Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A12 F73 I1 R1 28 94.5 3320338 99.3% 3297095 139.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,295,564 C→A G57G (GGC→GGA)  yraN → UPF0102 family protein YraN

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,295,5640CA100.0% 385.7 / NA 109G57G (GGC→GGA) yraNUPF0102 family protein YraN
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (57/52);  total (57/52)

Only 100 of 110 total aligned reads displayed.

CGTCAGTTAACCACCAAACAGACCGGCGATGCGTGGGAAGCACAAGCGCGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGCCGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGACCCGCAGCAAACAACACAAATTATTACAGACTGCCCGCTTGTGGCTCGCGCGTCATAATGGGAGT  >  NC_000913/3295427‑3295699
                                                                                                                                         |                                                                                                                                       
cGTCAGTTAACCACCAAACAGACCGGCGATGCGTGGGAAGCACAAGCGCGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACg                                                                                                                                       >  2:1310630/1‑140 (MQ=255)
 gTCAGTTAACCACCAAACAGACCGGCGATGCGTGGGAAGCACAAGCGCGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACgg                                                                                                                                      <  2:1098641/140‑1 (MQ=255)
    aGTTAACCACCAAACAGACCGGCGATGCGTGGGAAGCACAAGCGCGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACGGacc                                                                                                                                   <  2:864188/140‑1 (MQ=255)
      ttAACCACCAAACAGACCGGCGATGCGTGGGAAGCACAAGCGCGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACGGaccac                                                                                                                                 >  2:985845/1‑140 (MQ=255)
        aaCCACCAAACAGACCGGCGATGCGTGGGAAGCACAAGCGCGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACGGAccacca                                                                                                                               >  1:555743/1‑140 (MQ=255)
         accaccAAACAGACCGGCGATGCGTGGGAAGCACAAGCGCGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACGGACCACCAt                                                                                                                              >  2:302030/1‑140 (MQ=255)
              caAACAGACCGGCGATGCGTGGGAAGCACAAGCGCGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACGGACCACCATTTTTg                                                                                                                         >  2:315023/1‑140 (MQ=255)
              caAACAGACCGGCGATGCGTGGGAAGCACAAGCGCGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACGGACCACCATTTTTg                                                                                                                         >  1:986303/1‑140 (MQ=255)
              caAACAGACCGGCGATGCGTGGGAAGCACAAGCGCGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACGGACCACCATTTTTg                                                                                                                         <  1:988294/140‑1 (MQ=255)
               aaaCAGACCGGCGATGCGTGGGAAGCACAAGCGCGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACGGACCACCATTTTTGt                                                                                                                        <  2:714604/140‑1 (MQ=255)
               aaaCAGACCGGCGATGCGTGGGAAGCACAAGCGCGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACGGACCACCATTTTTGt                                                                                                                        <  2:872995/140‑1 (MQ=255)
                aaCAGACCGGCGATGCGTGGGAAGCACAAGCGCGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACg                                                                                                                                       <  1:1157802/124‑1 (MQ=255)
                aaCAGACCGGCGATGCGTGGGAAGCACAAGCGCGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACGGACCACCATTTTTGTc                                                                                                                       <  1:588595/140‑1 (MQ=255)
                aaCAGACCGGCGATGCGTGGGAAGCACAAGCGCGTAGCTGGCTGGAAGGCAAAGGACTGCGGTTTCTCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTCAAGGACGGACCACCATTTTTGTc                                                                                                                       >  2:754065/1‑140 (MQ=255)
                 aCAGACCGGCGATGCGTGGGAAGCACAAGCGCGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACGGACCACCATTTTTGTCg                                                                                                                      <  2:1101405/140‑1 (MQ=255)
                    gACCGGCGATGCGTGGGAAGCACAAGCGCGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACGGACCACCATTTTTGTCGAgg                                                                                                                   <  1:1310630/140‑1 (MQ=255)
                    gACCGGCGATGCGTGGGAAGCACAAGCGCGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACGGACCACCATTTTTGTCGAgg                                                                                                                   <  2:1193756/140‑1 (MQ=255)
                     aCCGGCGATGCGTGGGAAGCACAAGCGCGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACGGACCACCATTTTTGTCGAGGt                                                                                                                  >  1:1362979/1‑140 (MQ=255)
                     aCCGGCGATGCGTGGGAAGCACAAGCGCGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACGGACCACCATTTTTGTCGAGGt                                                                                                                  >  2:871104/1‑140 (MQ=255)
                        ggCGATGCGTGGGAAGCACAAGCGCGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGCGATCGATCTGATAATGCGTGAAGGACGGACCACCATTTTTGTCGAGGTACg                                                                                                               >  1:1273721/1‑140 (MQ=255)
                        ggCGATGCGTGGGAAGCACAAGCGCGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACGGACCACCATTTTTGTCGAGGTACg                                                                                                               >  1:692194/1‑140 (MQ=255)
                         gCGATGCGTGGGAAGCACAAGCGCGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACGGACCACCATTTTTGTCGAGGTACGc                                                                                                              >  1:1070721/1‑140 (MQ=255)
                          cGATGCGTGGGAAGCACAAGCGCGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACGGACCACCATTTTTGTCGAGGTACGCt                                                                                                             >  2:939555/1‑140 (MQ=255)
                            aTGCGTGGGAAGCACAAGCGCGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACGGACCACCATTTTTGTCGAGGTACGCTAt                                                                                                           >  1:577602/1‑140 (MQ=255)
                            aTGCGTGGGAAGCACAAGCGCGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACGGACCACCATTTTTGTCGAGGTACGCTAt                                                                                                           >  1:781011/1‑140 (MQ=255)
                                      aGCACAAGCGCGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTg                                                                                                 <  1:55139/140‑1 (MQ=255)
                                      aGCACAAGCGCGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTg                                                                                                 <  1:256353/140‑1 (MQ=255)
                                        cacaAGCGCGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTgcg                                                                                               >  2:717710/1‑140 (MQ=255)
                                         acaAGCGCGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTgcgc                                                                                              >  1:266919/1‑140 (MQ=255)
                                         acaAGCGCGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTgcgc                                                                                              >  1:449608/1‑140 (MQ=255)
                                          caAGCGCGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCt                                                                                             <  2:1070721/140‑1 (MQ=255)
                                            aGCGCGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCttt                                                                                           >  1:1190768/1‑140 (MQ=255)
                                                cgTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATgg                                                                                       >  2:547913/1‑140 (MQ=255)
                                                  tCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATggcg                                                                                     >  1:41172/1‑140 (MQ=255)
                                                  tCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATggcg                                                                                     <  1:315023/140‑1 (MQ=255)
                                                  tCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATggcg                                                                                     >  2:1489121/1‑140 (MQ=255)
                                                      tggctggAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGgcggcgc                                                                                 <  2:310030/140‑1 (MQ=255)
                                                            gAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGc                                                                           <  2:1660048/140‑1 (MQ=255)
                                                                  aaaGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAgtgt                                                                     >  1:1510607/1‑140 (MQ=255)
                                                                  aaaGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAgtgt                                                                     >  2:1063519/1‑140 (MQ=255)
                                                                  aaaGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAgtgt                                                                     >  1:354725/1‑140 (MQ=255)
                                                                  aaaGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAgtgt                                                                     >  2:28038/1‑140 (MQ=255)
                                                                    aGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGa                                                                   >  1:704201/1‑140 (MQ=255)
                                                                       aCTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGAccc                                                                >  1:1058326/1‑140 (MQ=255)
                                                                               ttATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGACCCGCAGCaaa                                                        <  1:146380/140‑1 (MQ=255)
                                                                                tATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGACCCGCAGCAaac                                                       >  1:60302/1‑140 (MQ=255)
                                                                                    gccgcTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGACCCGCAGCAAacaaca                                                   <  2:415391/140‑1 (MQ=255)
                                                                                    gccgcTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGACCCGCAGCAAacaaca                                                   <  1:500041/140‑1 (MQ=255)
                                                                                     ccgcTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGACCCGCAGCAAACAacac                                                  >  1:1177615/1‑140 (MQ=255)
                                                                                      cgcTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGACCCGCAGCAAACAAcaca                                                 <  1:1630107/140‑1 (MQ=255)
                                                                                      cgcTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGACCCGCAGCAAACAAcaca                                                 <  1:302030/140‑1 (MQ=255)
                                                                                       gcTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGACCCGCAGCAAACAACACaa                                                >  1:420137/1‑140 (MQ=255)
                                                                                        cTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGACCCGCAGCAAACAACACaaa                                               >  1:738144/1‑140 (MQ=255)
                                                                                        cTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGACCCGCAGCAAACAACACaaa                                               <  2:926992/140‑1 (MQ=255)
                                                                                        cTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGACCCGCAGCAAACAACACaaa                                               <  2:1324038/140‑1 (MQ=255)
                                                                                        cTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGACCCGCAGCAAACAACACaaa                                               <  1:1153020/140‑1 (MQ=255)
                                                                                                aaCGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACGTACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGACCCGCAGCAAacaaca                                                   <  2:63111/128‑1 (MQ=255)
                                                                                                aaCGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGACCCGCAGCAAacaaca                                                   >  1:140937/1‑128 (MQ=255)
                                                                                                aaCGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGACCCGCAGCAAacaaca                                                   <  2:140937/128‑1 (MQ=255)
                                                                                                aaCGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGACCCGCAGCAAacaaca                                                   >  1:63111/1‑128 (MQ=255)
                                                                                                aaCGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGACCCGCAGCAAACAACACaaa                                               >  1:874693/1‑132 (MQ=255)
                                                                                                aaCGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGACCCGCAGCAAACAACACaaa                                               <  2:874693/132‑1 (MQ=255)
                                                                                                     gCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGACCCGCAGCAAACAACACAAATTATTACAGACTg                                  >  1:264081/1‑140 (MQ=255)
                                                                                                       gTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGACCCGCAGCAAACAACACAAATTATTACAGACTGcc                                <  1:547913/140‑1 (MQ=255)
                                                                                                       gTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGACCCGCAGCAAACAACACAAATTATTACAGACTGcc                                <  2:620165/140‑1 (MQ=255)
                                                                                                       gTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGACCCGCAGCAAACAACACAAATTATTACAGACTGcc                                <  2:1225272/140‑1 (MQ=255)
                                                                                                       gTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGACCCGCAGCAAACAACACAAATTATTACAGACTGcc                                <  1:1533891/140‑1 (MQ=255)
                                                                                                       gTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGACCCGCAGCAAACAACACAAATTATTACAGACTGcc                                >  2:443760/1‑140 (MQ=255)
                                                                                                       gTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGACCCGCAGCAAACAACACAAATTATTACAGACTGcc                                <  2:264081/140‑1 (MQ=255)
                                                                                                       gTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGACCCGCAGCAAACAACACAAATTATTACAGACTGcc                                <  1:1554806/140‑1 (MQ=255)
                                                                                                       gTGGCGGCGAGATCGATCTGATAATGCGTGAAGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGACCCGCAGCAAACAACACAAATTATTACAGACTGcc                                <  1:1063519/140‑1 (MQ=255)
                                                                                                             gcgAGATCGATCTGATAATGCGTGAAGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCCGCCAGCGTGGCCCGCACCAAACAACACAAATTATTACAAACTGCCCGCTtg                          >  2:1534038/1‑140 (MQ=255)
                                                                                                                       tcTGATAATGCGTGAAGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGACCCGCAGCAAACAACACAAATTATTACAGACTGCCCGCTTGTGGCTcgcgc                <  1:1024334/140‑1 (MQ=255)
                                                                                                                         tGATAATGCGTGAAGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGACCCGCAGCAAACAACACAAATTATTACAGACTGCCCGCTTGTGGCTCGCGCGt              <  1:717710/140‑1 (MQ=255)
                                                                                                                               tGCGTGAAGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGACCCGCAGCAAACAACACAAATTATTACAGACTGCCCGCTTGTGGCTCGCGCGTCATAAt        <  1:248786/140‑1 (MQ=255)
                                                                                                                                gCGTGAAGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGACCCGCAGCAAACAACACAAATTATTACAGACTGCCCGCTTGTGGCTCGCGCGTCATAATg       <  1:1567870/140‑1 (MQ=255)
                                                                                                                                 cGTGAAGGACGGATCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGACCCGCAGCAAACAACACAAATTATTACAGACTGCCCGCTTGTGGCTCGCGCGt              <  1:64154/132‑1 (MQ=255)
                                                                                                                                 cGTGAAGGACGGATCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGACCCGCAGCAAACAACACAAATTATTACAGACTGCCCGCTTGTGGCTCGCGCGt              >  2:64154/1‑132 (MQ=255)
                                                                                                                                 cGTGAAGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGTGCGGCAGCCAGTGTGACCCGCAGCAAACAACACAAATTATTACAGACTGCCCGCTTGTGGCTCGCGCGTCaaaaaag      >  1:809983/1‑137 (MQ=255)
                                                                                                                                 cGTGAAGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGACCCGCAGCAAACAACACAAATTATTACAGACTGCCCGCTTGTGGCTCGCGCGTCATAATgg      >  2:851088/1‑140 (MQ=255)
                                                                                                                                 cGTGAAGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGACCCGCAGCAAACAACACAAATTATTACAGACTGCCCGCTTGTGGCTCGCGCGGCCTAATgg      >  2:377687/1‑140 (MQ=255)
                                                                                                                                 cGTGAAGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGACCCGCAGCAAACAACACAAATTATTACAGACTGCCCGCTTGTGGCTCGCGCGGCATAATgg      >  1:33812/1‑140 (MQ=255)
                                                                                                                                 cGTGAAGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGACCCGCAGCAAACAACACAAATTATTACAGACTGCCCGCTTGTGGCTCGCGCGGCATAATgg      >  1:474750/1‑140 (MQ=255)
                                                                                                                                 cGTGAAGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGACCCGCAGCAAACAACACAAATTATTACAGACTGCCCGCTTGTGGCTCCCGCGGCACAAAgg      >  2:246079/1‑140 (MQ=255)
                                                                                                                                 cGTGAAGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGACCCGCAGCAAACAACACAAATTATTACAGACTGCCCGCTTGTGGCTCCCCCGGCAttaatg      >  2:498062/1‑135 (MQ=255)
                                                                                                                                  gTGAAGGACGGACCACCATTTTTTTCGAGGTACGCTATCGCCGCTCTCAGCTTTAAGGCGGGGCGGCAGCCAGTGTGTCCCGCCGTATACAACACAAATTATTACAGACTGCCCGCTTGTGGCTGGCGCGTCATAATggg     <  2:809983/140‑1 (MQ=255)
                                                                                                                                  gTGAAGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGACCCGCAGCAAACAACACAAATTATTACAGACTGCCCGCTTGTGGCTCGCGCGTCATAATggg     <  2:1028397/140‑1 (MQ=255)
                                                                                                                                  gTGAAGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGACCCGCAGCAAACAACACAAATTATTACAGACTGCCCGCTTGTGGCTCGCGCGTCATAATggg     <  1:851088/140‑1 (MQ=255)
                                                                                                                                  gTGAAGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGACCCGCAGCAAACAACACAAATTATTACAGACTGCCCGCTTGTGGCTCGCGCGTCATAATggg     <  1:939555/140‑1 (MQ=255)
                                                                                                                                  gTGAAGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGACCCGCAGCAAACAACACAAATTATTACAGACTGCCCGCTTGTGGCTCGCGCGTCATAATggg     <  1:1489121/140‑1 (MQ=255)
                                                                                                                                  gTGAAGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGACCCGCAGCAAACAACACAAATTATTACAGACTGCCCGCTTGTGGCTCGCGCGTCATAATggg     <  2:704201/140‑1 (MQ=255)
                                                                                                                                  gTGAAGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGACCCGCAGCAAACAACACAAATTATTACAGACTGCCCGCTTGTGGCTCGCGCGTCATAATggg     <  2:555743/140‑1 (MQ=255)
                                                                                                                                  gTGAAGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGACCCGCAGCAAACAACACAAATTATTACAGACTGCCCGCTTGTGGCTCGCGCGTCATAATggg     <  2:33812/140‑1 (MQ=255)
                                                                                                                                   tGAAGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGACCCGCAGCAAACAACACAAATTATTACAGACTGCCCGCTTGTGGCTCGCGCGTCATAATggg     <  1:926196/139‑1 (MQ=255)
                                                                                                                                   tGAAGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGACCCGCAGCAAACAACACAAATTATTACAGACTGCCCGCTTGTGGCTCGCGCGTCATAATggg     >  2:926196/1‑139 (MQ=255)
                                                                                                                                     aaGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGACCCGCAGCAAACAACACAAATTATTACAGACTGCCCGCTTGTGGCTcg                   >  2:342132/1‑123 (MQ=255)
                                                                                                                                     aaGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGACCCGCAGCAAACAACACAAATTATTACAGACTGCCCGCTTGTGGCTcg                   <  1:342132/123‑1 (MQ=255)
                                                                                                                                     aaGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGACCCGCAGCAAACAACACAAATTATTACAGACTGCCCGCTTGTGGCTCGCGCGTCATAATGGGAGt  >  1:548093/1‑140 (MQ=255)
                                                                                                                                     aaGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGACCCGCAGCAAACAACACAAATTATTACAGACTGCCCGCTTGTGGCTCGCGCGTCATAATGGGAGt  >  1:1213541/1‑140 (MQ=255)
                                                                                                                                     aaGGACGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGACCCGCAGCAAACAACACAAATTATTACAGACTGCCCGCTTGTGGCTCCCGCGGCATAATGGGAgg  >  2:1637618/1‑139 (MQ=255)
                                                                                                                                         |                                                                                                                                       
CGTCAGTTAACCACCAAACAGACCGGCGATGCGTGGGAAGCACAAGCGCGTCGCTGGCTGGAAGGCAAAGGACTGCGGTTTATCGCCGCTAACGTGAACGAGCGTGGCGGCGAGATCGATCTGATAATGCGTGAAGGCCGGACCACCATTTTTGTCGAGGTACGCTATCGCCGCTCTGCGCTTTATGGCGGCGCGGCAGCCAGTGTGACCCGCAGCAAACAACACAAATTATTACAGACTGCCCGCTTGTGGCTCGCGCGTCATAATGGGAGT  >  NC_000913/3295427‑3295699

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A