Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F73 I1 R1 28 161.3 5699896 99.3% 5659996 139.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,154,748 C→A E157D (GAG→GAT)  yqhC ← DNA‑binding transcriptional activator YqhC

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,154,7480CA100.0% 540.5 / NA 150E157D (GAG→GAT) yqhCDNA‑binding transcriptional activator YqhC
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (73/77);  total (73/77)

Only 100 of 156 total aligned reads displayed.

ACCAGCGCCAGTAACGCGCCGCCGCAAGGTCCGGTCAGCACGTAGTACAGAATTTCGCGGATGATCTGTTTGCCGAGAATACGCGCATCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATCTCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGCTCATCTTCGCCAATGTCCATCAACAGTTCCTGTAACTGCAAAATATCGACATTGAGACGCAACCCTGCCAGCGGCACCT  >  NC_000913/3154611‑3154884
                                                                                                                                         |                                                                                                                                        
aCCAGCGCCAGTAACGCGCCGCCGCAAGGTCCGGTCAGCACGTAGTACAGAATTTCGCGGATGATCTGTTTGCCGAGAATACGCGCATCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAAtatc                                                                                                                                        >  2:1086194/1‑140 (MQ=255)
 ccAGCGCCAGTAACGCGCCGCCGCAAGGTCCGGTCAGCACGTAGTACAGAATTTCGCGGATGATCTGTTTGCCGAGAATACGCGCATCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAGATatct                                                                                                                                       <  2:37865/140‑1 (MQ=255)
 ccAGCGCCAGTAACGCGCCGCCGCAAGGTCCGGTCAGCACGTAGTACAGAATTTCGCGGATGATCTGTTTGCCGAGAATACGCGCATCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATatct                                                                                                                                       <  1:1451280/140‑1 (MQ=255)
  cAGCGCCAGTAACGCGCCGCCGCAAGGTCCGGTCAGCACGTAGTACAGAATTTCGCGGATGATCTGTTTGCCGAGAATACGCGCATCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATAtctt                                                                                                                                      <  1:196106/140‑1 (MQ=255)
      gcCAGTAACGCGCCGCCGCAAGGTCCGGTCAGCACGTAGTACAGAATTTCGCGGATGATCTGTTTGCCGAGAATACGCGCATCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGa                                                                                                                                  <  2:2391706/140‑1 (MQ=255)
          gTAACGCGCCGCCGCAAGGTCCGGTCAGCACGTAGTACAGAATTTCGCGGATGATCTGTTTGCCGAGAATACGCGCATCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAAc                                                                                                                              >  1:2398638/1‑140 (MQ=255)
              cgcgCCGCCGCAAGGTCCGGTCAGCACGTAGTACAGAATTTCGCGGATGATCTGTTTGCCGAGAATACGCGCATCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTgg                                                                                                                          <  1:2209008/140‑1 (MQ=255)
              cgcgCCGCCGCAAGGTCCGGTCAGCACGTAGTACAGAATTTCGCGGATGATCTGTTTGCCGAGAATACGCGCATCCAGTGGTCGCTCCATCACGTCGAGTAACCACTCCGCCGCGCATAAAATATCTTCTGATAACGTgg                                                                                                                          <  2:2769432/140‑1 (MQ=255)
               gcgcCGCCGCAAGGTCCGGTCAGCACGTAGTACAGAGTTTCGCGGATGATCTGTTTGCCGAGAATACGCGCATCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGc                                                                                                                         <  1:133470/140‑1 (MQ=255)
               gcgcCGCCGCAAGGTCCGGTCAGCACGTAGTACAGAATTTCGCGGATGATCTGTTTGCCGAGAATACGCGCATCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGc                                                                                                                         >  2:1556140/1‑140 (MQ=255)
               gcgcCGCCGCAAGGTCCGGTCAGCACGTAGTACAGAATTTCGCGGATGATCTGTTTGCCGAGAATACGCGCATCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGc                                                                                                                         <  2:2723040/140‑1 (MQ=255)
                    gccgcAAGGTCCGGTCAGCACGTAGTACAGAATTTCGCGGATGATCTGTTTGCCGAGAATACGCGCATCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGt                                                                                                                    >  1:2494185/1‑140 (MQ=255)
                    gccgcAAGGTCCGGTCAGCACGTAGTACAGAATTTCGCGGATGATCTGTTTGCCGAGAATACGCGCATCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGt                                                                                                                    >  2:315875/1‑140 (MQ=255)
                     ccgcAAGGTCCGGTCAGCACGTAGTACAGAATTTCGCGGATGATCTGTTTGCCGAGAATACGCGCATCCAGTGGTCGCTCCATCACGTCGGGTAACCGCTCCGCCGCACATAAAATATCTTCTGATAACGTGGCGGAGtt                                                                                                                   >  1:325158/1‑140 (MQ=255)
                        cAAGGTCCGGTCAGCACGTAGTACAGAATTTCGCGGATGATCTGTTTGCCGAGAATACGCGCATCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAAt                                                                                                                <  2:2331924/140‑1 (MQ=255)
                                ggTCAGCACGTAGTACAGAATTTCGCGGATGATCTGTTTGCCGAGAATACGCGCATCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCgctgg                                                                                                        <  2:2176220/140‑1 (MQ=255)
                                     gCACGTAGTACAGAATTTCGCGGATGATCTGTTTGCCGAGAATACGCGCATCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGcc                                                                                                   >  1:383907/1‑140 (MQ=255)
                                      cacaTAGTACAGAATTTCGCGGATGATCTGTTTGCCGAGAATACGCGCATCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCa                                                                                                  >  2:175328/1‑140 (MQ=255)
                                      cACGTAGTACAGAATTTCGCGGATGATCTGTTTGCCGAGAATACGCGCATCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCgctgg                                                                                                        <  1:515360/134‑1 (MQ=255)
                                      cACGTAGTACAGAATTTCGCGGATGATCTGTTTGCCGAGAATACGCGCATCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCa                                                                                                  >  2:2219964/1‑140 (MQ=255)
                                       aCGTAGTACAGAATTTCGCGGATGATCTGTTTGCCGAGAATACGCGCATCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCAt                                                                                                 >  2:2490618/1‑140 (MQ=255)
                                         gtagtaCAGAATTTCGCGGATGATCTGTTTGCCGAGAATACGCGCATCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCg                                                                                               <  1:1171401/140‑1 (MQ=255)
                                          tagtaCAGAATTTCGCGGATGATCTGTTTGCCGAGAATACGCGCATCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGa                                                                                              >  2:2363676/1‑140 (MQ=255)
                                          tagtaCAGAATTTCGCGGATGATCTGTTTGCCGAGAATACGCGCATCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGa                                                                                              <  1:2296995/140‑1 (MQ=255)
                                           agtaCAGAATTTCGCGGATGATCTGTTTGCCGAGAATACGCGCATCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGAc                                                                                             >  1:1848172/1‑140 (MQ=255)
                                               cAGAATTTCGCGGATGATCTGTTTGCCGAGAATACGCGCATCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCt                                                                                         <  1:2545743/140‑1 (MQ=255)
                                                aGAATTTCGCGGATGATCTGTTTGCCGAGAATACGCGCATCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTg                                                                                        >  2:2269024/1‑140 (MQ=255)
                                                 gAATTTCGCGGATGATCTGTTTGCCGAGAATACGCGCATCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTgg                                                                                       <  1:2269024/140‑1 (MQ=255)
                                                  aaTTTCGCGGATGATCTGTTTGCCGAGAATACGCGCATCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGa                                                                                      >  2:1680466/1‑140 (MQ=255)
                                                  aaTTTCGCGGATGATCTGTTTGCCGAGAATACGCGCATCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGa                                                                                      <  1:2720036/140‑1 (MQ=255)
                                                   aTTTCGCGGATGATCTGTTTGCCGAGAATACGCGCATCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGaa                                                                                     >  1:1648263/1‑140 (MQ=255)
                                                    tttCGCGGATGATCTGTTTGCCGAGAATACGCGCATCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGaaa                                                                                    >  1:806610/1‑140 (MQ=255)
                                                    tttCGCGGATGATCTGTTTGCCGAGAATACGCGCATCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGaaa                                                                                    >  2:2253100/1‑140 (MQ=255)
                                                     ttCGCGGATGATCTGTTTGCCGAGAATACGCGCATCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAAt                                                                                   >  2:1707309/1‑140 (MQ=255)
                                                       cgcgGATGATCTGTTTGCCGAGAATATGCGCATCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGc                                                                                 >  2:531028/1‑140 (MQ=255)
                                                       cgcgGATGATCTGTTTGCCGAGAATACGCGCATCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGc                                                                                 <  2:879278/140‑1 (MQ=255)
                                                       cgcgGATGATCTGTTTGCCGAGAATACGCGCATCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGc                                                                                 >  1:1312/1‑140 (MQ=255)
                                                       cgcgGATGATCTGTTTGCCGAGAATACGCGCATCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGc                                                                                 >  1:996734/1‑140 (MQ=255)
                                                       cgcgGATGATCTGTTTGCCGAGAATACGCGCATCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGc                                                                                 >  1:61600/1‑140 (MQ=255)
                                                       cgcgGATGATCTGTTTGCCGAGAATACGCGCATCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGc                                                                                 >  1:40144/1‑140 (MQ=255)
                                                       cgcgGATGATCTGTTTGCCGAGAATACGCGCATCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGc                                                                                 >  1:1937326/1‑140 (MQ=255)
                                                       cgcgGATGATCTGTTTGCCGAGAATACGCGCATCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGc                                                                                 >  2:2284902/1‑140 (MQ=255)
                                                            atgatCTGTTTGCCGAGAATACGCGCATCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGCTCATc                                                                            <  2:1823768/140‑1 (MQ=255)
                                                              gatCTGTTTGCCGAGAATACGCGCATCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGCTCATCtt                                                                          <  2:1747423/140‑1 (MQ=255)
                                                                  tGTTTGCCGAGAATACGCGCATCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATGACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGCTCATCTTCGcc                                                                      <  1:1358341/140‑1 (MQ=255)
                                                                  tGTTTGCCGAGAATACGCGCATCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGCTCATCTTCGcc                                                                      <  2:1204399/140‑1 (MQ=255)
                                                                    tttGCCGAGAATACGCGCATCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGCTCATCTTCGCCaa                                                                    >  1:2278544/1‑140 (MQ=255)
                                                                    tttGCCGAGAATACGCGCATCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGCTCATCTTCGCCaa                                                                    <  1:2150491/140‑1 (MQ=255)
                                                                    tttGCCGAGAATACGCGCATCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGCTCATCTTCGCCaa                                                                    <  1:305077/140‑1 (MQ=255)
                                                                    tttGCCGAGAATACGCGCATCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGCTCATCTTCGCCaa                                                                    <  1:1680466/140‑1 (MQ=255)
                                                                      tGCCGAGAATACGCGCATCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGCTCATCTTCGCCAATg                                                                  >  1:1539743/1‑140 (MQ=255)
                                                                      tGCCGAGAATACGCGCATCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCACATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGCTCATCTTCGCCAATg                                                                  <  2:325158/140‑1 (MQ=255)
                                                                         cGAGAATACGCGCATCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGTATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGCTCATCTTCGcc                                                                      <  1:2188509/133‑1 (MQ=255)
                                                                         cGAGAATACGCGCATCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGCTCATCTTCGcc                                                                      >  2:2188509/1‑133 (MQ=255)
                                                                         cGAGAATACGCGCATCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGCTCATCTTCGCCAATGTcc                                                               <  1:516679/140‑1 (MQ=255)
                                                                              aTACGCGCATCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGCTCATCTTCGCCAATGTCCATc                                                            >  2:943893/1‑138 (MQ=255)
                                                                              aTACGCGCATCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGCTCATCTTCGCCAATGTCCATc                                                            <  1:943893/138‑1 (MQ=255)
                                                                              aTACGCGCATCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGCTCATCTTCGCCAATGTCCATCaa                                                          <  1:2796348/140‑1 (MQ=255)
                                                                              aTACGCGCATCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGCTCATCTTCGCCAATGTCCATCaa                                                          <  1:1754580/140‑1 (MQ=255)
                                                                              aTACGCGCATCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGCTCATCTTCGCCAATGTCCATCaa                                                          <  2:2067887/140‑1 (MQ=255)
                                                                              aTACGCGCATCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGCTCATCTTCGCCAATGTCCATCaa                                                          <  2:1848172/140‑1 (MQ=255)
                                                                              aTACGCGCATCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGCTCATCTTCGCCAATGTCCATCaa                                                          <  1:986618/140‑1 (MQ=255)
                                                                                  gcgcATCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGCTCATCTTCGCCAATGTCCATCaa                                                          <  2:1388926/136‑1 (MQ=255)
                                                                                  gcgcATCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGCTCATCTTCGCCAATGTCCATCAACAGt                                                      <  2:1351249/140‑1 (MQ=255)
                                                                                      aTCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGCTCATCCTCGCCAATGTCCATCAACAGTTCCt                                                  >  2:474540/1‑140 (MQ=255)
                                                                                       tCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGCTCATCTTCGCCAATGTCCATCAACa                                                        >  2:540686/1‑133 (MQ=255)
                                                                                       tCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGCTCATCTTCGCCAATGTCCATCAACa                                                        <  1:540686/133‑1 (MQ=255)
                                                                                       tCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGCTCATCTTCGCCAATGTCCATCAACAGTTCCTg                                                 >  1:130106/1‑140 (MQ=255)
                                                                                       tCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGCTCATCTTCGCCAATGTCCATCAACAGTTCCTg                                                 >  1:70781/1‑140 (MQ=255)
                                                                                        ccAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGCTCATCTTCGCCAATGTCCATCAACAGTTCCTGt                                                <  2:1648263/140‑1 (MQ=255)
                                                                                        ccAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGCTCATCTTCGCCAATGTCCATCAACAGTTCCTGt                                                <  2:2219475/140‑1 (MQ=255)
                                                                                          aGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGCTCATCTTCGCCAATGTCCATCAACAGTTCCTGTaa                                              <  2:70781/140‑1 (MQ=255)
                                                                                           gTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGCTCATCTTCGCCAATGTCCATCaa                                                          <  2:1986787/127‑1 (MQ=255)
                                                                                           gTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGCTCATCTTCGCCAATGTCCATCaa                                                          >  1:1986787/1‑127 (MQ=255)
                                                                                                  cTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGCTCATCTTCGCCACTGTCCATCAACAGTTCCTGTAACTGCaaaa                                      >  2:1253354/1‑140 (MQ=255)
                                                                                                  cTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGCTCATCTTCGCCAATGTCCATCAACAGTTCCTGTa                                               <  1:2108283/131‑1 (MQ=255)
                                                                                                  cTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGCTCATCTTCGCCAATGTCCATCAACAGTTCCTGTAACTGCaaaa                                      >  1:1129735/1‑140 (MQ=255)
                                                                                                  cTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGCTCATCTTCGCCAATGTCCATCAACAGTTCCTGTAACTGCaaaa                                      >  2:2752071/1‑140 (MQ=255)
                                                                                                     cATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGCTCATCTTCGCCAATGTCCATCAACAGTTCCTGTAACTGCAAAatat                                   <  1:1086194/140‑1 (MQ=255)
                                                                                                            tCGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGCTCATCTTCGCCAATGTCCATCAACAGTTCCTGTAACTGCaaaa                                      <  1:1033768/130‑1 (MQ=255)
                                                                                                             cGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGCTCATCTTCGCCAATGTCCATCAACAGTTCCTGTAACTGCAAAATATCGACATTg                           >  2:1545624/1‑140 (MQ=255)
                                                                                                             cGAGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGCTCATCTTCGCCAATGTCCATCAACAGTTCCTGTAACTGCAAAATATCGACATTg                           <  1:1493176/140‑1 (MQ=255)
                                                                                                               aGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGCTCATCTTCGCCAATGTCCATCAACAGTTCCTGTAACTGCAAAATATCGACATTgag                         >  2:2634906/1‑140 (MQ=255)
                                                                                                               aGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGCTCATCTTCGCCAATGTCCATCAACAGTTCCTGTAACTGCAAAATATCGACATTgag                         >  1:2821487/1‑140 (MQ=255)
                                                                                                               aGTAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGCTCATCTTCGCCAATGTCCATCAACAGTTCCTGTAACTGCAAAATATCGACATTgag                         >  2:2241821/1‑140 (MQ=255)
                                                                                                                 tAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGCTCATCTTCGCCAATGTCCATCAACAGTTCCTGTAACTGCAAAATATCGACATTGAGAc                       >  2:1378298/1‑140 (MQ=255)
                                                                                                                 tAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGCTCATCTTCGCCAATGTCCATCAACAGTTCCTGTAACTGCAAAATATCGACATTGAGAc                       <  2:730915/140‑1 (MQ=255)
                                                                                                                 tAACCGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGCTCATCTTCGCCAATGTCCATCAACAGTTCCTGTAACTGCAAAATATCGACATTGAGAc                       <  1:887205/140‑1 (MQ=255)
                                                                                                                    ccGCTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGCTCATCTTCGCCAATGTCCATCAACAGTTCCTGTAACTGCAAAATATCGACATTGAGACGCa                    <  2:2278544/140‑1 (MQ=255)
                                                                                                                       cTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGCTCATCTTCGCCAATGTCCATCAACAGTTCCTGTAACTGCAAAATATCGACATTGAGACGCAAcc                 >  2:2662399/1‑140 (MQ=255)
                                                                                                                       cTCCGCCGCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGCTCATCTTCGCCAATGTCCATCAACAGTTCCTGTAACTGCAAAATATCGACATTGAGACGCAAcc                 >  1:2086253/1‑140 (MQ=255)
                                                                                                                         ccgccgCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGCTCATCTTCGCCAATGTCCATCAACAGTTCCTGTAACTGCAAAATATCGACATTGAGACGCAACCCt               >  1:283557/1‑140 (MQ=255)
                                                                                                                         ccgccgCGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGCTCATCTTCGCCAATGTCCATCAACAGTTCCTGTAACTGCAAAATATCGACATTGAGACGCAACCCt               <  2:2398638/140‑1 (MQ=255)
                                                                                                                          cgccgcGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGCTCATCTTCGCCAATGTCCATCAACAGTTCCTGTAACTGCAAAATATCGACATTGAGACGCAACCCTg              >  2:2435848/1‑140 (MQ=255)
                                                                                                                           gccgcGCATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGCTCATCTTCGCCAATGTCCATCAACAGTTCCTGTAACTGCAAAATATCGACATTGAGACGCAACCCTGc             >  2:849947/1‑140 (MQ=255)
                                                                                                                               cgcATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGCTCATCTTCGCCAATGTCCATCAACAGTTCCTGTAACTGCAAAATATCGACATTGAGACGCAACCCTGCCAGc         >  2:1987638/1‑140 (MQ=255)
                                                                                                                               cgcATAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGCTCATCTTCGCCAATGTCCATCAACAGTTCCTGTAACTGCAAAATATCGACATTGAGACGCAACCCTGCCAGc         >  2:1344427/1‑140 (MQ=255)
                                                                                                                                  aTAAAATATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGCTCATCTTCGCCAATGTCCATCAACAGTTCCTGTAACTGCAAAATATCGACATTGAGACGCAACCCTGCCAGCGGc      <  2:383907/140‑1 (MQ=255)
                                                                                                                                      aaTATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGCTCATCTTCGCCAATGTCCATCAACAGTTCCTGTAACTGCAAAATATCGACATTGAGACGCAACCCTGCCAGCGGCACct  <  1:2435848/140‑1 (MQ=255)
                                                                                                                                      aaTATCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGCTCATCTTCGCCAATGTCCATCAACAGTTCCTGTAACTGCAAAATATCGACATTGAGACGCAACCCTGCCAGCGGCACct  <  1:2306993/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                        
ACCAGCGCCAGTAACGCGCCGCCGCAAGGTCCGGTCAGCACGTAGTACAGAATTTCGCGGATGATCTGTTTGCCGAGAATACGCGCATCCAGTGGTCGCTCCATCACGTCGAGTAACCGCTCCGCCGCGCATAAAATCTCTTCTGATAACGTGGCGGAGTTAATCCCGCTGGCTGCCATCGACGGCTGGAAATGCTCATCTTCGCCAATGTCCATCAACAGTTCCTGTAACTGCAAAATATCGACATTGAGACGCAACCCTGCCAGCGGCACCT  >  NC_000913/3154611‑3154884

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A