Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A10 F73 I1 R1	34	113.1	3988162	99.3%	3960244	139.1

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,325,158	G→T	T3K (ACG→AAG)	phnC ←	phosphonate ABC transporter ATP binding subunit

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,325,158	0	G	T	100.0%	390.1 / NA	109	T3K (ACG→AAG)	phnC	phosphonate ABC transporter ATP binding subunit
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (49/60); total (49/60)

Only 100 of 111 total aligned reads displayed.

ACGTAAAAGGGTGGATTTTCCGGAACCCGACGGCCCAAGCAGAGCCACCATTTCACCGTGATGAATGTTCAGATCAACCGCATGCAGCGCCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCGTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACGATTTGGTTAATTAAAAGTGACTAACAGATGAAGAGTTAACGGGAATTCGATGACAGTGCGGGAGGGCGGGCCTCCCG  >  NC_000913/4325022‑4325292

aCGTAAAAGGGTGGATTTTCCGGAACCCGACGGCCCAAGCAGAGCCACCATTTCACCGTGATGAATGTTCAGATCAACCGCATGCAGCGCCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCtttt                                                                                                                                     >  2:333712/1‑140 (MQ=255)

 ggTAAAAGGGTGGATTTTCCGGATCCCGACGGCCCGAGCAGAGCCGCCATTTCACCGTGATGAATGTTCAGATCAACCGCATGCAGCGCCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTg                                                                                                                                    <  2:67061/139‑1 (MQ=255)

  gTAAAAGGGTGGATTTTCCGGAACCCGACGGCCCAAGCAGAGCCACCATTTCACCGTGATGAATGTTCAGATCAACCGCATGCAGCGCCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGc                                                                                                                                   >  1:1030826/1‑140 (MQ=255)

  gTAAAAGGGTGGATTTTCCGGAACCCGACGGCCCAAGCAGAGCCACCATTTCACCGTGATGAATGTTCAGATCAACCGCATGCAGCGCCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGc                                                                                                                                   <  2:1900172/140‑1 (MQ=255)

   tAAAAGGGTGGATTTTCCGGAACCCGACGGCCCAAGCAGAGCCACCATTTCACCGTGATGAATGTTCAGATCAACCGCATGCAGCGCCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCa                                                                                                                                  <  2:1076527/140‑1 (MQ=255)

   tAAAAGGGTGGATTTTCCGGAACCCGACGGCCCAAGCAGAGCCACCATTTCACCGTGATGAATGTTCAGATCAACCGCATGCAGCGCCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCa                                                                                                                                  <  2:876308/140‑1 (MQ=255)

          gTGGATTTTCCGGAACCCGACGGCCCAAGCAGAGCCACCATTTCACCGTGATGAATGTTCAGATCAACCGCATGCAGCGCCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCa                                                                                                                           >  1:1199442/1‑140 (MQ=255)

           tGGATTTTCCGGAACCCGACGGCCCAAGCAGAGCCACCATTTCACCGTGATGAATGTTCAGATCAACCGCATGCAGCGCCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAg                                                                                                                          >  1:560501/1‑140 (MQ=255)

            ggATTTTCCGGAACCCGACGGCCCAAGCAGAGCCACCATTTCACCGTGATGAATGTTCAGATCAACCGCATGCAGCGCCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCa                                                                                                                                  <  2:1985777/131‑1 (MQ=255)

            ggATTTTCCGGAACCCGACGGCCCAAGCAGAGCCACCATTTCACCGTGATGAATGTTCAGATCAACCGCATGCAGCGCCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGc                                                                                                                         <  2:1253202/140‑1 (MQ=255)

              aTTTTCCGGAACCCGACGGCCCAAGCAGAGCCACCATTTCACCGTGATGAATGTTCAGATCAACCGCATGCAGCGCCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCt                                                                                                                       <  2:1228413/140‑1 (MQ=255)

              aTTTTCCGGAACCCGACGGCCCAAGCAGAGCCACCATTTCACCGTGATGAATGTTCAGATCAACCGCATGCAGCGCCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCt                                                                                                                       <  2:256639/140‑1 (MQ=255)

                  tCCGGAACCCGACGGCCCAAGCAGAGCCACCATTTCACCGTGATGAATGTTCAGATCAACCGCATGCAGCGCCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCt                                                                                                                   <  2:560501/140‑1 (MQ=255)

                       aaCCCGACGGCCCAAGCAGAGCCACCATTTCACCGTGATGAATGTTCAGATCAACCGCATGCAGCGCCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTaaaaa                                                                                                              >  1:1212331/1‑140 (MQ=255)

                          ccGACGGCCCAAGCAGAGCCACCATTTCACCGTGATGAATGTTCAGATCAACCACATGCAGCGCCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGt                                                                                                           <  2:1692230/140‑1 (MQ=255)

                           cGACGGCCCAAGCAGAGCCACCATTTCACCGTGATGAATGTTCAGATCAACCGCATGCAGCGCCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTg                                                                                                          >  2:1584551/1‑140 (MQ=255)

                                 cccAAGCAGAGCCACCATTTCACCGTGATGAATGTTCAGATCAACCGCATGCAGCGCCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCa                                                                                                    >  1:1663734/1‑140 (MQ=255)

                                 cccAAGCAGAGCCACCATTTCACCGTGATGAATGTTCAGATCAACCGCATGCAGCGCCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCa                                                                                                    >  1:103873/1‑140 (MQ=255)

                                      gCAGAGCCACCATTTCACCGTGATGAATGTTCAGATCAACCGCATGCAGCGCCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTg                                                                                               <  1:1584551/140‑1 (MQ=255)

                                      gCAGAGCCACCATTTCACCGTGATGAATGTTCAGATCAACCGCATGCAGCGCCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTg                                                                                               <  2:410074/140‑1 (MQ=255)

                                           gCCACCATTTCACCGTGATGAATGTTCAGATCAACCGCATGCAGCGCCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGa                                                                                          >  1:254505/1‑140 (MQ=255)

                                           gCCACCATTTCACCGTGATGAATGTTCAGATCAACCGCATGCAGCGCCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGa                                                                                          >  1:1844679/1‑140 (MQ=255)

                                               ccaTTTCACCGTGATGAATGTTCAGATCAACCGCATGCAGCGCCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGattat                                                                                      >  2:56087/1‑140 (MQ=255)

                                               ccaTTTCACCGTGATGAATGTTCAGATCAACCGCATGCAGCGCCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGattat                                                                                      >  2:499554/1‑140 (MQ=255)

                                               ccaTTTCACCGTGATGAATGTTCAGATCAACCGCATGCAGCGCCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGattat                                                                                      >  1:197834/1‑140 (MQ=255)

                                                caTTTCACCGTGATGAATGTTCAGATCAACCGCATGCAGCGCCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGTattatt                                                                                     >  2:729437/1‑140 (MQ=255)

                                                   ttCACCGTGATGAATGTTCAGATCAACCGCATGCAGCGCCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATtgtg                                                                                  <  2:103873/140‑1 (MQ=255)

                                                    tCACCGTGATGAATGTTCAGATCAACCGCATGCAGCGCCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGCTTATTGTGa                                                                                 >  2:20457/1‑140 (MQ=255)

                                                    tCACCGTGATGAATGTTCAGATCAACCGCATGCAGCGCCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGa                                                                                 >  2:1668742/1‑140 (MQ=255)

                                                    tCACCGTGATGAATGTTCAGATCAACCGCATGCAGCGCCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGa                                                                                 <  2:352899/140‑1 (MQ=255)

                                                     cACCGTGATGAATGTTCAGATCAACCGCATGCAGCGCCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGAc                                                                                >  1:1745533/1‑140 (MQ=255)

                                                        cGTGATGAATGTTCAGATCAACCGCATGCAGCGCCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACGAt                                                                             <  2:1195574/140‑1 (MQ=255)

                                                        cGTGATGAATGTTCAGATCAACCGCATGCAGCGCCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACGAt                                                                             <  1:1295462/140‑1 (MQ=255)

                                                            atgaATGTTCAGATCAACCGCATGCAGCGCCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACGATTTgg                                                                         <  2:1361867/140‑1 (MQ=255)

                                                            atgaATGTTCAGATCAACCGCATGCAGCGCCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACGATTTgg                                                                         <  1:333712/140‑1 (MQ=255)

                                                            atgaATGTTCAGATCAACCGCATGCAGCGCCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACGATTTgg                                                                         >  1:770601/1‑140 (MQ=255)

                                                            atgaATGTTCAGATCAACCGCATGCAGCGCCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATAGTGGCGGATTATTGTGACGATTTgg                                                                         >  1:966616/1‑140 (MQ=255)

                                                                aTGTTCAGATCAACCGCATGCAGCGCCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACGATTTGGttaa                                                                     <  2:950518/140‑1 (MQ=255)

                                                                aTGTTCAGATCAACCGCATGCAGCGCCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACGATTTGGttaa                                                                     <  1:197435/140‑1 (MQ=255)

                                                                    tCAGATCAACCGCATGCAGCGCCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACGATTTGGttaattaa                                                                 <  2:1794609/140‑1 (MQ=255)

                                                                    tCAGATCAACCGCATGCAGCGCCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACGATTTGGttaattaa                                                                 >  1:1455719/1‑140 (MQ=255)

                                                                    tCAGATCAACCGCATGCAGCGCCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACGATTTGGttaattaa                                                                 <  2:1663734/140‑1 (MQ=255)

                                                                    tCAGATCAACCGCATGCAGCGCCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACGATTTGGttaattaa                                                                 <  2:1745533/140‑1 (MQ=255)

                                                                       gATCAACCGCATGCAGCGCCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACGATTTGGTTAATTAAAAg                                                              <  2:1931826/140‑1 (MQ=255)

                                                                        aTCAACCGCATGCAGCGCCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACGATTTGGTTAATTAAAAGt                                                             >  1:1469923/1‑140 (MQ=255)

                                                                        aTCAACCGCATGCAGCGCCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACGATTTGGTTAATTAAAAGt                                                             >  1:1424275/1‑140 (MQ=255)

                                                                           aaCCGGATGCAGCGCCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACGATTTGGTTAATTAAAAGTGAc                                                          >  1:895465/1‑140 (MQ=255)

                                                                            aCCGCATGCAGCGCCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACGATTTGGTTAATTAAAAGTGACt                                                         >  1:1297008/1‑140 (MQ=255)

                                                                            aCCGCATGCAGCGCCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGATCCATCGTGGCGGATTATTGTGACGATTTGGTTAATTAAAAGTGACt                                                         >  2:1052748/1‑140 (MQ=255)

                                                                             ccGCATGCAGCGCCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACGATTTGGttaattaa                                                                 <  2:1586745/131‑1 (MQ=255)

                                                                             ccGCATGCAGCGCCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACGATTTGGttaattaa                                                                 >  1:1586745/1‑131 (MQ=255)

                                                                             ccGCATGCAGCGCCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACGATTTGGTTAATTAAAAGTGACTa                                                        >  1:1518458/1‑140 (MQ=255)

                                                                             ccGCATGCAGCGCCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACGATTTGGTTAATTAAAAGTGACTa                                                        >  2:1255002/1‑140 (MQ=255)

                                                                              cGCATGCAGCGCCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACGATTTGGTTAATTAAAAGTGACTaa                                                       <  1:1052748/140‑1 (MQ=255)

                                                                              cGCATGCAGCGCCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACGATTTGGTTAATTAAAAGTGACTaa                                                       <  2:871442/140‑1 (MQ=255)

                                                                                cATGCAGCGCCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACGATTTGGTTAATTAAAAGTGACTAACa                                                     >  1:547018/1‑140 (MQ=255)

                                                                                  tGCAGCGCCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACGATTTGGTTAATTAAAAGTGa                                                           >  1:1413074/1‑132 (MQ=255)

                                                                                  tGCAGCGCCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACGATTTGGTTAATTAAAAGTGa                                                           <  2:1413074/132‑1 (MQ=255)

                                                                                  tGCAGCGCCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACGATTTGGTTAATTAAAAGTGACTAACAGa                                                   >  1:398933/1‑140 (MQ=255)

                                                                                    cAGCGCCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACGATTTGGTTAATTAAAAGTGACTAACAGATg                                                 <  2:1714924/140‑1 (MQ=255)

                                                                                    cAGCGCCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACGATTTGGTTAATTAAAAGTGACTAACAGATg                                                 <  2:1199442/140‑1 (MQ=255)

                                                                                      gcgcCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACGATTTGGTTAATTAAAAGTGACTAACAGATGaa                                               <  2:211956/140‑1 (MQ=255)

                                                                                      gcgcCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACGATTTGGTTAATTAAAAGTGACTAACAGATGaa                                               <  2:575130/140‑1 (MQ=255)

                                                                                      gcgcCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATAGTGGCGGATTATTGTGACGATTTGGTTAATTAAAAGTGACTAACAGATGaa                                               <  2:966616/140‑1 (MQ=255)

                                                                                       cgcCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACGATTTGGTTAATTAAAAGTGACTAACAGATGAag                                              >  1:1952458/1‑140 (MQ=255)

                                                                                       cgcCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACGATTTGGTTAATTAAAAGTGACTAACAGATGAag                                              >  1:219109/1‑140 (MQ=255)

                                                                                       cgcCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACGATTTGGTTAATTAAAAGTGACTAACAGATGAag                                              >  2:912052/1‑140 (MQ=255)

                                                                                        gcCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGCGGCTCCATCGTGGCGGATTATTGTGACGATTTGGTTAATTAAAAGTGACTAACAGATGAaga                                             >  2:1585677/1‑140 (MQ=255)

                                                                                        gcCTGATGCTGATTGAAGGTTTTGGCGAGCGTCTCGACACGGTTAATCTTTTGCATGCTGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGGGACGATTTTGTTAATTTAAAGTGACTAACAGATGAaga                                             >  2:1493966/1‑140 (MQ=255)

                                                                                           tGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACGATTTGGTTAATTAAAAGTGACTAACAGATGAAGAGtt                                          <  1:1545625/140‑1 (MQ=255)

                                                                                            gATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACGATTTGGTTAATTAAAAGTGACTAACAGATGAAGAGTTa                                         >  1:1023128/1‑140 (MQ=255)

                                                                                               gCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACGATTTGGTTAATTAAAAGTGACTAACAGATGAAGAGTTAACg                                      <  2:1297008/140‑1 (MQ=255)

                                                                                                 tGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACGATTTGGTTAATTAAAAGTGACTAACAGATGAAGAGTTAACggg                                    <  1:1895192/140‑1 (MQ=255)

                                                                                                 tGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACGATTTGGTTAATTAAAAGTGACTAACAGATGAAGAGTTAACggg                                    <  1:72866/140‑1 (MQ=255)

                                                                                                 tGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACGATTTGGTTAATTAAAAGTGACTAACAGATGAAGAGTTAACggg                                    <  1:792046/140‑1 (MQ=255)

                                                                                                 tGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACGATTTGGTTAATTAAAAGTGACTAACAGATGAAGAGTTAACggg                                    <  2:1023128/140‑1 (MQ=255)

                                                                                                 tGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACGATTTGGTTAATTAAAAGTGACTAACAGATGAAGAGTTAACggg                                    <  1:248661/140‑1 (MQ=255)

                                                                                                 tGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACGATTTGGTTAATTAAAAGTGACTAACAGATGAAGAGTTAACggg                                    <  2:1840194/140‑1 (MQ=255)

                                                                                                   aTTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACGATTTGGTTAATTAAAAGTGACTAACAGATGAAGAGTTAACGGGaa                                  >  2:1928951/1‑140 (MQ=255)

                                                                                                   aTTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACGATTTGGTTAATTAAAAGTGACTAACAGATGAAGAGTTAACGGGaa                                  >  2:1871529/1‑140 (MQ=255)

                                                                                                    ttGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACGATTTGGTTAATTAAAAGTGACTAACAGATGAAGAGTTAAc                                       >  2:6789/1‑134 (MQ=255)

                                                                                                    ttGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACGATTTGGTTAATTAAAAGTGACTAACAGATGAAGAGTTAAc                                       <  1:6789/134‑1 (MQ=255)

                                                                                                    ttGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACGATTTGGTTAATTAAAAGTGACTAACAGATGAAGAGTTAACGGGAAt                                 >  2:1699183/1‑140 (MQ=255)

                                                                                                         ggTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACGATTTGGTTAATTAAAAGTGACTAACAGATGAAGAGTTAACGGGAATTCGAt                            <  2:219230/140‑1 (MQ=255)

                                                                                                          gTTTTGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACGATTTGGTTAATTAAAAGTGACTAACAGATGAAGAGTTAACGGGAATTCGATg                           >  1:1384569/1‑140 (MQ=255)

                                                                                                           ttttGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGTATTATTGTGACGATTTGGTTAATTAAAAGTGACTAACAGATGAAGAGTTAACGGGAATTCGATGa                          <  1:729437/140‑1 (MQ=255)

                                                                                                           ttttGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACGATTTGGTTAATTAAAAGTGACTAACAGATGAAGAGTTAACGGGAATTCGATGa                          <  1:1649125/140‑1 (MQ=255)

                                                                                                           ttttGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACGATTTGGTTAATTAAAAGTGACTAACAGATGAAGAGTTAACGGGAATTCGATGa                          <  1:1928951/140‑1 (MQ=255)

                                                                                                           ttttGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACGATTTGGTTAATTAAAAGTGACTAACAGATGAAGAGTTAACGGGAATTCGATGa                          <  1:912052/140‑1 (MQ=255)

                                                                                                             ttGGCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACGATTTGGTTAATTAAAAGTGACTAACAGATGAAGAGTTAACGGGAATTCGATGa                          >  2:1413106/1‑138 (MQ=255)

                                                                                                               ggCGAGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACGATTTGGTTAATTAAAAGTGACTAACAGATGAAGAGTTAACGGGAATTCGATGACAGt                      >  2:671904/1‑140 (MQ=255)

                                                                                                                   aGCTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACGATTTGGTTAATTAAAAGTGACTAACAGATGAAGAGTTAACGGGAATTCGATGACAGTGCgg                  <  1:499554/140‑1 (MQ=255)

                                                                                                                     cTTCTCGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACGATTTGGTTAATTAAAAGTGACTAACAGATGAAGAGTTAACGGGAATTCGATGACAGTGCGGGa                >  1:474927/1‑140 (MQ=255)

                                                                                                                         tcGACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACGATTTGGTTAATTAAAAGTGACTAACAGATGAAGAGTTAACGGGAATTCGATGACAGTGCGGGAgggc            <  2:1469923/140‑1 (MQ=255)

                                                                                                                           gACACGGATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACGATTTGGTTAATTAAAAGTGACTAACAGATGAAGAGTTAACGGGAATTCGATGACAGTGCGGGAgggcgg          <  1:1871529/140‑1 (MQ=255)

                                                                                                                                ggATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACGATTTGGTTAATTAAAAGTGACTAACAGATGAAGAGTTAACGGGAATTCGATGACAGTGCgg                  >  1:1833173/1‑127 (MQ=255)

                                                                                                                                ggATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACGATTTGGTTAATTAAAAGTGACTAACAGATGAAGAGTTAACGGGAATTCGATGACAGTGCgg                  <  2:1833173/127‑1 (MQ=255)

                                                                                                                                ggATAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACGATTTGGTTAATTAAAAGTGACTAACAGATGAAGAGTTAACGGGAATTCGATGACAGTGCGGGAGGGCGGGCCTc     >  2:1074601/1‑140 (MQ=255)

                                                                                                                                   tAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACGATTTGGTTAATTAAAAGTGACTAACAGATGAAGAGTTAACGGGAATTCGATGACAGTGCGGGAGGGCGGGCCTCCcg  <  2:254505/140‑1 (MQ=255)

                                                                                                                                   tAATCTTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACGATTTGGTTAATTAAAAGTGACTAACAGATGAAGAGTTAACGGGAATTCGATGACAGTGCGGGAGGGCGGGCCTCCcg  <  2:219109/140‑1 (MQ=255)

ACGTAAAAGGGTGGATTTTCCGGAACCCGACGGCCCAAGCAGAGCCACCATTTCACCGTGATGAATGTTCAGATCAACCGCATGCAGCGCCTGATGCTGATTGAAGGTTTTGGCGAGCTTCTCGACACGGATAATCGTTTGCATGATGCAGCCTCCCTAAAAAAGTGGCTCCATCGTGGCGGATTATTGTGACGATTTGGTTAATTAAAAGTGACTAACAGATGAAGAGTTAACGGGAATTCGATGACAGTGCGGGAGGGCGGGCCTCCCG  >  NC_000913/4325022‑4325292

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A