Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A12 F73 I1 R1	28	94.5	3320338	99.3%	3297095	139.2

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,199,534	G→T	E11* (GAG→TAG)	yjaG →	conserved protein YjaG

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,199,534	0	G	T	100.0%	338.2 / NA	94	E11* (GAG→TAG)	yjaG	conserved protein YjaG
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (42/52); total (42/52)

CTGGGCGGACGCGGTGGCCTCGGAACGTCCGGCGTTCGTGCGCTATACAGCAAATCAGCCCTAATTCAGGTAAACTGCGGATAATTTCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGGAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCATGTACCCCAATTACGCCATGTTCTGCCAGCAAACCGGTTTTGGTGATGGGCAAATTTACCGTCGCATTCTCGATCTCAT  >  NC_000913/4199398‑4199667

cTGGGCGGACGCGGTGGCCTCGGAACGTCCGGCGTTCGTGCGCTATACAGCAAATCAGCCCTAATTCAGGTAAACTGCGGATAATTTCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGTAgc                                                                                                                                    >  2:576531/1‑140 (MQ=255)

cTGGGCGGACGCGGTGGCCTCGGAACGTCCGGCGTTCGTGCGCTATACAGCAAATCAGCCCTAATTCAGGTAAACTGCGGATAATTTCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGTAgc                                                                                                                                    >  2:1276924/1‑140 (MQ=255)

  gggCGGACGCGGTGGCCTCGGAACGTCCGGCGTTCGTGCGCTATACAGCAAATCAGCCCTAATTCAGGTAAACTGCGGATAATTTCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGTAgcgc                                                                                                                                  <  1:586953/140‑1 (MQ=255)

                       aaCGTCCGGCGTTCGTGCGCTATACAGCAAATCAGCCCTAATTCAGGTAAACTGCGGATAATTTCCGTATTCGAGAACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTc                                                                                                             <  2:1135285/140‑1 (MQ=255)

                        aCGTCCGGCGTTCGTGCGCTATACAGCAAATCAGCCCTAATTCAGGTAAACTGCGGATAATTTCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCa                                                                                                            <  2:1126433/140‑1 (MQ=255)

                        aCGTCCGGCGTTCGTGCGCTATACAGCAAATCAGCCCTAATTCAGGTAAACTGCGGATAATTTCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCa                                                                                                            <  1:909924/140‑1 (MQ=255)

                                cGTTCGTGCGCTATACAGCAAATCAGCCCTAATTCAGGTAAACTGCGGATAATTTCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATg                                                                                                    <  2:1583694/140‑1 (MQ=255)

                                 gTTCGTGCGCTATACAGCAAATCAGCCCTAATTCAGGTAAACTGCGGATAATTTCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATgg                                                                                                   <  1:1656602/140‑1 (MQ=255)

                                 gTTCGTGCGCTATACAGCAAATCAGCCCTAATTCAGGTAAACTGCGGATAATTTCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATgg                                                                                                   >  2:60951/1‑140 (MQ=255)

                                    cGTGCGCTATACAGCAAATCAGCCCTAATTCAGGTAAACTGCGGATAATTTCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCa                                                                                                      <  2:187949/134‑1 (MQ=255)

                                    cGTGCGCTATACAGCAAATCAGCCCTAATTCAGGTAAACTGCGGATAATTTCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCa                                                                                                      >  1:187949/1‑134 (MQ=255)

                                     gTGCGCTATACAGCAAATCAGCCCTAATTCAGGTAAACTGCGGATAATTTCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGgcttg                                                                                               <  2:296012/140‑1 (MQ=255)

                                      tGCGCTATACAGCAAATCAGCCCTAATTCAGGTAAACTGCGGATAATTTCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACt                                                                                                          <  2:571020/128‑1 (MQ=255)

                                      tGCGCTATACAGCAAATCAGCCCTAATTCAGGTAAACTGCGGATAATTTCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACt                                                                                                          >  1:571020/1‑128 (MQ=255)

                                      tGCGCTATACAGCAAATCAGCCCTAATTCAGGTAAACTGCGGATAATTTCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGgcttgc                                                                                              >  2:858180/1‑140 (MQ=255)

                                      tGCGCTATACAGCAAATCAGCCCTAATTCAGGTAAACTGCGGATAATTTCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGgcttgc                                                                                              >  2:1096924/1‑140 (MQ=255)

                                          cTATACAGCAAATCAGCCCTAATTCAGGTAAACTGCGGATAATTTCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTAt                                                                                          <  2:1300431/140‑1 (MQ=255)

                                             taCAGCAAATCAGCCCTAATTCAGGTAAACTGCGGATAATTTCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGca                                                                                       <  1:1138613/140‑2 (MQ=255)

                                             taCAGCAAATCAGCCCTAATTCAGGTAAACTGCGGATAATTTCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCg                                                                                       <  1:858180/140‑1 (MQ=255)

                                             taCAGCAAATCAGCCCTAATTCAGGTAAACTGCGGATAATTTCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCg                                                                                       <  1:1537049/140‑1 (MQ=255)

                                             taCAGCAAATCAGCCCTAATTCAGGTAAACTGCGGATAATTTCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCg                                                                                       <  1:455149/140‑1 (MQ=255)

                                             taCAGCAAATCAGCCCTAATTCAGGTAAACTGCGGATAATTTCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCg                                                                                       <  1:1096924/140‑1 (MQ=255)

                                              tcAGCAAATCAGCCCCAATTCTGCTAAACTGCCGTTAAGTTCCGTATTTGAGATCTCAACATGTTACAAATCGCAATTTATCAGCGTCTGTAGAGCCTGGAAAGCTGGCACCATGTTTCTTTCATGGCTTGCTTATGGGa                                                                                      <  2:265532/139‑1 (MQ=255)

                                               cAGCAAATCAGCCCTAATTCAGGTAAACTGCGGATAATTTCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGaa                                                                                     <  2:1527937/140‑1 (MQ=255)

                                               cAGCAAATCAGCCCTAATTCAGGTAAACTGCGGATAATTTCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGaa                                                                                     <  2:1062738/140‑1 (MQ=255)

                                               cAGCAAATCAGCCCTAATTCAGGTAAACTGCGGATAATTTCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGaa                                                                                     <  2:528241/140‑1 (MQ=255)

                                                  cAAATCAGCCCTAATTCAGGTAAACTGCGGATAATTTCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGc                                                                                  <  1:1092364/140‑1 (MQ=255)

                                                  cAAATCAGCCCTAATTCAGGTAAACTGCGGATAATTTCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGc                                                                                  >  1:1298655/1‑140 (MQ=255)

                                                   aaaTCAGCCCTAATTCAGGTAAACTGCGGATAATTTCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCa                                                                                 <  1:860600/140‑1 (MQ=255)

                                                       cAGCCCTAATTCAGGTAAACTGCGGATAATTTCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCAt                                                                                >  1:389469/1‑137 (MQ=255)

                                                       cAGCCCTAATTCAGGTAAACTGCGGATAATTTCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCAt                                                                                <  2:389469/137‑1 (MQ=255)

                                                       cAGCCCTAATTCAGGTAAACTGCGGATAATTTCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCATGTa                                                                             >  2:339327/1‑140 (MQ=255)

                                                       cAGCCCTAATTCAGGTAAACTGCGGATAATTTCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCATGTa                                                                             >  1:1138014/1‑140 (MQ=255)

                                                       cAGCCCTAATTCAGGTAAACTGCGGATAATTTCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCATGTa                                                                             >  1:1150200/1‑140 (MQ=255)

                                                       cAGCCCTAATTCAGGTAAACTGCGGATAATTTCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCATGTa                                                                             >  2:1415815/1‑140 (MQ=255)

                                                       cAGCCCTAATTCAGGTAAACTGCGGATAATTTCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCATGTa                                                                             >  1:1457883/1‑140 (MQ=255)

                                                       cAGCCCTAATTCAGGTAAACTGCGGATAATTTCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCATGTa                                                                             >  2:164423/1‑140 (MQ=255)

                                                         gCCCTAATTCAGGTAAACTGCGGATAATTTCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCATGTAcc                                                                           <  2:670597/140‑1 (MQ=255)

                                                          cccTAATTCAGGTAAACTGCGGATAATTTCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCa                                                                                 >  1:1029753/1‑133 (MQ=255)

                                                          cccTAATTCAGGTAAACTGCGGATAATTTCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCa                                                                                 <  2:1029753/133‑1 (MQ=255)

                                                          cccTAATTCAGGTAAACTGCGGATAATTTCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCAt                                                                                <  1:626695/134‑1 (MQ=255)

                                                          cccTAATTCAGGTAAACTGCGGATAATTTCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCAt                                                                                >  2:626695/1‑134 (MQ=255)

                                                          cccTAATTCAGGTAAACTGCGGATAATTTCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCATGTAccc                                                                          <  2:1201562/140‑1 (MQ=255)

                                                             tAATTCAGGTAAACTGCGGATAATTTCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCATGTACCCCaa                                                                       <  1:410206/140‑1 (MQ=255)

                                                                   aGGTAAACTGCGGATAATTTCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCATGTACCCCAATTACGc                                                                 <  2:1566119/140‑1 (MQ=255)

                                                                    ggTAAACTGCGGATAATTTCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCATGTACCCCAATTACGcc                                                                >  2:1171915/1‑140 (MQ=255)

                                                                     gTAAACTGCGGATAATTTCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCATGTACCCCAATTACGCCa                                                               >  1:507034/1‑140 (MQ=255)

                                                                         aCTGCGGATAATTTCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCATGTACCCCAATTACGCCATGtt                                                           >  2:402535/1‑140 (MQ=255)

                                                                         aCTGCGGATAATTTCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCATGTACCCCAATTACGCCATGtt                                                           >  2:979644/1‑140 (MQ=255)

                                                                         aCTGCGGATAATTTCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCATGTACCCCAATTACGCCATGtt                                                           >  2:1043164/1‑140 (MQ=255)

                                                                          cTGCGGATAATTTCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCATGTACCCCAATTACGCCATGTTc                                                          >  2:207328/1‑140 (MQ=255)

                                                                           tGCGGATAATTTCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCATGTACCCCTATTACGCCATGTTCt                                                         <  2:975540/140‑1 (MQ=255)

                                                                           tGCGGATAATTTCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCATGTACCCCAATTACGCCATGTTCt                                                         <  1:1043164/140‑1 (MQ=255)

                                                                           tGCGGATAATTTCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCATGTACCCCAATTACGCCATGTTCt                                                         <  1:979644/140‑1 (MQ=255)

                                                                             cGGATAATTTCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCATGTACCCCAATTACGCCATGTTCTGc                                                       >  2:668218/1‑140 (MQ=255)

                                                                             cGGATAATTTCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCATGTACCCCAATTACGCCATGTTCTGc                                                       >  1:36105/1‑140 (MQ=255)

                                                                               gATAATTTCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCATGTACCCCAATTACGCCATGTTCTGCCa                                                     >  1:945214/1‑140 (MQ=255)

                                                                               gATAATTTCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCATGTACCCCAATTACGCCATGTTCTGCCa                                                     >  1:1185512/1‑140 (MQ=255)

                                                                                 tAATTTCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCATGTACCCCAATTACGCCATGTTCTGCCAGc                                                   <  1:1276924/140‑1 (MQ=255)

                                                                                     ttCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCATGTACCCCAATTACGCCATGTTCTGCCAACAAAc                                               <  1:164423/140‑1 (MQ=255)

                                                                                      tCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCATGTACCCCAATTACGCCATGTTCTGCCAGCAAAcc                                              <  2:945214/140‑1 (MQ=255)

                                                                                         gTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCATGTACCCCAATTACGCCATGTTCTGCCAGCAAACCGGt                                           >  1:1642619/1‑140 (MQ=255)

                                                                                                agaACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCATGTACCCCAATTACGCCATGTTCTGCCAGCAAACCGGTTTTGGTg                                    <  2:951205/140‑1 (MQ=255)

                                                                                                 gaACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCATGTACCCCAATTACGCCATGTTCTGCCAGCAAACCGGTTTTGGTGa                                   <  2:1598800/140‑1 (MQ=255)

                                                                                                 gaACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCATGTACCCCAATTACGCCATGTTCTGCCAGCAAACCGGTTTTGGTGa                                   <  2:258998/140‑1 (MQ=255)

                                                                                                    cTCAACATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCATGTACCCCAATTACGCCATGTTCTGCCAGCAAACCGGTTTTGGTGATgg                                >  2:1187885/1‑140 (MQ=255)

                                                                                                    cTCAACATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCATGTACCCCAATTACGCCATGTTCTGCCAGCAAACCGGTTTTGGTGATgg                                <  1:576531/140‑1 (MQ=255)

                                                                                                       aaCATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCATGTACCCCAATTACGCCATGTTCTGCCAGCAAACCGGTTTTGGTGATGGGCa                             >  1:862953/1‑140 (MQ=255)

                                                                                                       aaCATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCATGTACCCCAATTACGCCATGTTCTGCCAGCAAACCGGTTTTGGTGATGGGCa                             >  2:659126/1‑140 (MQ=255)

                                                                                                       aaCATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCATGTACCCCAATTACGCCATGTTCTGCCAGCAAACCGGTTTTGGTGATGGGCa                             >  1:511175/1‑140 (MQ=255)

                                                                                                       aaCATGTTACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCATGTACCCCAATTACGCCATGTTCTGCCAGCAAACCGGTTTTGGTGATGGGCa                             >  1:72508/1‑140 (MQ=255)

                                                                                                              tACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCATGTACCCCAATTACGCCATGTTCTGCCAGCAAACCGGTTTTGGTGATGGGCAAATTTAc                      >  1:921309/1‑140 (MQ=255)

                                                                                                              tACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCATGTACCCCAATTACGCCATGTTCTGCCAGCAAACCGGTTTTGGTGATGGGCAAATTTAc                      <  1:1487394/140‑1 (MQ=255)

                                                                                                              tACAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCATGTACCCCAATTACGCCATGTTCTGCCAGCAAACCGGTTTTGGTGATGGGCAAATTTAc                      >  2:1487394/1‑140 (MQ=255)

                                                                                                               aCAAAACCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCATGTACCCCAATTACGCCATGTTCTGCCAGCAAACCGGTTTTGGTGATGGGCAAATTTAcc                     <  2:1457883/140‑1 (MQ=255)

                                                                                                                 aaaaCCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCATGTACCCCAATTACGCCATGTTCTGCCAGCAAACCGGTTTTGGTGATGGGCAAATTTACCGt                   >  2:587670/1‑140 (MQ=255)

                                                                                                                  aaaCCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCATGTACCCCAATTACGCCATGTTCTGCCAGCAAACCGGTTTTGGTGATGGGCAAATTTACCGTc                  <  1:942422/140‑1 (MQ=255)

                                                                                                                   aaCCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCATGTACCCCAATTACGCCATGTTCTGCCAGCAAACCGGTTTTGGTGATGGGCAAATTTACCGTCg                 <  1:289627/140‑1 (MQ=255)

                                                                                                                   aaCCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCATGTACCCCAATTACGCCATGTTCTGCCAGCAAACCGGTTTTGGTGATGGGCAAATTTACCGTCg                 <  2:72508/140‑1 (MQ=255)

                                                                                                                   aaCCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCATGTACCCCAATTACGCCATGTTCTGCCAGCAAACCGGTTTTGGTGATGGGCAAATTTACCGTCg                 <  1:60951/140‑1 (MQ=255)

                                                                                                                   aaCCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCATGTACCCCAATTACGCCATGTTCTGCCAGCAAACCGGTTTTGGTGATGGGCAAATTTACCGTCg                 >  2:1328045/1‑140 (MQ=255)

                                                                                                                    aCCCAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCATGTACCCCAATTACGCCATGTTCTGCCAGCAAACCGGTTTTGGTGATGGGCAAATTTACCGTCGc                >  2:121493/1‑140 (MQ=255)

                                                                                                                     cccAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCATGTACCCCAATTACGCCATGTTCTGCCAGCAAACCGGTTTTGGTGATGGGCAAATTTACCGTCGCa               <  1:659126/140‑1 (MQ=255)

                                                                                                                     cccAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCATGTACCCCAATTACGCCATGTTCTGCCAGCAAACCGGTTTTGGTGATGGGCAAATTTACCGTCGCa               <  1:1415815/140‑1 (MQ=255)

                                                                                                                     cccAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCATGTACCCCAATTACGCCATGTTCTGCCAGCAAACCGGTTTTGGTGATGGGCAAATTTACCGTCGCa               >  1:1278156/1‑140 (MQ=255)

                                                                                                                      ccAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCATGTACCCCAATTACGCCATGTTCTGCCAGCAAACCGGTTTTGGTGATGGGCAAATTTACCGTCGCAt              >  1:1411988/1‑140 (MQ=255)

                                                                                                                       cAATTCATCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCATGTACCCCAATTACGCCATGTTCTGCCAGCAAACCGGTTTTGGTGATGGGCAAATTTACCGTCGCAtt             <  1:339327/140‑1 (MQ=255)

                                                                                                                             aTCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCATGTACCCCAATTACGCCATGTTCTGCCAGCAAACCGGTTTTGGTGATGGGCAAATTTACCGTCGCATTCTCGAt       <  2:1150200/140‑1 (MQ=255)

                                                                                                                              tCTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCATGTACCCCAATTACGCCATGTTCTGCCAGCAAACCGGTTTTGGTGATGGGCAAATTTACCGTCGCATTCTCGAtc      <  2:1580952/140‑1 (MQ=255)

                                                                                                                               cTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCATGTACCCCAATTACGCCATGTTCTGCCAGCAAACCGGTTTTGGTGATGGGCAAATTTACCGTCGCATTCTCGAtct     <  2:511175/140‑1 (MQ=255)

                                                                                                                               cTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCATGTACCCCAATTACGCCATGTTCTGCCAGCAAACCGGTTTTGGTGATGGGCAAATTTACCGTCGCATTCTCGAtct     >  1:1623661/1‑140 (MQ=255)

                                                                                                                               cTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCATGTACCCCAATTACGCCATGTTCTGCCAGCAAACCGGTTTTGGTGATGGGCAAATTTACCGTCGCATTCTCGAt       <  1:1142520/138‑1 (MQ=255)

                                                                                                                               cTGCGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCATGTACCCCAATTACGCCATGTTCTGCCAGCAAACCGGTTTTGGTGATGGGCAAATTTACCGTCGCATTCTCGAt       >  2:1142520/1‑138 (MQ=255)

                                                                                                                                  cGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCATGTACCCCAATTACGCCATGTTCTGCCAGCAAACCGGTTTTGGTGATGGGCAAATTTACCGTCGCATTCTCGATCTCAt  <  1:1435679/140‑1 (MQ=255)

                                                                                                                                  cGTCTGTAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCATGTACCCCAATTACGCCATGTTCTGCCAGCAAACCGGTTTTGGTGATGGGCAAATTTACCGTCGCATTCTCGATCTCAt  <  1:1634952/140‑1 (MQ=255)

CTGGGCGGACGCGGTGGCCTCGGAACGTCCGGCGTTCGTGCGCTATACAGCAAATCAGCCCTAATTCAGGTAAACTGCGGATAATTTCCGTATTTGAGAACTCAACATGTTACAAAACCCAATTCATCTGCGTCTGGAGCGCCTGGAAAGCTGGCAGCATGTCACTTTCATGGCTTGCTTATGCGAACGCATGTACCCCAATTACGCCATGTTCTGCCAGCAAACCGGTTTTGGTGATGGGCAAATTTACCGTCGCATTCTCGATCTCAT  >  NC_000913/4199398‑4199667

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A