Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A17 F73 I1 R1	29	73.2	2528136	99.3%	2510439	139.3

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,314,040	G→T	R58L (CGT→CTT)	yjdP →	protein YjdP

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,314,040	0	G	T	100.0%	284.1 / NA	79	R58L (CGT→CTT)	yjdP	protein YjdP
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (48/31); total (48/31)

CTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTATGAAGATTCGCGCGACGACGGCTGGCAGCGTGAAGTGAGCGACGATCGGCGCAGACAATATGACGACCGCCGCCGCCAGTTTGAAGATCGCCGCAGGCAGCTGGACGATCGCCAGCGCCAGCTTGATCAGGAGCGTCGGCAACTGGAGGATGAAGAGCGGAGAAT  >  NC_000913/4313904‑4314175

cTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTATGAAGATTCGCGCGACGACGGCTGGCAGCTTGa                                                                                                                                      >  1:24999/1‑140 (MQ=255)

          ccACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTATGAAGATTCGCGCGACGACGGCTGGCAGCTTGAAGTGAGcgac                                                                                                                            >  2:1024471/1‑140 (MQ=255)

          ccACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTATGAAGATTCGCGCGACGACGGCTGGCAGCTTGAAGTGAGcgac                                                                                                                            >  2:917760/1‑140 (MQ=255)

           cACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAGTATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTATGAAGATTCGCGCGACGACGGCTGGCAGCTTGAAGTGAGcgacg                                                                                                                           >  2:757341/1‑140 (MQ=255)

                 tCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTATGAAGATTCGCGCGACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGgc                                                                                                                     >  1:318573/1‑140 (MQ=255)

                   cGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTATGAAGATTCGCGCGACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGgcgc                                                                                                                   >  1:705549/1‑140 (MQ=255)

                   cGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTATGAAGATTCGCGCGACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGgcgc                                                                                                                   >  2:1234638/1‑140 (MQ=255)

                   cGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTATGAAGATTCGCGCGACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGgcgc                                                                                                                   >  2:1244910/1‑140 (MQ=255)

                   cGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTATGAAGATTCGCGCGACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGgcgc                                                                                                                   >  2:666272/1‑140 (MQ=255)

                   cGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTATGAAGATTCGCGCGACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGgcgc                                                                                                                   >  1:510856/1‑140 (MQ=255)

                   cGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTATGAAGATTCGCGCGACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGgcgc                                                                                                                   >  2:639551/1‑140 (MQ=255)

                   cGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTATGAAGATTCGCGCGACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGgcgc                                                                                                                   <  2:611418/140‑1 (MQ=255)

                   cGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTATGAAGATTCGCGCGACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGgcgc                                                                                                                   >  2:681141/1‑140 (MQ=255)

                   cGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTATGAAGATTCGCGCGACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGgcgc                                                                                                                   >  1:1209399/1‑140 (MQ=255)

                    ggCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTATGAAGATTCGCGCGACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGGCGCa                                                                                                                  <  1:998993/140‑1 (MQ=255)

                     gCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTATGAAGATTCGCGCGACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGGCGCAg                                                                                                                 >  1:259338/1‑140 (MQ=255)

                     gCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTATGAAGATTCGCGCGACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGGCGCAg                                                                                                                 <  2:299404/140‑1 (MQ=255)

                       ccAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTATGAAGATTCGCGCGACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGGCGCAGAc                                                                                                               <  2:398218/140‑1 (MQ=255)

                          ggCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTATGAAGATTCGCGCGACGACGGCTGGCAGCTTGAAGTGAGCGACGATTGGCGCAGACAat                                                                                                            >  2:312666/1‑140 (MQ=255)

                          ggCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTATGAAGATTCGCGCGACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGGCGCAGACAat                                                                                                            >  1:545504/1‑140 (MQ=255)

                           gCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTATGAAGATTCGCGCGACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGgcg                                                                                                                    <  1:341590/131‑1 (MQ=255)

                           gCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTATGAAGATTCGCGCGACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGgcg                                                                                                                    >  2:341590/1‑131 (MQ=255)

                                 attatCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTATGAAGATTCGCGCGACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGGCGCAGACAATATgacga                                                                                                     <  2:449799/140‑1 (MQ=255)

                                     tCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTATGAAGATTCGCGCGACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGGCGCAGACAATATGACGAccgc                                                                                                 >  1:564553/1‑140 (MQ=255)

                                     tCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTATGAAGATTCGCGCGACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGGCGCAGACAATATGACGAccgc                                                                                                 >  2:340397/1‑140 (MQ=255)

                                          gacACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTATGAAGATTCGCGCGACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGGCGCAGACAATATGACGAccgccgccg                                                                                            <  1:692230/140‑1 (MQ=255)

                                          gacACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTATGAAGATTCGCGCGACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGGCGCAGACAATATGACGAccgccgccg                                                                                            >  2:1128819/1‑140 (MQ=255)

                                           acacCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTATGAAGATTCGCGCGACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGGCGCAGACAATATGACGACcgccgccgc                                                                                           <  1:348121/140‑1 (MQ=255)

                                           acacCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTATGAAGATTCGCGCGACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGGCGCAGACAATATGACGACcgccgccgc                                                                                           <  2:434776/140‑1 (MQ=255)

                                            cacCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTATGAAGATTCGCGCGACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGGCGCAGACAATATGACGACCgccgccgcc                                                                                          >  1:1174122/1‑140 (MQ=255)

                                             acCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTATGAAGATTCGCGCGACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGGCGCAGACAATATGACGACCGCCGCCGCCa                                                                                         >  2:1214/1‑140 (MQ=255)

                                                      aaTATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTATGAAGATTCGCGCGACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGGCGCAGACAATATGACGACCGCCGCCGCCAGTTTGAAGa                                                                                <  2:318573/140‑1 (MQ=255)

                                                              gcagGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTATGAAGATTCGCGCGACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGGCGCAGACAATATGACGACCGCCGCCGCCAGTTTGAAGATCGCCgca                                                                        >  2:1185574/1‑140 (MQ=255)

                                                              gcagGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTATGAAGATTCGCGCGACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGGCGCAGACAATATGACGACCGCCGCCGCCAGTTTGAAGATCGCCgca                                                                        >  1:492901/1‑140 (MQ=255)

                                                              gcagGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTATGAAGATTCGCGCGACCACGCCTGGCAGCTTGAAGTGAGCGACGATCGGCGCAGACAATATGACGACCGCCGCCGCCAGTTTGAAGATCGCCgca                                                                        <  2:1174122/140‑1 (MQ=255)

                                                                agGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTATGAAGATTCGCGCGACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGGCGCAGACAATATGACGACCGCCGCCGCCAGTTTGAAGATCGCCgcagg                                                                      <  1:546661/140‑1 (MQ=255)

                                                                  gCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTATGAAGATTCGCGCGACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGGCGCAGACAATATGACGACTGCCGCCGCCAGTTTGAAGATCGCCgcaggca                                                                    >  1:544706/1‑140 (MQ=255)

                                                                  gCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTATGAAGATTCGCGCGACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGGCGCAGACAATATGACGACCGCCGCCGCCAGTTTGAAGATCGCCgcaggca                                                                    >  2:657523/1‑140 (MQ=255)

                                                                  gCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTATGAAGATTCGCGCGACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGGCGCAGACAATATGACGACCGCCGCCGCCAGTTTGAAGATCGCCgcaggca                                                                    >  1:76258/1‑140 (MQ=255)

                                                                  gCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTATGAAGATTCGCGCGACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGGCGCAGACAATATGACGACCGCCGCCGCCAGTTTGAAGATCGCCgcaggca                                                                    >  1:976908/1‑140 (MQ=255)

                                                                  gCGATTAATGACGCTTATAACCCTAACCGTGGGCGAGACTATGAAGATTCGCGCGACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGGCGCAGACAATATGACGACCGCCGCCGCCAGTTTGAAGATCGCCgcaggca                                                                    >  1:438644/1‑140 (MQ=255)

                                                                   cGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTATGAAGATTCGCGCGACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGGCGCAGACAATATGACGACCGCCGCCGCCAGTTTGAAGATCGCCgcaggcag                                                                   <  1:917760/140‑1 (MQ=255)

                                                                    gATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTATGAAGATTCGCGCGACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGGCGCAGACAATATGACGACCGCCGCCGCCAGTTTGAAGa                                                                                <  1:508996/126‑1 (MQ=255)

                                                                    gATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTATGAAGATTCGCGCGACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGGCGCAGACAATATGACGACCGCCGCCGCCAGTTTGAAGa                                                                                >  2:508996/1‑126 (MQ=255)

                                                                     aTTAATGACGCTTATAACCCTGACCGTGGGCGAGACTATGAAGATTCGCGCGACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGGCGCAGACAATATGACGACCGCCGCCGCCAGTTTGAAGATCACCGCAGGCAGCt                                                                 <  1:639551/140‑1 (MQ=255)

                                                                       tAATGACGCTTATAACCCTGACCGTGGGCGAGACTATGAAGATTCGCGCGACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGGCGCAGACAATATGACGACCGCCGCCGCCAGTTTGAAGATCGCCGCAGGCAGCTgg                                                               >  1:119700/1‑140 (MQ=255)

                                                                           gACGCTTATAACCCTGACCGTGGGCGAGACTATGAAGATTCGCGCGACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGGCGCAGACAATATGACGACCGCCGCCGCCAGTTTGAAGATCGCCGCAGGCAGCTGGACGa                                                           <  1:757341/140‑1 (MQ=255)

                                                                              gCTTATAACCCTGACCGTGGGCGAGACTATGAAGATTCGCGCGACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGGCGCAGACAATATGACGACCGCCGCCGCCAGTTTGAAGATCGCCGCAGGCAGCt                                                                 <  2:1129808/131‑1 (MQ=255)

                                                                              gCTTATAACCCTGACCGTGGGCGAGACTATGAAGATTCGCGCGACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGGCGCAGACAATATGACGACCGCCGCCGCCAGTTTGAAGATCGCCGCAGGCAGCt                                                                 >  1:1129808/1‑131 (MQ=255)

                                                                              gCTTATAACCCTGACCGTGGGCGAGACTATGAAGATTCGCGCGACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGGCGCAGACAATATGACGACCGCCGCCGCCAGTTTGAAGATCGCCGCAGGCAGCTGGACGATcg                                                        >  1:463106/1‑140 (MQ=255)

                                                                                     aCCCTGACCGTGGGCGAGACTATGAAGATTCGCGCGACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGGCGCAGACAATATGACGACCGCCGCCGCCAGTTTGAAGATCGCCGCAGGCAGCTGGACGATcgccagcgc                                                 <  1:1185574/140‑1 (MQ=255)

                                                                                       ccTGACCGTGGGCGAGACTATGAAGATTCGCGCGACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGGCGCAGACAATATGACGACCGCCGCCGCCAGTTTGAAGATCGCCGCAGGCAGCTGGACGATcgccagcgcca                                               <  2:545504/140‑1 (MQ=255)

                                                                                         tGACCGTGGGCGAGACTATGAAGATTCGCGCGACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGGCGCAGACAATATGACGACCGCCGCCGCCAGTTTGAAGATCGCCGCAGGCAGCTGGACGATCgccagcgccagc                                             <  2:985605/140‑1 (MQ=255)

                                                                                         tGACCGTGGGCGAGACTATGAAGATTCGCGCGACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGGCGCAGACAATATGACGACCGCCGCCGCCAGTTTGAAGATCGCCGCAGGCAGCTGGACGATCgccagcgccagc                                             >  2:504424/1‑140 (MQ=255)

                                                                                         tGACCGTGGGCGAGACTATGAAGATTCGCGCGACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGGCGCAGACAATATGACGACCGCCGCCGCCAGTTTGAAGATCGCCGCAGGCAGCTGGACGATCgccagcgccagc                                             <  1:1143366/140‑1 (MQ=255)

                                                                                         tGACCGTGGGCGAGACTATGAAGATTCGCGCGACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGGCGCAGACAATATGACGACCGCCGCCGCCAGTTTGAAGATCGCCGCAGGCAGCTGGACGATCgccagcgccagc                                             <  1:312666/140‑1 (MQ=255)

                                                                                          gACCGTGGGCGAGACTATGAAGATTCGCGCGACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGGCGCAGACAATATGACGACCGCCGCCGCCAGTTTGAAGATCGCCGCAGGCAGCTGGACGATcgc                                                       >  2:366126/1‑129 (MQ=255)

                                                                                          gACCGTGGGCGAGACTATGAAGATTCGCGCGACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGGCGCAGACAATATGACGACCGCCGCCGCCAGTTTGAAGATCGCCGCAGGCAGCTGGACGATcgc                                                       <  1:366126/129‑1 (MQ=255)

                                                                                          gACCGTGGGCGAGACTATGAAGATTCGCGCGACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGGCGCAGACAATATGACGACCGCCGCCGCCAGTTTGAAGATCGCCGCAGGCAGCTGGACGATCGCCAGCGCCAGCt                                            >  2:643959/1‑140 (MQ=255)

                                                                                          gACCGTGGGCGAGACTATGAAGATTCGCGCGACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGGCGCAGACAATATGACGACCGCCGCCGCCAGTTTGAAGATCGCCGCAGGCAGCTGGACGATCGCCAGCGCCAGCt                                            >  1:688311/1‑140 (MQ=255)

                                                                                            ccGTGGGCGAGACTATGAAGATTCGCGCGACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGGCGCAGACAATATGACGACCGCCGCCGCCAGTTTGAAGATCGCCGCAGGCAGCTGGACGATCGCCAGCGCCAGCTTg                                          >  2:788046/1‑140 (MQ=255)

                                                                                            ccGTGGGCGAGACTATGAAGATTCGCGCGACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGGCGCAGACAATATGACGACCGCCGCCGCCAGTTTGAAGATCGCCGCAGGCAGCT‑GACGATCGCCAGCGCCAGCTTGa                                         >  1:1048814/1‑140 (MQ=255)

                                                                                            ccGTGGGCGAGACTATGAAGATTCGCGCGACGACGGCTGACAGCTTGAAGTGAGCGACGATCGGCGCAGACAATATGACGACCGCCGCCGCCAGTTTGAAGATCGCCGCAGGCAGCTGGACGATCgccagcgccagc                                             <  2:436292/137‑1 (MQ=255)

                                                                                            ccGTGGGCGAGACTATGAAGATTCGCGCGACGACGGCTGACAGCTTGAAGTGAGCGACGATCGGCGCAGACAATATGACGACCGCCGCCGCCAGTTTGAAGATCGCCGCAGGCAGCTGGACGATCgccagcgccagc                                             >  1:436292/1‑137 (MQ=255)

                                                                                                gggCGAGACTATGAAGATTCGCGCGACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGGCGCAGACAATATGACGACCGCCGCCGCCAGTTTGAAGATCGCCGCAGGCAGCTGGACGATCGCCAGCGCCAGCTTGATCa                                      >  1:536306/1‑140 (MQ=255)

                                                                                                gggCGAGACTATGAAGA‑TCGCGCGACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGGCGCAGACAATATGACGACCGCCGCCGCCAGTTTGAAGATCGCCGCAGGCAGCTGGACGATCGCCAGCGCCAGCTTGATCAg                                     >  2:1031696/1‑140 (MQ=255)

                                                                                                 ggCGAGACTATGAAGATTCGCGCGACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGGCGCAGACAATATGACGACCGCCGCCGCCAGTTTGAAGATCGCCGCAGGCAGCTGGACGATCGCCAGCGCCAGCTTGATCAg                                     >  1:622054/1‑140 (MQ=255)

                                                                                                     agaCTATGAAGATTCGCGCGACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGGCGCAGACAATATGACGACCGCCGCCGCCAGTTTGAAGATCGCCGCAGGCAGCTGGACGATCGCCAGCGCCAGCTTGATCAGGAGc                                 >  2:43477/1‑140 (MQ=255)

                                                                                                           tGAAGATTCGCGCGACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGGCGCAGACAATATGACGACCGCCGCCGCCAGTTTGAAGATCGCCGCAGGCAGCTGGACGATCGCCAGCGCCAGCTTGATCAGGAGCGTCGGc                           <  2:705549/140‑1 (MQ=255)

                                                                                                             aaGATTCGCGCGACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGGCGCAGACAATATGACGACCGCCGCCGCCAGTTTGAAGATCGCCGCAGGCAGCTGGACGATCGCCAGCGCCAGCTTGATCAGGAGCGTCGGCaa                         <  2:794613/140‑1 (MQ=255)

                                                                                                                  tCGCGCTACGACGGCTGGCAGCTTGAAGTGAGCGACGACCGGAGCAGACAATATGACGACCGCCGCCGCCAGGTTGAAGATCGCCGCAGGCAGCTGGACGATCGCCAGCGCCAGCTTGATCAGGAGCGTCGGCCACTgga                    >  2:1182426/1‑140 (MQ=255)

                                                                                                                  tCGCGCGACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGGCGCAGACAATATGACGACCGCCGCCGCCAGTTTGAAGATCGCCGCAGGCAGCTGGACGATCGCCAGCGCCAGCTTGATCAGGAGCGTCGGCAACTgga                    >  2:742484/1‑140 (MQ=255)

                                                                                                                  tCGCGCGACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGGCGCAGACAATATGACGACCGCCGCCGCCAGTTTGAAGATCGCCGCAGGCAGCTGGACGATCGCCAGCGCCAGCTTGATCAGGAGCGTCGGCAACTgga                    >  2:946239/1‑140 (MQ=255)

                                                                                                                   cgcgcgACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGGCGCAGACAATATGACGACCGCCGCCGCCAGTTTGAAGATCGCCGCAGGCAGCTGGACGATCGCCAGCGCCAGCTTGATCAGGAGCGTCGGCAACTggag                   >  1:327820/1‑140 (MQ=255)

                                                                                                                    gcgcgACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGGCGCAGACAATATGACGACCGCCGCCGCCAGTTTGAAGATCGCCGCAGGCAGCTGGACGATCGCCAGCGCCAGCTTGATCAGGAGCGTCGGCAACTggagg                  <  1:340397/140‑1 (MQ=255)

                                                                                                                     cgcgACGACGGCTGGCAGCTTGAAGTGAGCGACGATCGGCGCAGACAATATGACGACCGCCGCCGCCAGTTTGAAGATCGCCGCAGGCAGCTGGACGATCGCCAGCGCCAGCTTGATCAGGAGCGTCGGCAACTggagga                 >  2:833095/1‑140 (MQ=255)

                                                                                                                         acgacgGCTGGCAGCTTGAAGTGAGCGACGATCGGCGCAGACAATATGACGACCGCCGCCGCCAGTTTGAAGATCGCCGCAGGCAGCTGGACGATCGCCAGCGCCAGCTTGATCAGGAGCGTCGGCAACTGGAGGATGaa             >  1:636645/1‑140 (MQ=255)

                                                                                                                         acgacgGCTGGCAGCTTGAAGTGAGCGACGATCGGCGCAGACAATATGACGACCGCCGCCGCCAGTTTGAAGATCGCCGCAGGCAGCTGGACGATCGCCAGCGCCAGCTTGATCAGGAGCGTCGGCAACTGGAGGATGaa             <  2:536306/140‑1 (MQ=255)

                                                                                                                            acgGCTGGCAGCTTGAAGTGAGCGACGATCGGCGCAGACAATATGACGACCGCCGCCGCCAGTTTGAAGATCGCCGCAGGCAGCTGGACGATCGCCAGCGCCAGCTTGATCAGGAGCGTCGGCAACTGGAGGATGAagag          <  2:510856/140‑1 (MQ=255)

                                                                                                                              ggCTGGCAGCTTGAAGTGAGCGACGATCGGCGCAGACAATATGACGACCGCCGCCGCCAGTTTGAAGATCGCCGCAGGCAGCTGGACGATCGCCAGCGCCAGCTTGATCAGGAGCGTCGGCAACTGGAGGATGAAGAGCg        <  2:1079/140‑1 (MQ=255)

                                                                                                                                   gCAGCTTGAAGTGAGCGACGATCGGCGCAGACAATATGACGACCGCCGCCGCCAGTTTGAAGATCGCCGCAGGCAGCTGGACGATCGCCAGCGCCAGCTTGATCAGGAGCGTCGGCAACTGGAGGATGAAGAGCGGAGaa   <  1:1016735/140‑1 (MQ=255)

                                                                                                                                    cAGCTTGAAGTGAGCGACGATCGGCGCAGACAATATGACGACCGCCGCCGCCAGTTTGAAGATCGCCGCAGGCAGCTGGACGATCGCCAGCGCCAGCTTGATCAGGAGCGTCGGCAACTGGAGGATGAAGAGCGGAGAAt  >  1:38285/1‑140 (MQ=255)

CTCACGCTGTCCACCGTTCCGGCCCAGGCCGATATTATCGACGACACCATTGGCAATATTCAGCAGGCGATTAATGACGCTTATAACCCTGACCGTGGGCGAGACTATGAAGATTCGCGCGACGACGGCTGGCAGCGTGAAGTGAGCGACGATCGGCGCAGACAATATGACGACCGCCGCCGCCAGTTTGAAGATCGCCGCAGGCAGCTGGACGATCGCCAGCGCCAGCTTGATCAGGAGCGTCGGCAACTGGAGGATGAAGAGCGGAGAAT  >  NC_000913/4313904‑4314175

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A