Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A12 F73 I1 R1
|
28 |
94.5 |
3320338 |
99.3% |
3297095 |
139.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,753,110 |
C→A |
L330L (CTG→CTT) |
yiaV ← |
putative membrane fusion protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,753,110 | 0 | C | A | 99.1%
| 419.3
/ ‑3.3
| 116 | L330L (CTG→CTT) | yiaV | putative membrane fusion protein |
| Reads supporting (aligned to +/- strand): ref base C (0/1); new base A (56/59); total (56/60) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.62e-01 |
Only 100 of 124 total aligned reads displayed.
GATAAAGGTAATGCACCCAGCTGGTCATGCGTAATAGCACTTTGCGCATCACCGAGACATGGCTGAAATGATCAGAGTAAACCGCCACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCCAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAACGTCTGTAAGGTGCCGGTCGACTGATAAGCTCCGCCGGGAACGGCTGGACTAATGGCTGCCAGCTTACCGCTGAATACCTTACCTGGCA > NC_000913/3752974‑3753246
|
gaTAAAGGTAATGCACCCAGCTGGTCATGCGTAATAGCACTTTGCGCATCACCGAGACATGGCTGAAATGATCAGAGTAAACCCCCACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCACCAAGt > 2:404919/1‑140 (MQ=255)
aaaGGTAATGCACCCAGCTGGTCATGCGTAATAGCACTTTGCGCATCACCGAGACATGGCTGAAATGATCAGAGTAAACCGCCACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCa < 2:167078/140‑1 (MQ=255)
tAATGCACCCAGCTGGTCATGCGTAATAGCACTTTGCGCATCACTGAGACATGGCTGAAATGATCAGAGTAAACCGCCACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGt < 1:1548014/140‑1 (MQ=255)
aTGCACCCAGCTGGTCATGCGTAATAGCACTTTGCGCATCACCGAGACATGGCTGAAATGATCAGAGTAAACCGCCACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTcg > 2:685582/1‑140 (MQ=255)
aTGCACCCAGCTGGTCATGCGTAATAGCACTTTGCGCATCACCGAGACATGGCTGAAATGATCAGAGTAAACCGCCACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTcg > 2:824349/1‑140 (MQ=255)
aTGCACCCAGCTGGTCATGCGTAATAGCACTTTGCGCATCACCGAGACATGGCTGAAATGATCAGAGTAAACCGCCACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTcg > 1:1388191/1‑140 (MQ=255)
tGCACCCAGCTGGTCATGCGTAATAGCACTTTGCGCATCACCGAGACATGGCTGAAATGATCAGAGTAAACCGCCACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTcgc > 1:1324280/1‑140 (MQ=255)
cAGCTGGTCATGCGTAATAGCACTTTGCGCATCACCGAGACATGGCTGAAATGATCAGAGTAAACCGCCACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAAc > 2:119747/1‑140 (MQ=255)
aGCTGGTCATGCGTAATAGCACTTTGCGCATCACCGAGACATGGCTGAAATGATCAGAGTAAACCGCCACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACg > 2:1479966/1‑140 (MQ=255)
cTGGTCATGCGTAATAGCACTTTGCGCATCACCGAGACATGGCTGAAATGATCAGAGTAAACCGCCACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGcc > 1:663109/1‑140 (MQ=255)
ggTCATGCGTAATAGCACTTTGCGCATCACCGAGACATGGCTGAAATGATCAGAGTAAACCGCCACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCAt < 2:281074/140‑1 (MQ=255)
gTCATGCGTAATAGCACTTTGCGCATCACCGAGACATGGCTGAAATGATCAGAGTAAACCGCCACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACg > 2:840003/1‑135 (MQ=255)
gTCATGCGTAATAGCACTTTGCGCATCACCGAGACATGGCTGAAATGATCAGAGTAAACCGCCACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACg < 1:840003/135‑1 (MQ=255)
gTCATGCGTAATAGCACTTTGCGCATCACCGAGACATGGCTGAAATGATCAGAGTAAACCGCCACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATc > 1:420565/1‑140 (MQ=255)
gTCATGCGTAATAGCACTTTGCGCATCACCGAGACATGGCTGAAATGATCAGAGTAAACCGCCACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATc > 2:1526954/1‑140 (MQ=255)
gTCATGCGTAATAGCACTTTGCGCATCACCGAGACATGGCTGAAATGATCAGAGTAAACCGCCACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATc > 1:1109464/1‑140 (MQ=255)
aTGCGTAATAGCACTTTGCGCATCACCGAGACATGGCTGAAATGATCAGAGTAAACCGCCACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGa > 1:1127122/1‑140 (MQ=255)
cGTAATAGCACTTTGCGCATCACCGAGACATGGCTGAAATGATCAGAGTAAACCGCCACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAAcc > 1:1380951/1‑140 (MQ=255)
tAATAGCACTTTGCGCATCACCGAGACATGGCTGAAATGATCAGAGTAAACCGCCACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCg < 2:885446/140‑1 (MQ=255)
tAGCACTTTGCGCATCACCGAGACATGGCTGAAATGATCAGAGTAAACCGCCACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGgcg < 2:304050/140‑1 (MQ=255)
aGCACTTTGCGCATCACCGAGACATGGCTGAAATGATCAGAGTAAACCGCCACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGgcgc < 1:434608/140‑1 (MQ=255)
aGCACTTTGCGCATCACCGAGACATGGCTGAAATGATCAGAGTAAACCGCCACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGgcgc < 1:1580019/140‑1 (MQ=255)
aGCACTTTGCGCATCACCGAGACATGGCTGAAATGATCAGAGTAAACCGCCACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGgcgc < 2:1306205/140‑1 (MQ=255)
gCACTTTGCGCATCACCGAGACATGGCTGAAATGATCAGAGTAAACCGCCACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCt < 2:1594168/140‑1 (MQ=255)
tttGCGCATCACCGAGACATGGCTGAAATGATCAGAGTAAACCGCCACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTgtgt < 1:1479966/140‑1 (MQ=255)
ttGCGCATCACCGAGACATGGCTGAAATGATCAGAGTAAACCGCCACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGtt < 2:1127122/140‑1 (MQ=255)
tGCGCATCACCGAGACATGGCTGAAATGATCAGAGTAAACCGCCACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGttt > 2:132848/1‑140 (MQ=255)
tGCGCATCACCGAGACATGGCTGAAATGATCAGAGTAAACCGCCACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGttt < 2:868070/140‑1 (MQ=255)
tGCGCATCACCGAGACATGGCTGAAATGATCAGAGTAAACCGCCACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGttt > 1:669323/1‑140 (MQ=255)
gcgcATCACCGAGACATGGCTGAAATGATCAGAGTAAACCGCCACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTa < 2:669323/140‑1 (MQ=255)
cgcATCACCGAGACATGGCTGAAATGATCAGAGTAAATCGCCACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTaa < 1:1056554/140‑1 (MQ=255)
gcATCACCGAGACATGGCTGAAATGATCAGAGTAAACCGCCACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAAc < 2:420565/140‑1 (MQ=255)
aCCGAGACATGGCTGAAATGATCAGAGTAAACCGCCACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAACGTCTg > 2:885785/1‑140 (MQ=255)
cGAGACATGGCTGAAATGATCAGAGTAAACCGCCACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGgcg < 1:61397/122‑1 (MQ=255)
gaCATGGCTGAAATGATCAGAGTAAACCGCCACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAACGTCTGTAAgg < 2:226927/140‑1 (MQ=255)
cATGGCTGAAATGATCAGAGTAAACCGCCACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAACGTCTGTAAGGTg < 2:692266/140‑1 (MQ=255)
aTGGCTGAAATGATCAGAGTAAACCGCCACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAACGTCTGTAAGGTGc < 2:124496/140‑1 (MQ=255)
tGGCTGAAATGATCAGAGTAAACCGCCACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAACGTCTGTAAGGTGcc > 2:198286/1‑140 (MQ=255)
tGGCTGAAATGATCAGAGTAAACCGCCACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAACGTCTGTAAGGTGcc > 2:58257/1‑140 (MQ=255)
tGGCTGAAATGATCAGAGTAAACCGCCACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAACGTCTGTAAGGTGcc > 2:891829/1‑140 (MQ=255)
tGGCTGAAATGATCAGAGTAAACCGCCACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAACGTCTGTAAGGTGcc > 2:306491/1‑140 (MQ=255)
ggCTGAAATGATCAGAGTAAACCGCCACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAACGTCTGTAAGGTGCCg < 1:355777/140‑1 (MQ=255)
ggCTGAAATGATCAGAGTAAACCGCCACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAACGTCTGTAAGGTGCCg < 1:85318/140‑1 (MQ=255)
gCTGAAATGATCAGAGTAAACCGCCACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTaa > 1:546395/1‑123 (MQ=255)
gCTGAAATGATCAGAGTAAACCGCCACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTaa < 2:546395/123‑1 (MQ=255)
gCTGAAATGATCAGAGTAAACCGCCACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAACGTCTGTAAGGTGCCgg < 2:1109464/140‑1 (MQ=255)
cTGAAATGATCAGAGTAAACCGCCACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAACGTCTGTAAGGTGCCGGt > 2:740493/1‑140 (MQ=255)
tGAAATGATCAGAGTAAACCGCCACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAACGTCTGTAAGGTGCCGGTc < 1:132848/140‑1 (MQ=255)
tGAAATGATCAGAGTAAACCGCCACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAACGTCTGTAAGGTGCCGGTc < 1:119747/140‑1 (MQ=255)
tGAAATGATCAGAGTAAACCGCCACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAACGTCTGTAAGGTGCCGGTc < 1:306491/140‑1 (MQ=255)
gAAATGATCAGAGTAAACCGCCACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAACGTCTGTAAGGTGCCGGTCg > 2:1656388/1‑140 (MQ=255)
aTCAGAGTAAACCGCCACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAACGTCTGTAAGGTGCCGGTCGACTGAt > 2:620360/1‑140 (MQ=255)
aTCAGAGTAAACCGCCACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAACGTCTGTAAGGTGCCGGTCGACTGAt > 2:1206156/1‑140 (MQ=255)
aTCAGAGTAAACCGCCACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAACGTCTGTAAGGTGCCGGTCGACTGAt > 1:796716/1‑140 (MQ=255)
aTCAGAGTAAACCGCCACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAACGTCTGTAAGGTGCCGGTCGACTGAt > 1:1005990/1‑140 (MQ=255)
aTCAGAGCAAACCGCCACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAACGTCTGTAAGGTGCCGGTCGACTGAt > 1:438534/1‑140 (MQ=255)
agTAAACCGCCACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCCAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAACGTCTGTAAGGTGCCGGTCGACTGATAAGCt < 1:1436401/140‑1 (MQ=255)
aCCGCCACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCCCTGCGTTTAACGTCTGTAAGGTGCCGGCCGCCTGATAACCCccgcc > 1:434015/1‑140 (MQ=255)
aCCGCCAACTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAACGTCTGTAAGGTGCCGGTCGACTGATAAGCTccgcc > 2:539507/1‑140 (MQ=255)
gCCACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAACGTCTGTAAGGTGCCGGTCGACTGATAAGCTCCGCCggg < 1:736828/140‑1 (MQ=255)
ccACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAACGTCTGTAAGGTGCCGGTCGACTGATAAGCTCCGCCGGGa < 1:985700/140‑1 (MQ=255)
cACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAACGTCTGTAAGGTGCCGGTCGACTGATAAGCTCCGCCggg > 2:766481/1‑138 (MQ=255)
cACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAACGTCTGTAAGGTGCCGGTCGACTGATAAGCTCCGCCggg < 1:766481/138‑1 (MQ=255)
cACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAACGTCTGTAAGGTGCCGGTCGACTGATAAGCTCCGCCggg > 2:982775/1‑138 (MQ=255)
cACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAACGTCTGTAAGGTGCCGGTCGACTGATAAGCTCCGCCggg < 1:982775/138‑1 (MQ=255)
cACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAACGTCTGTAAGGTGCCGGTCGACTGATAAGCTCCGCCGGGaa > 2:126961/1‑140 (MQ=255)
cACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAACGTCTGTAAGGTGCCGGTCGACTGATAAGCTCCGCCGGGaa > 1:625343/1‑140 (MQ=255)
cACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAACGTCTGTAAGGTGCCGGTCGACTGATAAGCTCCGCCGGGaa > 2:116081/1‑140 (MQ=255)
ccTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAACGTCTGTAAGGTGCCGGTCGACTGATAAGCTCCGCCGGGAACg > 1:209484/1‑140 (MQ=255)
tGGACGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAACGTCTGTAAGGTGCCGGTCGACTGATAAGCTCCGCCGGGAACGGc < 2:581146/140‑1 (MQ=255)
gCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAACGTCTGTAAGGTGCCGGTCGACTGATAAGCTCCGCCGGGAACGGCTgg > 2:1451084/1‑140 (MQ=255)
aaTACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAACGTCTGTAAGGTGCCGGTCGACTGATAAGCTCCGCCGGGAACGGCTGGACTaa < 1:885785/140‑1 (MQ=255)
cGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAACGTCTGTAAGGTGCCGGTCGACTGATAAGCTCCGCCGGGAACGGCTGGACTAATGGCt > 1:134879/1‑140 (MQ=255)
tCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAACGTCTGTAAGGTGCCGGTCGACTGATAAGCTCCGCCGGGAACGGCTGGACTAATGGCTGc > 1:392012/1‑140 (MQ=255)
tCTGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAACGTCTGTAAGGTGCCGGTCGACTGATAAGCTCCGCCGGGAACGGCTGGACTAATGGCTGc < 1:1656388/140‑1 (MQ=255)
tGGTAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAACGTCTGTAAGGTGCCGGTCGACTGATAAGCTCCGCCGGGAACGGCTGGACTAATGGCTGCCa > 1:1130620/1‑140 (MQ=255)
tGGTAAAGCGCTCAAATCAATGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAACGTCTGTAAGGTGCCGGTCGACTGATAAGCTCCGCCGGGAACgg > 2:96559/1‑122 (MQ=255)
tGGTAAAGCGCTCAAATCAATGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAACGTCTGTAAGGTGCCGGTCGACTGATAAGCTCCGCCGGGAACgg < 1:96559/122‑1 (MQ=255)
tAAAGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAACGTCTGTAAGGTGCCGGTCGACTGATAAGCTCCGCCGGGAACGGCTGGACTAATGGCTGCCAGCt > 1:507975/1‑140 (MQ=255)
aaGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAACGTCTGTAAGGTGCCGGTCGACTGATAAGCTCCGCCGGGAACGGCTGGACTAATGGCTGCCAGCTTa < 2:931165/140‑1 (MQ=255)
aGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAACGTCTGTAAGGTGCCGGTCGACTGATAAGCTCCGCCGGGAACGGCTGGACTAATGGCTGCCAGCTTAc < 2:1626808/140‑1 (MQ=255)
aGCGCTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAACGTCTGTAAGGTGCCGGTCGACTGATAAGCTCCGCCGGGAACGGCTGGACTAATGGCTGCCAGCTTAc < 1:404919/140‑1 (MQ=255)
cgcTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAACGTCTGTAAGGTGCCGGTCGACTGATAAGCTCCGCCGGGAACGGCTGGACTAATGGCTGCCAGCTTACCg < 2:980663/140‑1 (MQ=255)
cgcTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAACGTCTGTAAGGTGCCGGTCGACTGATAAGCTCCGCCGGGAACGGCTGGACTAATGGCTGCCAGCTTACCg > 1:980663/1‑140 (MQ=255)
cgcTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAACGTCTGTAAGGTGCCGGTCGACTGATAAGCTCCGCCGGGAACGGCTGGACTAATGGCTGCCAGCTTACCg < 1:763996/140‑1 (MQ=255)
cTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAACGTCTGTAAGGTGCCGGTCGACTGATAAGCTCCGCCGGGAACGGCTGGACTAATGGCTGCCAGCTTACCg < 2:885246/138‑1 (MQ=255)
cTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAACGTCTGTAAGGTGCCGGTCGACTGATAAGCTCCGCCGGGAACGGCTGGACTAATGGCTGCCAGCTTACCg > 1:885246/1‑138 (MQ=255)
cTCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAACGTCTGTAAGGTGCCGGTCGACTGATAAGCTCCGCCGGGAACGGCTGGACTAATGGCTGCCAGCTTACCGCt > 1:623823/1‑140 (MQ=255)
tCAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAACGTCTGTAAGGTGCCGGTCGACTGATAAGCTCCGCCGGGAACGGCTGGACTAATGGCTGCCAGCTTACCGCTg < 2:651920/140‑1 (MQ=255)
cAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAACGTCTGTAAGGTGCCGGTCGACTGATAAGCTCCGCCGGGAACGGCTGGACTAATGGCTGCCAGCTTACCGCTGa > 2:670832/1‑140 (MQ=255)
cAAATCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAACGTCTGTAAGGTGCCGGTCGACTGATAAGCTCCGCCGGGAACGGCTGGACTAATGGCTGCCAGCTTACCGCTGa < 2:415264/140‑1 (MQ=255)
aaaTCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAACGTCTGTGAGGTGCCGGTCGACTGATAAGCTCCGCCGGGAACGGCTGGACTAATGGCTGCCAGCTTACCGCTGaa < 1:685582/140‑1 (MQ=255)
aaaTCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAACGTCTGTAAGGTGCCGGTCGACTGATAAGCTCCGCCGGGAACGGCTGGACTAATGGCTGCCAGCTTACCGCTGaa > 2:400805/1‑140 (MQ=255)
aTCAGTGTGCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAACGTCTGTAAGGTGCCGGTCGACTGATAAGCTCCGCCGGGAACGGCTGGACTAATGGCTGCCAGCTTACCGCTGAAta < 1:620360/140‑1 (MQ=255)
tgCTCATCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAACGTCTGTAAGGTGCCGGTCGACTGATAAGCTCCGCCGGGAACGGCTGGACTAATGGCTGCCAGCTTACCGCTGAAtaccttacc < 1:1211337/140‑1 (MQ=255)
tcatcaAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAACGTCTGTAAGGTGCCGGTCGACTGATAAGCTCCGCCGGGAACGGCTGGACTAATGGCTGCCAGCTTACCGCTGAAtacctta > 1:226675/1‑135 (MQ=255)
tcatcaAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAACGTCTGTAAGGTGCCGGTCGACTGATAAGCTCCGCCGGGAACGGCTGGACTAATGGCTGCCAGCTTACCGCTGAATACCTTACCTgg < 2:611959/140‑1 (MQ=255)
tcatcaAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAACGTCTGTAAGGTGCCGGTCGACTGATAAGCTCCGCCGGGAACGGCTGGACTAATGGCTGCCAGCTTACCGCTGAATACCTTACCTgg < 2:812012/140‑1 (MQ=255)
tcatcaAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAACGTCTGTAAGGTGCCGGTCGACTGATAAGCTCCGCCGGGAACGGCTGGACTAATGGCTGCCAGCTTACCGCTGAATACCTTACCTgg < 1:681797/140‑1 (MQ=255)
aTCAAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAACGTCTGTAAGGTGCCGGTCGACTGATAAGCTCCGCCGGGAACGGCTGGACTAATGGCTGCCAGCTTACCGCTGAATACCTTACCTGGCa < 1:539507/140‑1 (MQ=255)
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GATAAAGGTAATGCACCCAGCTGGTCATGCGTAATAGCACTTTGCGCATCACCGAGACATGGCTGAAATGATCAGAGTAAACCGCCACCTGGGCGTAAATACCGTCTGGTAAAGCGCTCAAATCAGTGTGCTCATCCAGTTCAATGGTCGCGATAACGCCATCTGAACCCGGCGCTGTGTTTAACGTCTGTAAGGTGCCGGTCGACTGATAAGCTCCGCCGGGAACGGCTGGACTAATGGCTGCCAGCTTACCGCTGAATACCTTACCTGGCA > NC_000913/3752974‑3753246
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
