT‑‑CACGCAGTGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGa                                                                                                    <  1:713510/140‑1 (MQ=255)

                               ccGTCACACTCGTAAGGAATGATCTCCTCATCGGTATGCAGGATCTCAAGTCCAGGGACATGCT‑‑CACGCAGTGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCt                                                                                                <  2:524019/140‑1 (MQ=255)

                               ccGTCACACTCGTAAGGAATGATCTCCTCATCGGTATGCAGGATCTCAAGTCCAGGGACATGCT‑‑CACGCAGTGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCt                                                                                                <  1:735996/140‑1 (MQ=255)

                                           tAAGGAATGATCTCCTCATCGGTATGCAGGATCTCAAGTCCAGGGACATGCT‑‑CACGCAGTGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGAGTAGGCt                                                                                    >  2:578918/1‑140 (MQ=255)

                                              ggAATGATCTCCTCATCGGTATGCAGGATCTCAAGTCCAGGGACATGCT‑‑CACGCAGTGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGAGTAGGCTTCg                                                                                 <  1:171480/140‑1 (MQ=255)

                                                aaTGATCTCCTCATCGGTATGCAGGATCTCAAGTCCAGGGACATGCT‑‑CACGCAGTGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGAGTAGGCTTCGCt                                                                               <  2:984482/140‑1 (MQ=255)

                                                  tGATCTCCTCATCGGTATGCAGGATCTCAAGTCCAGGGACATGCTCACACGCAGTGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGAGTAGGCTTCGCt                                                                               >  2:592876/1‑140 (MQ=255)

                                                  tGATCTCCTCATCGGTATGCAGGATCTCAAGTCCAGGGACATGCT‑‑CACGCAGTGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGAGTAGGCTTCGCttt                                                                             >  1:840878/1‑140 (MQ=255)

                                                  tGATCTCCTCATCGGTATGCAGGATCTCAAGTCCAGGGACATGCT‑‑CACGCAGTGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGAGTAGGCTTCGCttt                                                                             >  2:965195/1‑140 (MQ=255)

                                                   gATCTCCTCATCGGTATGCAGGATCTCAAGTCCAGGGACATGCT‑‑CACGCAGTGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGAGTAGGCTTCGCTttg                                                                            <  2:228283/140‑1 (MQ=255)

                                                   gATCTCCTCATCGGTATGCAGGATCTCAAGTCCAGGGACATGCT‑‑CACGCAGTGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGAGTAGGCTTCGCTttg                                                                            <  2:369592/140‑1 (MQ=255)

                                                   gATCTCCTCATCGGTATGCAGGATCTCAAGTCCAGGGACATGCT‑‑CACGCAGTGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGAGTAGGCTTCGCTttg                                                                            <  2:388621/140‑1 (MQ=255)

                                                        cctcATCGGTATGCAGGATCTCAAGTCCAGGGACATGCT‑‑CACGCAGTGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGAGTAGGCTTCGCTTtgttgtg                                                                       <  2:312551/140‑1 (MQ=255)

                                                          tcATCGGTATGCAGGATCTCAAGTCCAGGGACATGCT‑‑CACGCAGTGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGAGTAGGCTTCGCTTtgttgtgtt                                                                     >  1:1002836/1‑140 (MQ=255)

                                                          tcATCGGTATGCAGGATCTCAAGTCCAGGGACATGCT‑‑CACGCAGTGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGAGTAGGCTTCGCTTtgttgtgtt                                                                     >  1:369280/1‑140 (MQ=255)

                                                              cGGTATGCAGGATCTCAAGTCCAGGGACATGCT‑‑CACGCAGTGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGAGTAGGCTTCGCTTTGTtgtgttgtgt                                                                 >  1:165014/1‑140 (MQ=255)

                                                              cGGTATGCAGGATCTCAAGTCCAGGGACATGCT‑‑CACGCAGTGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGAGTAGGCTTCGCTTTGTtgtgttgtgt                                                                 >  2:373267/1‑140 (MQ=255)

                                                                gTATGCAGGATCTCAAGTCCAGGGACATGCT‑‑CACGCAGTGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGAGTAGGCTTCGCTTTGTTGTGTTGTGTgg                                                               <  2:840878/140‑1 (MQ=255)

                                                                   tGCAGGATCTCAAGTCCAGGGACATGCT‑‑CACGCAGTGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGAGTAGGCTTCGCTTTGTTGTGTTGTGTGGCAg                                                            >  1:1002141/1‑140 (MQ=255)

                                                                   tGCAGGATCTCAAGTCCAGGGACATGCT‑‑CACGCAGTGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGAGTAGGCTTCGCTTTGTTGTGTTGTGTGGCAg                                                            >  2:961225/1‑140 (MQ=255)

                                                                   tGCAGGATCTCAAGTCCAGGGACATGCT‑‑CACGCAGTGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGAGTAGGCTTCGCTTTGTTGTGTTGTGTGGCAg                                                            <  2:227284/140‑1 (MQ=255)

                                                                   tGCAGGATCTCAAGTCCAGGGACATGCT‑‑CACGCAGTGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGAGTAGGCTTCGCTTTGTTGTGTTGTGTGGCAg                                                            >  2:646455/1‑140 (MQ=255)

                                                                   tGCAGGATCTCAAGTCCAGGGACATGCT‑‑CACGCAGTGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGAGTAGGCTTCGCTTTGTTGTGTTGTGTGGCAg                                                            >  2:663363/1‑140 (MQ=255)

                                                                           ctcAAGTCCAGGGACATGCT‑‑CACGCAGTGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGAGTAGGCTTCGCTTTGTTGTGTTGTGTGGCAGCTGAtttt                                                    >  1:316231/1‑140 (MQ=255)

                                                                             cAAGTCCAGGGACATGCT‑‑CACGCAGTGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGAGTAGGCTTCGCTTTGTTGTGTTGTGTGGCAGCTGATTTTTg                                                  >  2:753920/1‑140 (MQ=255)

                                                                                gTCCAGGGACATGCT‑‑CACGCAGTGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGAGTAGGCTTCGCTTTGTTGTGTTGTGTGGCAGCTGATTTTTgcgc                                               >  1:20456/1‑140 (MQ=255)

                                                                                    aGGGACATGCT‑‑CACGCAGTGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGAGTAGGCTTCGCTTTGTTGTGTTGTGTGGCAGCTGATTTTTGCGCgctg                                           >  2:622367/1‑140 (MQ=255)

                                                                                    aGGGACATGCT‑‑CACGCAGTGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGAGTAGGCTTCGCTTTGTTGTGTTGTGTGGCAGCTGATTTTTGCGCgctg                                           <  2:165014/140‑1 (MQ=255)

                                                                                     gggACATGCT‑‑CACGCAGTGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGAGTAGGCTTCGCTTTGTTGTGTTGTGTGGCAGCTGATTTTTGCGCgctgc                                          >  1:935808/1‑140 (MQ=255)

                                                                                      ggACATGCTCACACGCAGTGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGAGTAGGCTTCGCTTTGTTGTGTTGTGTGGCAGCTGATTTTTGCGCgctg                                           <  1:592876/140‑1 (MQ=255)

                                                                                      ggACATGCT‑‑CACGCAGTGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGAGTAGGCTTCGCTTTGTTGTGTTGTGTGGCAGCTGATTTTTGCGCgctgct                                         >  2:117664/1‑140 (MQ=255)

                                                                                           tGCT‑‑CACGCAGTGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGAGTAGGCTTCGCTTTGTTGTGTTGTGTGGCAGCTGATTTTTGCGCGCTGCTTCtgt                                    >  1:616439/1‑140 (MQ=255)

                                                                                           tGCT‑‑CACGCAGTGCCATCAGTACCGATGTGCGGTCGACATCGGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGTTGACGCAGAGCTTTGGCGCGGTGAATGGCGGCTGAGTTTTGCGAGCTGCTTCtgt                                    >  2:622040/1‑140 (MQ=255)

                                                                                              t‑‑CACGCAGTGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGAGTAGGCTTCGCTTTGTTGTGTTGTGTGGCAGCTGATTTTTGCGCGCTGCTTCTGTGaa                                 <  1:713093/140‑1 (MQ=255)

                                                                                              t‑‑CACGCAGTGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGAGTAGGCTTCGCTTTGTTGTGTTGTGTGGCAGCTGATTTTTGCGCGCTGCTTCTGTGaa                                 <  2:495078/140‑1 (MQ=255)

                                                                                              t‑‑CACGCAGTGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGAGTAGGCTTCGCTTTGTTGTGTTGTGTGGCAGCTGATTTTTGCGCGCTGCTTCTGTGaa                                 <  1:117664/140‑1 (MQ=255)

                                                                                              t‑‑CACGCAGTGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGAGTAGGCTTCGCTTTGTTGTGTTGTGTGGCAGCTGATTTTTGCGCGCTGCTTCTGTGaa                                 <  1:317579/140‑1 (MQ=255)

                                                                                              t‑‑CACGCAGTGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGAGTAGGCTTCGCTTTGTTGTGTTGTGTGGCAGCTGATTTTTGCGCGCTGCTTCTGTGaa                                 <  2:295779/140‑1 (MQ=255)

                                                                                              t‑‑CACGCAGTGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGAGTAGGCTTCGCTTTGTTGTGTTGTGTGGCAGCTGATTTTTGCGCGCTGCTTCTGTGaa                                 <  1:965195/140‑1 (MQ=255)

                                                                                              t‑‑CACGCAGTGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGAGTAGGCTTCGCTTTGTTGTGTTGTGTGGCAGCTGATTTTTGCGCGCTGCTTCTGTGaa                                 <  2:1002836/140‑1 (MQ=255)

                                                                                                    gCAGTGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGAGTAGGCTTCGCTTTGTTGTGTTGTGTGGCAGCTGATTTTTGCGCGCTGCTTCTGTGAAc                                >  1:87877/1‑137 (MQ=255)

                                                                                                    gCAGTGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGAGTAGGCTTCGCTTTGTTGTGTTGTGTGGCAGCTGATTTTTGCGCGCTGCTTCTGTGAAc                                <  2:87877/137‑1 (MQ=255)

                                                                                                    gCAGTGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGAGTAGGCTTCGCTTTGTTGTGTTGTGTGGCAGCTGATTTTTGCGCGCTGCTTCTGTGAACAGt                             >  1:159736/1‑140 (MQ=255)

                                                                                                    gCAGTGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGAGTAGGCTTCGCTTTGTTGTGTTGTGTGGCAGCTGATTTTTGCGCGCTGCTTCTGTGAACAGt                             >  1:815290/1‑140 (MQ=255)

                                                                                                       gTGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGAGTAGGCTTCGCTTTGTTGTGTTGTGTGGCAGCTGATTTTTGCGCGCTGCTTCTGTGAAc                                >  2:787717/1‑134 (MQ=255)

                                                                                                       gTGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGAGTAGGCTTCGCTTTGTTGTGTTGTGTGGCAGCTGATTTTTGCGCGCTGCTTCTGTGAAc                                <  1:787717/134‑1 (MQ=255)

                                                                                                        tGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGAGTAGGCTTCGCTTTGTTGTGTTGTGTGGCAGCTGATTTTTGCGCGCTGCTTCTGTGaa                                 <  2:154415/132‑1 (MQ=255)

                                                                                                        tGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGAGTAGGCTTCGCTTTGTTGTGTTGTGTGGCAGCTGATTTTTGCGCGCTGCTTCTGTGaa                                 >  2:634141/1‑132 (MQ=255)

                                                                                                        tGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGAGTAGGCTTCGCTTTGTTGTGTTGTGTGGCAGCTGATTTTTGCGCGCTGCTTCTGTGaa                                 >  1:154415/1‑132 (MQ=255)

                                                                                                        tGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGAGTAGGCTTCGCTTTGTTGTGTTGTGTGGCAGCTGATTTTTGCGCGCTGCTTCTGTGaa                                 <  1:634141/132‑1 (MQ=255)

                                                                                                        tGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGAGTAGGCTTCGCTTTGTTGTGTTGTGTGGCAGCTGATTTTTGCGCGCTGCTTCTGTGAAc                                >  2:712261/1‑133 (MQ=255)

                                                                                                        tGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGAGTAGGCTTCGCTTTGTTGTGTTGTGTGGCAGCTGATTTTTGCGCGCTGCTTCTGTGAAc                                <  1:712261/133‑1 (MQ=255)

                                                                                                        tGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGAGTAGGCTTCGCTTTGTTGTGTTGTGTGGCAGCTGATTTTTGCGCGCTGCTTCTGTGAACAGttatt                         >  1:280160/1‑140 (MQ=255)

                                                                                                        tGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGAGTAGGCTTCGCTTTGTTGTGTTGTGTGGCAGCTGATTTTTGCGCGCTGCTTCTGTGAACAGttatt                         >  2:527639/1‑140 (MQ=255)

                                                                                                        tGCCATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGAGTAGGCTTCGCTTTGTTGTGTTGTGTGGCAGCTGATTTTTGCGCGCTGCTTCTGTGAACAGttatt                         >  2:382101/1‑140 (MQ=255)

                                                                                                          ccATCAGTACCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGAGTAGGCTTCGCTTTGTTGTGTTGTGTGGCAGCTGATTTTTGCGCGCTGCTTCTGTGAACAGTTATTaa                       >  1:552749/1‑140 (MQ=255)

                                                                                                                  aCCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGAGTAGGCTTCGCTTTGTTGTGTTGTGTGGCAGCTGATTTTTGCGCGCTGCTTCTGTGAACAGTTATTAAGCGGGCtt               >  1:805203/1‑140 (MQ=255)

                                                                                                                  aCCGATGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGAGTAGGCTTCGCTTTGTTGTGTTGTGTGGCAGCTGATTTTTGCGCGCTGCTTCTGTGAACAGTTATTAAGCGGGCtt               >  2:324938/1‑140 (MQ=255)

                                                                                                                      aTGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGAGTAGGCTTCGCTTTGTTGTGTTGTGTGGCAGCTGATTTTTGCGCGCTGCTTCTGTGAACAGTTATTAAGCGGGCttttcg           >  2:658756/1‑140 (MQ=255)

                                                                                                                      aTGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGAGTAGGCTTCGCTTTGTTGTGTTGTGTGGCAGCTGATTTTTGCGCGCTGCTTCTGTGAACAGTTATTAAGCGGGCttttcg           >  1:982870/1‑140 (MQ=255)

                                                                                                                      aTGTGCGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGAGTAGGCTTCGCTTTGTTGTGTTGTGTGGCAGCTGATTTTTGCGCGCTGCTTCTGTGAACAGTTATTAAGCGGGCttttcg           >  1:281387/1‑140 (MQ=255)

                                                                                                                         tgCGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGAGTAGGCTTCGCTTTGTTGTGTTGTGTGGCAGCTGATTTTTGCGCGCTGCTTCTGTGAACAGTTATTAAGCGGGCttttcgttt        <  2:616439/140‑1 (MQ=255)

                                                                                                                           cGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGAGTAGGCTTCGCTTTGTTGTGTTGTGTGGCAGCTGATTTTTGCGCGCTGCTTCTGTGAACAGTTATTaa                       >  1:194944/1‑123 (MQ=255)

                                                                                                                           cGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGAGTAGGCTTCGCTTTGTTGTGTTGTGTGGCAGCTGATTTTTGCGCGCTGCTTCTGTGAACAGTTATTaa                       <  2:194944/123‑1 (MQ=255)

                                                                                                                           cGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGAGTAGGCTTCGCTTTGTTGTGTTGTGTGGCAGCTGATTTTTGCGCGCTGCTTCTGTGAACAGTTATTAAGCGGGCttttcgttttc      >  1:135434/1‑140 (MQ=255)

                                                                                                                           cGGTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGAGTAGGCTTCGCTTTGTTGTGTTGTGTGGCAGCTGATTTTTGCGCGCTGCTTCTGTGAACAGTTATTAAGCGGGCttttcgttttc      >  1:720836/1‑140 (MQ=255)

                                                                                                                            ggTCGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGAGTAGGCTTCGCTTTGTTGTGTTGTGTGGCAGCTGATTTTTGCGCGCTGCTTCTGTGAACAGTTATTAAGCGGGCttttcgttttcg     <  2:281387/140‑1 (MQ=255)

                                                                                                                               cGACATCTGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGAGTAGGCTTCGCTTTGTTGTGTTGTGTGGCAGCTGATTTTTGCGCGCTGCTTCTGTGAACAGTTATTAAGCGGGCTTTTCGTTTTCGTCt  <  2:280160/140‑1 (MQ=255)

CAGTAATGGACGCGTGCGATACGCGCTCAACCCGTCACACTCGTAAGGAATGATCTCCTCATCGGTATGCAGGATCTCAAGTCCAGGGACATGCT‑‑CACGCAGTGCCATCAGTACCGATGTGCGGTCGACATCGGGTAAAGCGCCATCAAGACGCTCTTCGTACAAGATGCTCATGAGTAGGCTTCGCTTTGTTGTGTTGTGTGGCAGCTGATTTTTGCGCGCTGCTTCTGTGAACAGTTATTAAGCGGGCTTTTCGTTTTCGTCT  >  NC_000913/3127848‑3128112

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A