Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A4 F73 I1 R1	27	211.6	7358776	99.3%	7307264	139.3

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,304,229	G→T	R59R (CGA→AGA)	ytcA ←	putative lipoprotein YtcA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,304,229	0	G	T	100.0%	808.3 / NA	220	R59R (CGA→AGA)	ytcA	putative lipoprotein YtcA
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (142/78); total (142/78)

Only 100 of 221 total aligned reads displayed.

GCGTACTTTCCATGAGCGCGTCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCGCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCACCGGGATTGCCGGAGATAATGAGCATCCCGAAACCATGAAGACGGGAATTATCCAGGCTGTTTTT  >  NC_000913/4304097‑4304365

   tACTTTCCATGAGCGCGTCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGtgatg                                                                                                                                <  1:882236/140‑1 (MQ=255)

        tCCATGAGCGCGTCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGt                                                                                                                           <  1:2413006/140‑1 (MQ=255)

              aGCGCGTCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAAt                                                                                                                     <  2:1468584/140‑1 (MQ=255)

               gcgcGTCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATa                                                                                                                    >  1:3440013/1‑140 (MQ=255)

               gcgcGTCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATa                                                                                                                    <  1:2281826/140‑1 (MQ=255)

                  cgTCTCAAATAGATTAGAAAATTGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAgg                                                                                                                 >  2:3238302/1‑140 (MQ=255)

                  cgTCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAgg                                                                                                                 >  2:1296265/1‑140 (MQ=255)

                  cgTCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAgg                                                                                                                 >  1:1507205/1‑140 (MQ=255)

                              aTTAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGgcg                                                                                                     >  1:3460428/1‑140 (MQ=255)

                                tAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCa                                                                                                   >  2:698685/1‑140 (MQ=255)

                                tAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCa                                                                                                   >  1:1291077/1‑140 (MQ=255)

                                tAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCa                                                                                                   >  2:402098/1‑140 (MQ=255)

                                  gAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGa                                                                                                 >  1:1073578/1‑140 (MQ=255)

                                       aTGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAAc                                                                                            <  2:3460428/140‑1 (MQ=255)

                                        tGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGaaaaa                                                                                             <  2:758668/138‑1 (MQ=255)

                                        tGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGaaaaa                                                                                             >  1:758668/1‑138 (MQ=255)

                                        tGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAAcc                                                                                           >  2:2159243/1‑140 (MQ=255)

                                        tGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAAcc                                                                                           >  2:926968/1‑140 (MQ=255)

                                          ccagccagAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAg                                                                                         <  2:309621/140‑1 (MQ=255)

                                          ccagccagAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAg                                                                                         <  1:709775/140‑1 (MQ=255)

                                          ccagccagAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAg                                                                                         <  1:1461454/140‑1 (MQ=255)

                                          ccagccagAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCACGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAg                                                                                         <  2:2656254/140‑1 (MQ=255)

                                           cagccagAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGc                                                                                        <  1:1691582/140‑1 (MQ=255)

                                            agccagAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAGACCAGCt                                                                                       <  1:3579998/140‑1 (MQ=255)

                                                    cAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGataat                                                                               <  1:1734703/140‑1 (MQ=255)

                                                       cATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAg                                                                            >  2:2906916/1‑140 (MQ=255)

                                                       cATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAg                                                                            >  2:1914895/1‑140 (MQ=255)

                                                         tGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAgcg                                                                          >  1:1790032/1‑140 (MQ=255)

                                                            cGTAGAGAGCAAAAATGGCTGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCg                                                                       <  1:3126466/140‑1 (MQ=255)

                                                            cGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCg                                                                       <  1:97388/140‑1 (MQ=255)

                                                            cGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCg                                                                       >  1:930614/1‑140 (MQ=255)

                                                            cGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCg                                                                       >  2:3338324/1‑140 (MQ=255)

                                                              tAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGAt                                                                     >  2:1938023/1‑140 (MQ=255)

                                                                 agagCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCAc                                                                  >  2:1801616/1‑140 (MQ=255)

                                                                 agagCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCAc                                                                  >  2:1019987/1‑140 (MQ=255)

                                                                 agagCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCAc                                                                  >  2:1447697/1‑140 (MQ=255)

                                                                 agagCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCAc                                                                  >  2:2467848/1‑140 (MQ=255)

                                                                 agagCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACACTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCAc                                                                  >  1:2994713/1‑140 (MQ=255)

                                                                  gagCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCAcc                                                                 >  2:2795957/1‑140 (MQ=255)

                                                                    gCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCACCgg                                                               >  2:2449928/1‑140 (MQ=255)

                                                                     cAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGcc                                                                        >  1:2088285/1‑130 (MQ=255)

                                                                     cAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCACCggg                                                              >  2:3306405/1‑140 (MQ=255)

                                                                     cAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCACCggg                                                              >  2:2612718/1‑140 (MQ=255)

                                                                     cAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCACCggg                                                              >  1:1201207/1‑140 (MQ=255)

                                                                     cAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCACCggg                                                              >  1:1361722/1‑140 (MQ=255)

                                                                      aaaaaGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCACCGGGa                                                             <  1:2467848/140‑1 (MQ=255)

                                                                      aaaaaGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCACCGGGa                                                             <  2:1854162/140‑1 (MQ=255)

                                                                            ggCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCACCGGGATTGCCg                                                       <  1:2950811/140‑1 (MQ=255)

                                                                            ggCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCACCGGGATTGCCg                                                       <  1:1193513/140‑1 (MQ=255)

                                                                             gCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCACCGGGATTGCCgg                                                      <  2:1282366/140‑1 (MQ=255)

                                                                             gCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCACCGGGATTGCCgg                                                      <  2:2343030/140‑1 (MQ=255)

                                                                             gCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCACCGGGATTGCCgg                                                      >  2:587586/1‑140 (MQ=255)

                                                                              cGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCACCGGGATTGCCGga                                                     >  2:2968624/1‑140 (MQ=255)

                                                                                      ataatTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCACCGGGATTGCCg                                                       <  2:3277050/130‑1 (MQ=255)

                                                                                      ataatTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCACCGGGATTGCCg                                                       >  1:3277050/1‑130 (MQ=255)

                                                                                       taatTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCACCGGGATTGCCGGAGATAATGAg                                            <  1:3639069/140‑1 (MQ=255)

                                                                                         atTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCACCGGGATTGCCGGAGATAATGAGCa                                          <  1:1019987/140‑1 (MQ=255)

                                                                                          ttCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCACCGGGATTGCCgg                                                      <  1:2462282/127‑1 (MQ=255)

                                                                                          ttCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCACCGGGATTGCCGGAGATAATGAGCAt                                         >  1:2909342/1‑140 (MQ=255)

                                                                                           tCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCACCGGGATTGCCGGAGATAATGAGCATc                                        >  2:2212342/1‑140 (MQ=255)

                                                                                           tCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCACCGGGATTGCCGGAGATAATGAGCATc                                        >  2:947083/1‑140 (MQ=255)

                                                                                           tCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCACCGGGATTGCCGGAGATAATGAGCATc                                        >  2:2688128/1‑140 (MQ=255)

                                                                                           tCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCACCGGGATTGCCGGAGATAATGAGCATc                                        >  1:1948196/1‑140 (MQ=255)

                                                                                           tCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCACCGGGATTGCCGGAGATAATGAGCATc                                        >  2:117946/1‑140 (MQ=255)

                                                                                           tCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCACCGGGATTGCCGGAGATAATGAGCATc                                        <  2:3564856/140‑1 (MQ=255)

                                                                                           tCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCACCGGGATTGCCGGAGATAATGAGCATc                                        >  1:3552992/1‑140 (MQ=255)

                                                                                           tCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCACCGGGATTGCCGGAGATAATGAGCATc                                        >  1:454132/1‑140 (MQ=255)

                                                                                             cGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCACCGGGATTGCCGGAGATAATGAGCATccc                                      <  1:1355993/140‑1 (MQ=255)

                                                                                             cGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCACCGGGATTGCCGGAGATAATGAGCATccc                                      >  1:820581/1‑140 (MQ=255)

                                                                                             cGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCACCGGGATTGCCGGAGATAATGAGCATccc                                      >  1:2736586/1‑140 (MQ=255)

                                                                                             cGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCACCGGGATTGCCGGAGATAATGAGCATccc                                      >  1:1884318/1‑140 (MQ=255)

                                                                                             cGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCACCGGGATTGCCGGAGATAATGAGCATccc                                      >  2:2574913/1‑140 (MQ=255)

                                                                                              gACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCACCGGGATTGCCGGAGATAATGAGCATCCCg                                     >  1:2794154/1‑140 (MQ=255)

                                                                                               aCAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCACCGGGATTGCCGGAGATAATGAGCATCCCGa                                    >  1:620929/1‑140 (MQ=255)

                                                                                               aCAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCACCGGGATTGCCGGAGATAATGAGCATCCCGa                                    <  1:734343/140‑1 (MQ=255)

                                                                                                cAAATGCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCACCGGGATTGCCGGAGATAATGAGCATCCCGaa                                   >  2:3011790/1‑140 (MQ=255)

                                                                                                     gCCAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCACCGGGATTGCCGGAGATAATGAGCATCCCGAAACCAt                              <  2:84160/140‑1 (MQ=255)

                                                                                                      ccAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCACCGGGATTGCCGGAGATAATGAGCATCCCGAAACCATg                             <  2:3440013/140‑1 (MQ=255)

                                                                                                      ccAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCACCGGGATTGCCGGAGATAATGAGCATCCCGAAACCATg                             <  2:455478/140‑1 (MQ=255)

                                                                                                      ccAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCACCGGGATTGCCGGAGATAATGAGCATCCCGAAACCATg                             <  2:2083413/140‑1 (MQ=255)

                                                                                                      ccAGATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCACCGGGATTGCCGGAGATAATGAGCATCCCGAAACCATg                             <  1:3218174/140‑1 (MQ=255)

                                                                                                         gATTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCACCGGGATTGCCGGAGATAATGAGCATCCCGAAACCATGAAg                          >  2:202562/1‑140 (MQ=255)

                                                                                                          aTTGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCACCGGGATTGCCGGAGATAATGAGCATCCCGAAACCATGAAGa                         >  1:1324796/1‑140 (MQ=255)

                                                                                                           ttGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCACCGGGATTGCCGGAGATAATGAGCATCCCGAAACCATGAAGAc                        <  2:3608856/140‑1 (MQ=255)

                                                                                                           ttGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCACCGGGATTGCCGGAGATAATGAGCATCCCGAAACCATGAAGAc                        <  2:1115160/140‑1 (MQ=255)

                                                                                                           ttGATATTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCACCGGGATTGCCGGAGATAATGAGCATCCCGAAACCATGAAGAc                        <  1:1412820/140‑1 (MQ=255)

                                                                                                              atatTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCACCGGGATTGCCGGAGATAATGAGCATCCCGAAACCATGAAGACggg                     >  1:2130920/1‑140 (MQ=255)

                                                                                                               tatTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCACCGGGATTGCCGGAGATAATGAGCATCCCGAAACCATg                             <  2:532909/131‑1 (MQ=255)

                                                                                                               tatTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCACCGGGATTGCCGGAGATAATGAGCATCCCGAAACCATg                             >  1:532909/1‑131 (MQ=255)

                                                                                                               tatTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCACCGGGATTGCCGGAGATAATGAGCATCCCGAAACCATGAAGACGGGa                    >  1:2041192/1‑140 (MQ=255)

                                                                                                                atTTGCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCACCGGGATTGCCGGAGATAATGAGCATCCCGAAACCATGAAGACGGGaa                   <  2:1360110/140‑1 (MQ=255)

                                                                                                                    gCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCACCGGGATTGCCGGAGATAATGAGCATCCCGAAACCATGAAGACGGGAATTAt               >  2:3287526/1‑140 (MQ=255)

                                                                                                                    gCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCACCGGGATTGCCGGAGATAATGAGCATCCCGAAACCATGAAGACGGGAATTAt               >  1:2718730/1‑140 (MQ=255)

                                                                                                                    gCCCGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCACCGGGATTGCCGGAGATAATGAGCATCCCGAAACCATGAAGACGGGAATTAt               >  1:3423677/1‑140 (MQ=255)

                                                                                                                     cccGCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCACCGGGATTGCCGGAGATAATGAGCATCCCGAAACCATGAAGACGGGAATTATc              <  1:2885491/140‑1 (MQ=255)

                                                                                                                        gCTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCACCGGGATTGCCGGAGATAATGAGCATCCCGAAACCATGAAGACGGGAATTATCCAg           >  2:3192078/1‑140 (MQ=255)

                                                                                                                         cTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCACCGGGATTGCCGGAGATAATGAGCATCCCGAAACCATGAAGACGGGAATTATCCAgg          >  2:149812/1‑140 (MQ=255)

                                                                                                                         cTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCACCGGGATTGCCGGAGATAATGAGCATCCCGAAACCATGAAGACGGGAATTATCCAgg          >  1:1277972/1‑140 (MQ=255)

                                                                                                                         cTGAATAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCACCGGGATTGCCGGAGATAATGAGCATCCCGAAACCATGAAGACGGGAATTATCCAgg          <  1:3590779/140‑1 (MQ=255)

                                                                                                                            aaTAACTCTCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCACCGGGATTGCCGGAGATAATGAGCATCCCGAAACCATGAAGACGGGAATTATCCAGGCTg       <  1:2660481/140‑1 (MQ=255)

GCGTACTTTCCATGAGCGCGTCTCAAATAGATTAGAAAAATGCCAGCCAGAACAGCATGGCGTAGAGAGCAAAAAGGGCGGTATAAATAATTCCGACAAATGCCAGATTGATATTTGCCCGCTGAATAACTCGCCTCGTGATGAGCGTCAAAATAAGGCTGGCAATGGCGCAGAAAAACCAGCTGGGATAATAAGCGCCGATCACCGGGATTGCCGGAGATAATGAGCATCCCGAAACCATGAAGACGGGAATTATCCAGGCTGTTTTT  >  NC_000913/4304097‑4304365

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A