Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A3 F73 I1 R1	23	178.8	6243766	99.3%	6200059	139.3

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,328,651	T→C	F506S (TTT→TCT)	crfC →	clamp‑binding sister replication fork colocalization protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,328,651	0	T	C	100.0%	489.1 / NA	128	F506S (TTT→TCT)	crfC	clamp‑binding sister replication fork colocalization protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (72/56); total (72/56)

Only 100 of 128 total aligned reads displayed.

AGTTTGCAGCTATTGCAACTCAATCAGGCGCAGGTGAGCGGCGAGATTAAACATGAAATCGAGCTGGCCCTGACCTCCGCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTTTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGCTGTGAGACACTGTTACAGACGGCGCAGAACACCATCAGTCGCGACTTTACGCTGCGTTTTGCCGAGCTTGAATCCACCCTTTGCCGGGTGTTAAC  >  NC_000913/4328515‑4328786

aGTTTGCAGCTATTGCAACTCAATCAGGCGCAGGTGAGCGGCGAGATTAAACATGAAATCGAGCTGGCCCTGACCTCCGCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCa                                                                                                                                      <  2:642945/140‑1 (MQ=255)

 gTTTGCAGCTATTGCAACTCAATCAGGCGCAGGTGAGCGGCGAGATTAAACATGAAATCGAGCTGGCCCTGACCTCCGCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAg                                                                                                                                     >  2:615824/1‑140 (MQ=255)

   ttGCAGCTATTGCAACTCAATCAGGCGCAGGTGAGCGGCGAGATTAAACATGAAATCGAGCTGGCCCTGACCTCCGCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGga                                                                                                                                   <  1:738565/140‑1 (MQ=255)

   ttGCAGCTATTGCAACTCAATCAGGCGCAGGTGAGCGGCGAGATTAAACATGAAATCGAGCTGGCCCTGACCTCCGCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGga                                                                                                                                   <  1:554156/140‑1 (MQ=255)

   ttGCAGCTATTGCAACTCAATCAGGCGCAGGTGAGCGGCGAGATTAAACATGAAATCGAGCTGGCCCTGACCTCCGCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGga                                                                                                                                   <  1:2155899/140‑1 (MQ=255)

   ttGCAGCTATTGCAACTCAAACAGGCGCAGGTGAGCGGCGAGATTAAACATGAAATCGAGCTGGCCCTGCCCTCCGCCAACCACTTTCGGCGTCAACAGCAAGACGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGga                                                                                                                                   <  2:627661/140‑1 (MQ=255)

      cAGCTATTGCAACTCAATCAGGCGCAGGTGAGCGGCGAGATTAAACATGAAATCGAGCTGGCCCTGACCTCCGCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGgatga                                                                                                                                >  1:1338847/1‑140 (MQ=255)

      cAGCTATTGCAACTCAATCAGGCGCAGGTGAGCGGCGAGATTAAACATGAAATCGAGCTGGCCCTGACCTCCGCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGgatga                                                                                                                                >  1:2977186/1‑140 (MQ=255)

           aTTGCAACTCAATCAGGCGCAGGTGAGCGGCGAGATTAAACATGAAATCGAGCTGGCCCTGACCTCCGCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCgg                                                                                                                           >  2:3119568/1‑140 (MQ=255)

            ttGCAACTCAATCAGGCGCAGGTGAGCGGCGAGATTAAACATGAAATCGAGCTGGCCCTGACCTCCGCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGa                                                                                                                          <  1:859839/140‑1 (MQ=255)

                  cTCAATCAGGCGCAGGTGAGCGGCGAGATTAAACATGAAATCGAGCTGGCCCTGACCTCCGCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGtt                                                                                                                    <  2:47236/140‑1 (MQ=255)

                    cAATCAGGCGCAGGTGAGCGGCGAGATTAAACATGAAATCGAGCTGGCCCTGACCTCCGCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTaa                                                                                                                  >  1:2542874/1‑140 (MQ=255)

                     aaTCAGGCGCAGGTGAGCGGCGAGATTAAACATGAAATCGAGCTGGCCCTGACCTCCGCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAg                                                                                                                 <  1:704991/140‑1 (MQ=255)

                      aTCAGGCGCAGGTGAGCGGCGAGATTAAACATGAAATCGAGCTGGCCCTGACCTCCGCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGTAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGc                                                                                                                <  2:1369826/140‑1 (MQ=255)

                      aTCAGGCGCAGGTGAGCGGCGAGATTAAACATGAAATCGAGCTGGCCCTGACCTCCGCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGc                                                                                                                >  1:121537/1‑140 (MQ=255)

                      aTCAGGCGCAGGTGAGCGGCGAGATTAAACATGAAATCGAGCTGGCCCTGACCTCCGCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGc                                                                                                                >  2:1689544/1‑140 (MQ=255)

                       tCAGGCGCAGGTGAGCGGCGAGATTAAACATGAAATCGAGCTGGCCCTGACCTCCGCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAg                                                                                                                 <  2:2934211/138‑1 (MQ=255)

                       tCAGGCGCAGGTGAGCGGCGAGATTAAACATGAAATCGAGCTGGCCCTGACCTCCGCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAg                                                                                                                 >  1:2934211/1‑138 (MQ=255)

                       tCAGGCGCAGGTGAGCGGCGAGATTAAACATGAAATCGAGCTGGCCCTGACCTCCGCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCg                                                                                                               >  1:2172896/1‑140 (MQ=255)

                       tCAGGCGCAGGTGAGCGGCGAGATTAAACATGAAATCGAGCTGGCCCTGACCTCCGCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCg                                                                                                               >  1:2767117/1‑140 (MQ=255)

                       tCAGGCGCAGGTGAGCGGCGAGATTAAACATGAAATCGAGCTGGCCCTGACCTCCGCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCg                                                                                                               >  1:967583/1‑140 (MQ=255)

                            cgcAGGTGAGCGGCGAGATTAAACATGAAATCGAGCTGGCCCTGACCTCCGCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGAtt                                                                                                          >  2:512038/1‑140 (MQ=255)

                            cgcAGGTGAGCGGCGAGATTAAACATGAAATCGAGCTGGCCCTGACCTCCGCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGAtt                                                                                                          <  2:2905571/140‑1 (MQ=255)

                             gcAGGTGAGCGGCGAGATTAAACATGAAATCGAGCTGGCCCTGACCTCCGCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTc                                                                                                         >  2:1983758/1‑140 (MQ=255)

                               aGGTGAGCGGCGAGATTAAACATGAAATCGAGCTGGCCCTGACCTCCGCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGt                                                                                                       >  1:244739/1‑140 (MQ=255)

                                ggTGAGCGGCGAGATTAAACATGAAATCGAGCTGGCCCTGACCTCCGCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTa                                                                                                      <  2:2951696/140‑1 (MQ=255)

                                 gTGAGCGGCGAGATTAAACATGAAATCGAGCTGGCCCTGACCTCCGCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTAc                                                                                                     <  2:2542874/140‑1 (MQ=255)

                                 gTGAGCGGCGAGATTAAACATGAAATCGAGCTGGCCCTGACCTCCGCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTAc                                                                                                     <  1:869244/140‑1 (MQ=255)

                                 gTGAGCGGCGAGATTAAACATGAAATCGAGCTGGCCCTGACCTCCGCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTAc                                                                                                     <  1:2079805/140‑1 (MQ=255)

                                 gTGAGCGGCGAGATTAAACATGAAATCGAGCTGGCCCTGACCTCCGCCAACCACTTTCTGCGTAAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTAc                                                                                                     >  1:664361/1‑140 (MQ=255)

                                  tGAGCGGCGAGATTAAACATGAAATCGAGCTGGCCCTGACCTCCGCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTAcc                                                                                                    <  2:2046467/140‑1 (MQ=255)

                                  tGAGCGGCGAGATTAAACATGAAATCGAGCTGGCCCTGACCTCCGCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTAcc                                                                                                    <  2:2315465/140‑1 (MQ=255)

                                  tGAGCGGCGAGATTAAACATGAAATCGAGCTGGCCCTGACCTCCGCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTAcc                                                                                                    <  1:1387103/140‑1 (MQ=255)

                                     gcggcgAGATTAAACATGAAATCGAGCTGGCCCTGACCTCCGCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGc                                                                                                 >  2:1586895/1‑140 (MQ=255)

                                     gcggcgAGATTAAACATGAAATCGAGCTGGCCCTGACCTCCGCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGc                                                                                                 >  2:1609131/1‑140 (MQ=255)

                                          gagaTTAAACATGAAATCGAGCTGGCCCTGCCCTCCGCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGCTGTga                                                                                            <  1:232798/140‑1 (MQ=255)

                                          gagaTTAAACATGAAATCGAGCTGGCCCTGACCTCCGCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGCTGTga                                                                                            >  2:548816/1‑140 (MQ=255)

                                           agaTTAAACATGAAATCGAGCTGGCCCTGACCTCCGCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGCTGTgag                                                                                           >  1:1343985/1‑140 (MQ=255)

                                           agaTTAAACATGAAATCGAGCTGGCCCTGACCTCCGCCAACCACTTTCTGCGTCAACAGC‑AGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGCTGTgaga                                                                                          >  1:1142022/1‑140 (MQ=255)

                                            gaTTAAACATGAAATCGAGCTGGCCCTGACCTCCGCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGCTGTgaga                                                                                          <  2:2996366/140‑1 (MQ=255)

                                              ttAAACATGAAATCGAGCTGGCCCTGACCTCCGCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGCTGTGAGaca                                                                                        <  1:3119568/140‑1 (MQ=255)

                                              ttAAACATGAAATCGAGCTGGCCCTGACCTCCGCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGCTGTGAGaca                                                                                        <  1:927910/140‑1 (MQ=255)

                                              ttAAACATGAAATCGAGCTGGCCCTGACCTCCGCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGCTGTGAGaca                                                                                        <  1:2120985/140‑1 (MQ=255)

                                              ttAAACATGAAATCGAGCTGGCCCTGACCTCCGCCAACCACTTTCTGCGTAAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGCTGTGAGaca                                                                                        <  2:664361/140‑1 (MQ=255)

                                                      gAAATCGAGCTGGCCCTGACCTCCGCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGCTGTGAGACACTGTTACa                                                                                >  2:2566289/1‑140 (MQ=255)

                                                      gAAATCGAGCTGGCCCTGACCTCCGCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGCTGTGAGACACTGTTACa                                                                                >  2:2115014/1‑140 (MQ=255)

                                                       aaaTCGAGCTGGCCCTGACCTCCGCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGCTGTGAGACACTGTTACAg                                                                               >  2:1647292/1‑140 (MQ=255)

                                                       aaaTCGAGCTGGCCCTGACCTCCGCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGCTGTGAGACACTGTTACAg                                                                               >  1:620114/1‑140 (MQ=255)

                                                        aaTCGAGCTGGCCCTGACCTCCGCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGCAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGCTGTGAGACACTGTTACAGa                                                                              >  1:1175082/1‑140 (MQ=255)

                                                        aaTCGAGCTGGCCCTGACCTCCGCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGCTGTGAGACACTGTTACAGa                                                                              <  2:244739/140‑1 (MQ=255)

                                                        aaTCGAGCTGGCCCTGACCTCCGCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGCTGTGAGACACTGTTACAGa                                                                              <  2:1058268/140‑1 (MQ=255)

                                                        aaTCGAGCTGGCCCTGACCTCCGCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGCTGTGAGACACTGTTACAGa                                                                              <  2:2765434/140‑1 (MQ=255)

                                                        aaTCGAGCTGGCCCTGACCTCCGCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGCTGTGAGACACTGTTACAGa                                                                              <  2:1172854/140‑1 (MQ=255)

                                                        aaTCGAGCTGGCCCTGACCTCCGCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGCTGTGAGACACTGTTACAGa                                                                              >  1:2205556/1‑140 (MQ=255)

                                                             aGCTGGCCCTGACCTCCGCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGCTGTGAGACACTGTTACAGACGgcg                                                                         >  2:2687926/1‑140 (MQ=255)

                                                              gCTGGCCCTGACCTCCGCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGCTGTGAGACACTGTTACAGACGgcgc                                                                        >  1:1580115/1‑140 (MQ=255)

                                                                  gCCCTGACCTCCGCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGCTGTGAGACACTGTTACAGACGGCGCAGaa                                                                    <  1:2566289/140‑1 (MQ=255)

                                                                       gACCTCCGCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGCTGTGAGACACTGTTACAGACGGCGCAGAACACCa                                                               >  2:1851515/1‑140 (MQ=255)

                                                                        aCCTCCGCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGCTGTGAGACACTGTTACAGACGgcg                                                                         <  1:2549963/129‑1 (MQ=255)

                                                                        aCCTCCGCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGCTGTGAGACACTGTTACAGACGGCGCAGAACACCAt                                                              >  2:879765/1‑140 (MQ=255)

                                                                            ccGCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGCTGTGAGACACTGTTACAGACGGCGCAGAACACCATCAGt                                                          >  2:2641559/1‑140 (MQ=255)

                                                                            ccGCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGCTGTGAGACACTGTTACAGACGGCGCAGAACACCATCAGt                                                          >  1:39886/1‑140 (MQ=255)

                                                                             cGCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGCTGTGAGACACTGTTACAGACGgcg                                                                         <  1:1758322/124‑1 (MQ=255)

                                                                             cGCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGCTGTGAGACACTGTTACAGACGgcg                                                                         <  1:1909321/124‑1 (MQ=255)

                                                                             cGCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGCTGTGAGACACTGTTACAGACGgcg                                                                         >  2:1909321/1‑124 (MQ=255)

                                                                             cGCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGCTGTGAGACACTGTTACAGACGgcg                                                                         >  2:1758322/1‑124 (MQ=255)

                                                                             cGCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGCTGTGAGACACTGTTACAGACGGCGCAGAACACCATCAGTc                                                         >  2:1369527/1‑140 (MQ=255)

                                                                              gCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGCTGTGAGACACTGTTACAGACGGCGCAGAACACCATCAGTcg                                                        <  1:2687926/140‑1 (MQ=255)

                                                                              gCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGCTGTGAGACACTGTTACAGACGGCGCAGAACACCATCAGTcg                                                        <  2:1580115/140‑1 (MQ=255)

                                                                                  aCCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGCTGTGAGACACTGTTACAGACGGCGCAGAACACCATCAGTCGCGAc                                                    >  1:605598/1‑140 (MQ=255)

                                                                                  aCCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGCTGTGAGACACTGTTACAGACGGCGCAGAACACCATCAGTCGCGAc                                                    >  1:2409259/1‑140 (MQ=255)

                                                                                   ccACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGCTGTGAGACACTGTTACAGACGGCGCAGAACACCATCAGTCGCGACt                                                   >  1:682223/1‑140 (MQ=255)

                                                                                   ccACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGCTGTGAGACACTGTTACAGACGGCGCAGAACACCATCAGTCGCGACt                                                   <  1:3040475/140‑1 (MQ=255)

                                                                                          cTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGCTGTGAGACACTGTTACAGACGGCGCAGAACACCATCAGTCGCGACTTTACGCt                                            >  2:307184/1‑140 (MQ=255)

                                                                                           tGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGCTGTGAGACACTGTTACAGACGGCGCAGAACACCATCAGTCGCGACTTTACGCTg                                           >  2:2963047/1‑140 (MQ=255)

                                                                                            gCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGCTGTGAGACACTGTTACAGACGGCGCAGAACACCATCAGTCGCGACTTTACGCTGc                                          >  2:1099122/1‑140 (MQ=255)

                                                                                             cGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGCTGTGAGACACTGTTACAGACGGCGCAGAACACCATCAGTCGCGACTTTACGCTGCg                                         >  1:1223254/1‑140 (MQ=255)

                                                                                              gTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGCTGTGAGACACTGTTACAGACGGCGCAGAACACCATCAGTCGCGACTTTACGCTGCGt                                        >  2:326286/1‑140 (MQ=255)

                                                                                                 aaCAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGCTGTGAGACACTGTTACAGACGGCGCAGAACACCATCAGTCGCGACTTTACGCTGCGtttt                                     >  1:1474784/1‑140 (MQ=255)

                                                                                                 aaCAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGCTGTGAGACACTGTTACAGACGGCGCAGAACACCATCAGTCGCGACTTTACGCTGCGtttt                                     >  1:1593334/1‑140 (MQ=255)

                                                                                                         gATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGCTGTGAGACACTGTTACAGACGGCGCAGAACACCATCAGTCGCGACTTTACGCTGCGTTTTGCCGAGCt                             <  2:1343985/140‑1 (MQ=255)

                                                                                                         gATGCGCTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGCTGTGAGACACTGTTACAGACGGCGCAGAACACCATCAGTCGCGACTTTACGCTGCGTTTTGCCGAGCt                             <  1:1973168/140‑1 (MQ=255)

                                                                                                              gcTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGCTGTGAGACACTGTTACAGACGGCGCAGAACACCATCAGTCGCGACTTTACGCTGCGTTTTGCCGAGCTTGAAt                        >  1:1939549/1‑140 (MQ=255)

                                                                                                              gcTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGCTGTGAGACACTGTTACAGACGGCGCAGAACACCATCAGTCGCGACTTTACGCTGCGTTTTGCCGAGCTTGAAt                        >  2:783695/1‑140 (MQ=255)

                                                                                                              gcTGAAGGGGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGCTAAGCGAGATTCGTACCCGCTGTGAGACACTGTTACAGACGGCGCAGAACACCATCAGTCGCGACTTTACGCTGCGTTTTGCCGAGCTTGAAt                        >  1:2069230/1‑140 (MQ=255)

                                                                                                               cTGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGCTGTGAGACACTGTTACAGACGGCGCAGAACACCATCAGTCGCGACTTTACGCTGCGTTTTGCCGAGCTTGAATc                       >  2:962069/1‑140 (MQ=255)

                                                                                                                tGAAGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGCTGTGAGACACTGTTACAGACGGCGCAGAACACCATCAGTCGCGACTTTACGCTGCGTTTTGCCGAGCTTGAATcc                      >  1:260441/1‑140 (MQ=255)

                                                                                                                   aGGTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGCTGTGAGACACTGTTACAGACGGCGCAGAACACCATCAGTCGCGACTTTACGCTGCGTTTTGCCGAGCTTGAATCCAcc                   <  1:615824/140‑1 (MQ=255)

                                                                                                                     gTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGCTGTGAGACACTGTTACAGACGGCGCAGAACACCATCAGTCGCGACTTTACGCTGCGTTTTGCCGAGCTTGAATCCACCCt                 >  1:974841/1‑140 (MQ=255)

                                                                                                                     gTGCAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGCTGTGAGACACTGTTACAGACGGCGCAGAACACCATCAGTCGCGACTTTACGCTGCGTTTTGCCGAGCTTGAATCCACCCt                 >  2:1230043/1‑140 (MQ=255)

                                                                                                                        cAGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGCTGTGAGACACTGTTACAGACGGCGCAGAACACCATCAGTCGCGACTTTACGCTGCGTTTTGCCGAGCTTGAATCCACCCTTTg              >  2:2365374/1‑140 (MQ=255)

                                                                                                                         aGTTAGCCGCCTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGCTGTGAGACACTGTTACAGACGGCGCAGAACACCATCAGTCGCGACTTTACGCTGCGTTTTGCCGAGCTTGAATCCACCCTTTGc             <  2:158402/140‑1 (MQ=255)

                                                                                                                               ccgccTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGCTGTGAGACACTGTTACAGACGGCGCAGAACACCATCAGTCGCGACTTTACGCTGCGTTTTGCCGAGCTTGAATCCACCCTTTGCCGGgtg       >  2:3084160/1‑140 (MQ=255)

                                                                                                                                cgccTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGCTGTGAGACACTGTTACAGACGGCGCAGAACACCATCAGTCGCGACTTTACGCTGCGTTTTGCCGAGCTTGAATCCACCCTTTGcc            >  1:416755/1‑134 (MQ=255)

                                                                                                                                cgccTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGCTGTGAGACACTGTTACAGACGGCGCAGAACACCATCAGTCGCGACTTTACGCTGCGTTTTGCCGAGCTTGAATCCACCCTTTGcc            >  1:1636868/1‑134 (MQ=255)

                                                                                                                                cgccTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGCTGTGAGACACTGTTACAGACGGCGCAGAACACCATCAGTCGCGACTTTACGCTGCGTTTTGCCGAGCTTGAATCCACCCTTTGcc            <  2:1636868/134‑1 (MQ=255)

                                                                                                                                  ccTTGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGCTGTGAGACACTGTTACAGACGGCGCAGAACACCATCAGTCGCGACTTTACGCTGCGTTTTGCCGAGCTTGAATCCACCCTTTGCCGGGTGTTa    >  2:3112781/1‑140 (MQ=255)

                                                                                                                                    ttGTCTCAGGTTGATTCGGAGCCGTTAAGCGAGATTCGTACCCGCTGTGAGACACTGTTACAGACGGCGCAGAACACCATCAGTCGCGACTTTACGCTGCGTTTTGCCGAGCTTGAATCCACCCTTTGCCGGGTGTTAAc  <  2:328692/140‑1 (MQ=255)

                                                                                                                                    ttGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGCTGTGAGACACTGTTACAGACGGCGCAGAACACCATCAGTCGCGACTTTACGCTGCGTTTTGCCGAGCTTGAATCCACCCTTTGCCGGGTGTTAAc  <  1:879765/140‑1 (MQ=255)

                                                                                                                                    ttGTCTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGCTGTGAGACACTGTTACAGACGGCGCAGAACACCATCAGTCGCGACTTTACGCTGCGTTTTGCCGAGCTTGAATCCACCCTTTGCCGGGTGTTAAc  <  2:1175082/140‑1 (MQ=255)

AGTTTGCAGCTATTGCAACTCAATCAGGCGCAGGTGAGCGGCGAGATTAAACATGAAATCGAGCTGGCCCTGACCTCCGCCAACCACTTTCTGCGTCAACAGCAAGATGCGCTGAAGGTGCAGTTAGCCGCCTTGTTTCAGGATGATTCGGAGCCGTTAAGCGAGATTCGTACCCGCTGTGAGACACTGTTACAGACGGCGCAGAACACCATCAGTCGCGACTTTACGCTGCGTTTTGCCGAGCTTGAATCCACCCTTTGCCGGGTGTTAAC  >  NC_000913/4328515‑4328786

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A