Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A12 F73 I1 R1	28	94.5	3320338	99.3%	3297095	139.2

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,366,860	G→T	pseudogene (106/175 nt)	yhcE →	putative uncharacterized protein YhcE

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,366,860	0	G	T	100.0%	534.3 / NA	147	pseudogene (106/175 nt)	yhcE	putative uncharacterized protein YhcE
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (83/64); total (83/64)

Only 100 of 149 total aligned reads displayed.

TCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTTCCCCCAATAATTGGCTGGTGTTTATGCAAAATGGTCAAGAAGTGGTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAAGGATGAAGGGGAACTAACCGACATGACAGATATTACAGGCAATCTGACGGTCCTGGTGGAGGCAAAATGAACAATGTAAAATTACTGATTGCCGGAAGTGCCTTTTTTGCCATGTCAGCGCAAGCCGCTGATAGA  >  NC_000913/3366723‑3366994

   tatCAGGGACTTGTTCGCACCTTCCTTAGTACTTCCCCCAATAATTGGCTGGTGTTTATGCAAAATGGTCAAGAAGTGGTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGa                                                                                                                                      >  1:456970/1‑137 (MQ=255)

    atCAGGGACTTGTTCGCACCTTCCTTAGTACTTCCCCCAATAATTGGCTGGTGTTTATGCAAAATGGTCAAGAAGTGGTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGaa                                                                                                                                  >  1:1640628/1‑140 (MQ=255)

        gggACTTGTTCGCACCTTCCTTAGTACTTCCCCCAATAATTGGCTGGTGTTTATGCAAAATGGTCAAGAAGTGGTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGa                                                                                                                                      >  1:1312226/1‑132 (MQ=255)

        gggACTTGTTCGCACCTTCCTTAGTACTTCCCCCAATAATTGGCTGGTGTTTATGCAAAATGGTCAAGAAGTGGTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAg                                                                                                                                 >  2:1279604/1‑137 (MQ=255)

        gggACTTGTTCGCACCTTCCTTAGTACTTCCCCCAATAATTGGCTGGTGTTTATGCAAAATGGTCAAGAAGTGGTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAg                                                                                                                                 <  1:1279604/137‑1 (MQ=255)

         ggACTTGTTCGCACCTTCCTTAGTACTTCCCCCAATAATTGGCTGGTGTTTATGCAAAATGGTCAAGAAGTGGTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAGGGGa                                                                                                                             >  1:158715/1‑140 (MQ=255)

            cTTGTTCGCACCTTCCTTAGTACTTCCCCCAATAATTGGCTGGTGTTTATGCAAAATGGTCAAGAAGTGGTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAGGGGAACt                                                                                                                          >  2:1116702/1‑140 (MQ=255)

            cTTGTTCGCACCTTCCTTAGTACTTCCCCCAATAATTGGCTGGTGTTTATGCAAAATGGTCAAGAAGTGGTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAGGGGAACt                                                                                                                          >  1:1251964/1‑140 (MQ=255)

            cTTGTTCGCACCTTCCTTAGTACTTCCCCCAATAATTGGCTGGTGTTTATGCAAAATGGTCAAGAAGTGGTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAGGGGAACt                                                                                                                          >  1:248911/1‑140 (MQ=255)

                ttCGCACCTTCCTTAGTACTTCCCCCAATAATTGGCTGGTGTTTATGCAAAATGGTCAAGAAGTGGTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAAcc                                                                                                                      <  2:432395/140‑1 (MQ=255)

                  cGCACCTTCCTTAGTACTTCCCCCAATAATTGGCTGGTGTTTATGCAAAATGGTCAAGAAGTGGTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGa                                                                                                                    <  2:672109/140‑1 (MQ=255)

                     aCCTTCCTTAGTACTTCCCCCAATAATTGGCTGGTGTTTATGCAAAATGGTCAAGAAGTGGTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACAt                                                                                                                 <  2:1405940/140‑1 (MQ=255)

                      ccttccttAGTACTTCCCCCAATAATTGGCTGGTGTTTATGCAAAATGGTCAAGAAGTGGTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATg                                                                                                                <  2:1508420/140‑1 (MQ=255)

                      ccttccttAGTACTTCCCCCAATAATTGGCTGGTGTTTATGCAAAATGGTCAAGAAGTGGTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATg                                                                                                                <  2:337559/140‑1 (MQ=255)

                      ccttccttAGTACTTCCCCCAATAATTGGCTGGTGTTTATGCAAAATGGTCAAGAAGTGGTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATg                                                                                                                <  1:347825/140‑1 (MQ=255)

                       cttccttAGTACTTCCCCCAATAATTGGCTGGTGTTTATGCAAAATGGTCAAGAAGTGGTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGa                                                                                                               >  1:6433/1‑140 (MQ=255)

                        ttccttAGTACTTCCCCCAATAATTGGCTGGTGTTTATGCAAAATGGTCAAGAAGTGGTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGAc                                                                                                              <  1:1425059/140‑1 (MQ=255)

                         tccttAGTACTTCCCCCAATAATTGGCTGGTGTTTATGCAAAATGGTCAAGAAGTGGTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACa                                                                                                             >  1:130081/1‑140 (MQ=255)

                          ccttAGTACTTCCCCCAATAATTGGCTGGTGTTTATGCAAAATGGTCAAGAAGTGGTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAg                                                                                                            >  2:51708/1‑140 (MQ=255)

                                  cTTCCCCCAATAATTGGCTGGTGTTTATGCAAAATGGTCAAGAAGTGGTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACa                                                                                                    >  1:1147684/1‑140 (MQ=255)

                                   ttCCCCCAATAATTGGCTGGTGTTTATGCAAAATGGTCAAGAAGTGGTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAg                                                                                                   >  2:858739/1‑140 (MQ=255)

                                   ttCCCCCAATAATTGGCTGGTGTTTATGCAAAATGGTCAAGAAGTGGTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAg                                                                                                   >  2:344811/1‑140 (MQ=255)

                                   ttCCCCCAATAATTGGCTGGTGTTTATGCAAAATGGTCAAGAAGTGGTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAg                                                                                                   >  1:170180/1‑140 (MQ=255)

                                   ttCCCCCAATAATTGGCTGGTGTTTATGCAAAATGGTCAAGAAGTGGTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAg                                                                                                   >  1:780837/1‑140 (MQ=255)

                                   ttCCCCCAATAATTGGCTGGTGTTTATGCAAAATGGTCAAGAAGTGGTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAg                                                                                                   >  2:733468/1‑140 (MQ=255)

                                   ttCCCCCAATAATTGGCTGGGGTTTATGCAAAATGGTCAAGAAGGGGTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAg                                                                                                   >  2:108265/1‑140 (MQ=255)

                                     cccccAATAATTGGCTGGTGTTTATGCAAAATGGTCAAGAAGTGGTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAg                                                                                                            >  2:272862/1‑129 (MQ=255)

                                     cccccAATAATTGGCTGGTGTTTATGCAAAATGGTCAAGAAGTGGTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAg                                                                                                            <  1:272862/129‑1 (MQ=255)

                                     cccccAATAATTGGCTGGTGTTTATGCAAAATGGTCAAGAAGTGGTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGc                                                                                                 >  1:1063693/1‑140 (MQ=255)

                                     cccccAATAATTGGCTGGTGTTTATGCAAAATGGTCAAGAAGTGGTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGc                                                                                                 >  2:274040/1‑140 (MQ=255)

                                     cccccAATAATTGGCTGGTGTTTATGCAAAATGGTCAAGAAGTGGTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGc                                                                                                 >  2:1129961/1‑140 (MQ=255)

                                     cccccAATAATTGGCTGGTGTTTATGCAAAATGGTCAAGAAGTGGTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGc                                                                                                 >  2:1483617/1‑140 (MQ=255)

                                     cccccAATAATTGGCTGGTGTTTATGCAAAATGGTCAAGAAGTGGTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGc                                                                                                 >  1:834091/1‑140 (MQ=255)

                                     cccccAATAATTGGCTGGTGTTTATGCAAAATGGTCAAGAAGTGGTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGc                                                                                                 >  2:851620/1‑140 (MQ=255)

                                     cccccAATAATTGGCTGGTGTTTATGCAAAATGGTCAAGAAGTGGTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGc                                                                                                 >  1:257353/1‑140 (MQ=255)

                                     cccccAATAATTGGCTGGTGGTTATGCAAAATGGTCAAGAAGTGGTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGc                                                                                                 >  1:368701/1‑140 (MQ=255)

                                            taatTGGCTGGTGTTTATGCAAAATGGTCAAGAAGTGGTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGCAATCTGa                                                                                          <  1:733468/140‑1 (MQ=255)

                                            taatTGGCTGGTGTTTATGCAAAATGGTCAAGAAGTGGTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGCAATCTGa                                                                                          <  2:1536359/140‑1 (MQ=255)

                                            taatTGGCTGGTGTTTATGCAAAATGGTCAAGAAGTGGTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGCAATCTGa                                                                                          <  2:905180/140‑1 (MQ=255)

                                            taatTGGCTGGTGTTTATGCAAAATGGTCAAGAAGTGGTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGCAATCTGa                                                                                          <  1:368689/140‑1 (MQ=255)

                                            taatTGGCTGGTGTTTATGCAAAATGGTCAAGAAGTGGTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGCAATCTGa                                                                                          <  2:1147684/140‑1 (MQ=255)

                                             aatTGGCTGGTGTTTATGCAAAATGGTCAAGAAGTGGTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGCAATCTGAc                                                                                         <  2:163173/140‑1 (MQ=255)

                                               ttGGCTGGTGTTTATGCAAAATGGTCAAGAAGTGGTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGCAATCTGACgg                                                                                       >  2:1569281/1‑140 (MQ=255)

                                                tGGCTGGTGTTTATGCAAAATGGTCAAGAAGTGGTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGCAATCTGACGGt                                                                                      >  2:40114/1‑140 (MQ=255)

                                                tGGCTGGTGTTTATGCAAAATGGTCAAGAAGTGGTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGCAATCTGACGGt                                                                                      >  2:1166940/1‑140 (MQ=255)

                                                  gCTGGTGTTTATGCAAAATGGTCAAGAAGTGGTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGCAATCTGACGGTcc                                                                                    <  1:1116702/140‑1 (MQ=255)

                                                    tGGTGTTTATGCAAAATGGTCAAGAAGTGGTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGCAATCTGa                                                                                          <  2:1404479/132‑1 (MQ=255)

                                                    tGGTGTTTATGCAAAATGGTCAAGAAGTGGTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGCAATCTGa                                                                                          >  1:1404479/1‑132 (MQ=255)

                                                       tgtTTATGCAAAATGGTCAAGAAGTGGTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGCAATCTGACGGTCCtggtg                                                                               >  2:444915/1‑140 (MQ=255)

                                                          ttATGCAAAATGGTCAAGAAGTGGTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGCAATCTGACGGTCCTGGTGGAg                                                                            <  2:1349300/140‑1 (MQ=255)

                                                          ttATGCAAAATGGTCAAGAAGTGGTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGCAATCTGACGGTCCTGGTGGAg                                                                            <  2:1251964/140‑1 (MQ=255)

                                                          ttATGCAAAATGGTCAAGAAGTGGTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGCAATCTGACGGTCCTGGTGGAg                                                                            <  2:1611671/140‑1 (MQ=255)

                                                                    tGGTCAAGAAGTGGTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGCAATCTGACGGTCCTGGTGGAGGCAAAATGaa                                                                  <  2:72226/140‑1 (MQ=255)

                                                                    tGGTCAAGAAGTGGTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGCAATCTGACGGTCCTGGTGGAGGCAAAATGaa                                                                  <  1:420473/140‑1 (MQ=255)

                                                                      gTCAAGAAGTGGTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGCAATCTGACGGTCCTGGTGGAGGCAAAATGAACa                                                                <  2:248911/140‑1 (MQ=255)

                                                                       tCAAGAAGTGGTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGCAATCTGACGGTCCTGGTGGAGGCAAAATGAACaa                                                               <  1:1503327/140‑1 (MQ=255)

                                                                       tCAAGAAGTGGTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGCAATCTGACGGTCCTGGTGGAGGCAAAATGAACaa                                                               <  2:1633755/140‑1 (MQ=255)

                                                                       tCAAGAAGTGGTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGCAATCTGACGGTCCTGGTGGAGGCAAAATGAACaa                                                               <  2:937899/140‑1 (MQ=255)

                                                                         aagaagTGGTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGCAATCTGACGGTCCTGGTGGAGGCAAAATGAACAATg                                                             <  2:1446209/140‑1 (MQ=255)

                                                                           gaagTGGTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGCAATCTGACGGTCCTGGTGGAGGCAAAATGAACAATGTa                                                           <  1:453215/140‑1 (MQ=255)

                                                                              gTGGTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGCAATCTGACGGTCCTGGTGGAGGCAAAATGaa                                                                  <  2:1322235/130‑1 (MQ=255)

                                                                              gTGGTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGCAATCTGACGGTCCTGGTGGAGGCAAAATGaa                                                                  >  1:1322235/1‑130 (MQ=255)

                                                                                 gTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGCAATCTGACGGTCCTGGTGGAGGCAAAATGAACAATGTAAAATTa                                                     >  2:724817/1‑140 (MQ=255)

                                                                                 gTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGCAATCTGACGGTCCTGGTGGAGGCAAAATGAACAATGTAAAATTa                                                     >  2:900779/1‑140 (MQ=255)

                                                                                 gTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGCAATCTGACGGTCCTGGTGGAGGCAAAATGAACAATGTAAAATTa                                                     >  2:996425/1‑140 (MQ=255)

                                                                                 gTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGCAATCTGACGGTCCTGGTGGAGGCAAAATGAACAATGTAAAATTa                                                     >  1:30335/1‑140 (MQ=255)

                                                                                         tAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGCAATCTGACGGTCCTGGTGGAGGCAAAATGAACAATGTAAAATTACTGATTGc                                             >  1:1555402/1‑140 (MQ=255)

                                                                                            cGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGCAATCTGACGGTCCTGGTGGAGGCAAAATGAACAATGTAAAATTACTGATTGCCgg                                          >  2:208102/1‑140 (MQ=255)

                                                                                                         aGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGGTATTACAGGCAATCTGACGGTCCTGGTGGAGGCAAAATGAACAATGTAAAATTACTGATTGCCGGAAGTGCCtttttt                             >  2:1276275/1‑140 (MQ=255)

                                                                                                         aGCCTCACACTGACAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGCAATCTGACGGTCCTGGTGGAGGCAAAATGAACAATGTAAAATTACTGATTGCCGGAAGTGCCtttttt                             >  2:527974/1‑140 (MQ=255)

                                                                                                               acacTGACAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGCAATCTGACGGTCCTGGTGGAGGCAAAATGAACAATGTAAAATTACTGATTGCCGGAAGTGCCTTTTTTGCCATg                       >  2:399297/1‑140 (MQ=255)

                                                                                                                 acTGACAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGCAATCTGACGGTCCTGGTGGAGGCAAAATGAACAATGTAAAATTACTGATTGCCGGAAGTGCCttt                                <  2:362590/129‑1 (MQ=255)

                                                                                                                    gACAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGCAATCTGACGGTCCTGGTGGAGGCAAAATGAACAATGTAAAATTACTGATTGCCGGAAGTGCCTTTTTTGCCATGTCAgc                  >  1:1499309/1‑140 (MQ=255)

                                                                                                                     aCAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGCAATCTGACGGTCCTGGTGGAGGCAAAATGAACAATGTAAAATTACTGATTGCCGGAAGTGCCTTTTTTGCCATGTCAgcg                 >  2:1591915/1‑140 (MQ=255)

                                                                                                                     aCAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGCAATCTGACGGTCCTGGTGGAGGCAAAATGAACAATGTAAAATTACTGATTGCCGGAAGTGCCTTTTTTGCCATGTCAgcg                 >  2:817447/1‑140 (MQ=255)

                                                                                                                     aCAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGCAATCTGACGGTCCTGGTGGAGGCAAAATGAACAATGTAAAATTACTGATTGCCGGAAGTGCCTTTTTTGCCATGTCAgcg                 >  1:324627/1‑140 (MQ=255)

                                                                                                                      cAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGCAATCTGACGGTCCTGGTGGAGGCAAAATGAACAATGTAAAATTACTGATTGCCGGAAGTGCCTTTTTTGCCATGTCAgcgc                <  1:1166940/140‑1 (MQ=255)

                                                                                                                      cAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGCAATCTGACGGTCCTGGTGGAGGCAAAATGAACAATGTAAAATTACTGATTGCCGGAAGTGCCTTTTTTGCCATGTCAgcgc                <  1:851620/140‑1 (MQ=255)

                                                                                                                      cAATGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGCAATCTGACGGTCCTGGTGGAGGCAAAATGAACAATGTAAAATTACTGATTGCCGGAAGTGCCTTTTTTGCCATGTCAgcgc                <  1:412616/140‑1 (MQ=255)

                                                                                                                        aTGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGCAATCTGACGGTCCTGGTGGAGGCAAAATGAACAATGTAAAATTACTGATTGCCGGAAGTGCCTTTTTTGCCATGTCAGCGCaa              <  1:1084210/140‑1 (MQ=255)

                                                                                                                         tGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGCAATCTGACGGTCCTGGTGGAGGCAAAATGAACAATGTAAAATTACTGATTGCCGGAAGTGCCTTTTTTGCCATGTCAGCGCAAg             >  1:977739/1‑140 (MQ=255)

                                                                                                                         tGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGCAATCTGACGGTCCTGGTGGAGGCAAAATGAACAATGTAAAATTACTGATTGCCGGAAGTGCCTTTTTTGCCATGTCAGCGCAAg             >  2:134909/1‑140 (MQ=255)

                                                                                                                         tGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGCAATCTGACGGTCCTGGTGGAGGCAAAATGAACAATGTAAAATTACTGATTGCCGGAAGTGCCTTTTTTGCCATGTCAGCGCAAg             >  2:718236/1‑140 (MQ=255)

                                                                                                                         tGGCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGCAATCTGACGGTCCTGATGGAGGCAAAATGAACAATGTAAAATTACTGATTGCCGGAAGTGCCTTTTTTGCCATGTCAGCGCAAg             >  2:833516/1‑140 (MQ=255)

                                                                                                                          ggCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGCAATCTGACGGTCCTGGTGGAGGCAAAATGAACAATGTAAAATTACTGATTGCCGGAAGTGCCTTTTTTGCCATGTCAGCGCAAGc            <  1:761098/140‑1 (MQ=255)

                                                                                                                          ggCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGCAATCTGACGGTCCTGGTGGAGGCAAAATGAACAATGTAAAATTACTGATTGCCGGAAGTGCCTTTTTTGCCATGTCAGCGCAAGc            <  1:70590/140‑1 (MQ=255)

                                                                                                                          ggCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGCAATCTGACGGTCCTGGTGGAGGCAAAATGAACAATGTAAAATTACTGATTGCCGGAAGTGCCTTTTTTGCCATGTCAGCGCAAGc            <  2:368701/140‑1 (MQ=255)

                                                                                                                          ggCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGCAACCTGACGGTCCTGGTGGAGGCAAAATGAACAATGTAAAATTACTGATTGCCGGAAGTGCCTTTTTTGCCATGTCAGCGCAAGc            <  2:6433/140‑1 (MQ=255)

                                                                                                                           gCTCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGCAATCTGACGGTCCTGGTGGAGGCAAAATGAACAATGTAAAATTACTGATTGCCGGAAGTGCCTTTTTTGCCATGTCAGCGCAAGcc           >  1:550890/1‑140 (MQ=255)

                                                                                                                             tCCAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGCAATCTGACGGTCCTGGTGGAGGCAAAATGAACAATGTAAAATTACTGATTGCCGGAAGTGCCTTTTTTGCCATGTCAGCGCAAGCCGc         <  1:906014/140‑1 (MQ=255)

                                                                                                                              ccAGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGCAATCTGACGGTCCTGGTGGAGGCAAAATGAACAATGTAAAATTACTGATTGCCGGAAGTGCCTTTTTTGCCATGTCAGCGCAAGCCGCt        <  1:873090/140‑1 (MQ=255)

                                                                                                                               cAGCTTTTAATGATGAAGGGGAACTAACCAACATGACAGATATTACAGGCAATCTGACGGTCCTGGTGGAGGCAAAATGAACAATGTAAAATTACTGATTGCCGGAAGTGCCTTTTTTGCCATGTCAGCGCAAGCCGCTg       >  2:1228531/1‑140 (MQ=255)

                                                                                                                                aGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGCAATCTGACGGTCCTGGTGGAGGCAAAATGAACAATGTAAAATTACTGATTGCCGGAAGTGCCTTTTTTGCCATGTCAGCGCAAGCCGCTGa      >  1:730803/1‑140 (MQ=255)

                                                                                                                                aGCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGCAATCTGACGGTCCTGGTGGAGGCAAAATGAACAATGTAAAATTACTGATTGCCGGAAGTGCCTTTTTTGCCATGTCAGCGCAAGCCGCTGa      <  1:527974/140‑1 (MQ=255)

                                                                                                                                 gCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGCAATCTGACGGTCCTGGTGGAGGCAAAATGAACAATGTAAAATTACTGATTGCCGGAAGTGCCTTTTTTGCCATGTCAGCGCAAGCCGCTGAt     <  1:900779/140‑1 (MQ=255)

                                                                                                                                 gCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGCAATCTGACGGTCCTGGTGGAGGCAAAATGAACAATGTAAAATTACTGATTGCCGGAAGTGCCTTTTTTGCCATGTCAGCGCAAGCCGCTGAt     >  2:160816/1‑140 (MQ=255)

                                                                                                                                 gCTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGCAATCTGACGGTCCTGGTGGAGGCAAAATGAACAATGTAAAATTACTGATTGCCGGAAGTGCCTTTTTTGCCATGTCAGCGCAAGCCGCTGAt     <  2:1304822/140‑1 (MQ=255)

                                                                                                                                  cTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGCAATCTGACGGTCCTGGTGGAGGCAAAATGAACAATGTAAAATTACTGATTGCCGGAAGTGCCTTTTTTGCCATGTCAGCGCAAGCCGCTGATa    <  1:998287/140‑1 (MQ=255)

                                                                                                                                  cTTTTAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGCAATCTGACGGTCCTGGTGGAGGCAAAATGAACAATGTAAAATTACTGATTGCCGGAAGTGCCTTTTTTGCCATGTCAGCGCAAGCCGCTGATa    <  2:1176818/140‑1 (MQ=255)

                                                                                                                                    tttAATGATGAAGGGGAACTAACCGACATGACAGATATTACAGGCAATCTGACGGTCCTGGTGGAGGCAAAATGAACAATGTAAAATTACTGATTGCCGGAAGTGCCTTTTTTGCCATGTCAGCGCAAGCCGCTGATaga  <  1:1195436/140‑1 (MQ=255)

TCATATCAGGGACTTGTTCGCACCTTCCTTAGTACTTCCCCCAATAATTGGCTGGTGTTTATGCAAAATGGTCAAGAAGTGGTAATTGATAGCGGTAAAAGCGTTAGCCTCACACTGACAATGGCTCCAGCTTTTAAGGATGAAGGGGAACTAACCGACATGACAGATATTACAGGCAATCTGACGGTCCTGGTGGAGGCAAAATGAACAATGTAAAATTACTGATTGCCGGAAGTGCCTTTTTTGCCATGTCAGCGCAAGCCGCTGATAGA  >  NC_000913/3366723‑3366994

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A