Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F73 I1 R1
|
30 |
54.0 |
1878228 |
99.2% |
1863202 |
139.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,168,720 |
G→T |
intergenic (‑176/+29) |
mqsR ← / ← ygiV |
mRNA interferase/toxin of the MqsR‑MqsA toxin‑antitoxin system/DNA‑binding transcriptional repressor YgiV |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,168,720 | 0 | G | T | 98.2%
| 188.1
/ ‑2.8
| 56 | intergenic (‑176/+29) | mqsR/ygiV | mRNA interferase/toxin of the MqsR‑MqsA toxin‑antitoxin system/DNA‑binding transcriptional repressor YgiV |
| Reads supporting (aligned to +/- strand): ref base G (1/0); new base T (34/21); total (35/21) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.92e-01 |
AATTACAGCAATGAAAAAGCACCTAAAAGGTTAGTTAGATGTACGGAGATAGTGACCACACAAAACGTATTCTTTAAGGAAAGTGATTGACCATATAAGAAAGTGGCGCATTAGTAGCGCCAGTTTGAAGCAGGAATTTATAAGGGAAGCTGGAGTCAGGCATCACGCCAACGGCACATAAACATCCGTTTCCAGTCGCTGCTCTGTCACCCCTTCGGCAAGATTGGTGTAGTGAAACAGAATCGGTGCTTTACGCATTTTCTCGCC > NC_000913/3168587‑3168853
|
aaTTACAGCAATGAAAAAGCACCTAAAAGGTTAGTTAGATGTACGGAGATAGTGACCACACAAAACGTATTCTTTAAGGAAAGTGATTGACCATATAAGAAAGTGGCGCATTAGTAGCGCCAGTTTGAAGCAGTAATTta > 1:687432/1‑140 (MQ=255)
gCAATGAAAAAGCACCTAAAAGGTTAGTTAGATGTACGGAGATAGTGACCACACAAAACGTATTCTTTAAGGAAAGTGATTGACCATATAAGAAAGTGGCGCATTAGTAGCGCCAGTTTGAAGCACTAATTTATAAGGGa > 1:762683/1‑140 (MQ=255)
cAATGAAAAAGCACCTAAAAGGTTAGTTAGATGTACGGAGATAGTGACCACACAAAACGTATTCTTTAAGGAAAGTGATTGACCATATAAGAAAGTGGCGCATTAGTAGCGCCAGTTTGAAGCAGTAATTTATAAGGGaa > 2:521979/1‑140 (MQ=255)
aTGAAAAAGCACCTAAAAGGTTAGTTAGATGTACGGAGATAGTGACCACACAAAACGTATTCTTTAAGGAAAGTGATTGACCATATAAGAAAGTGGCGCATTAGTAGCGCCAGTTTGAAGCAGTAATTTATAAGGGAAGc < 2:152336/140‑1 (MQ=255)
gAAAAAGCACCTAAAAGGTTAGTTAGATGTACGGAGATAGTGACCACACAAAACGTATTCTTTAAGGAAAGTGATTGACCATATAAGAAAGTGGCGCATTAGTAGCGCCAGTTTGAAGCAGTAATTTATAAGGGAAGCTg < 1:601224/140‑1 (MQ=255)
gAAAAAGCACCTAAAAGGTTAGTTAGATGTACGGAGATAGTGACCACACAAAACGTATTCTTTAAGGAAAGTGATTGACCATATAAGAAAGTGGCGCATTAGTAGCGCCAGTTTGAAGCACTAATTTATAAGGGAAGCTg < 2:762683/140‑1 (MQ=255)
aaGCACCTAAAAGGTTAGTTAGATGTACGGAGATAGTGACCACACAAAACGTATTCTTTAAGGAAAGTGATTGACCATATAAGAAAGTGGCGCATTAGTAGCGCCAGTTTGAAGCAGTAATTTATAAGGGAAGCTGGAGt < 1:376893/140‑1 (MQ=255)
aaGCACCTAAAAGGTTAGTTAGATGTACGGAGATAGTGACCACACAAAACGTATTCTTTAAGGAAAGTGATTGACCATATAAGAAAGTGGCGCATTAGTAGCGCCAGTTTGAAGCAGTAATTTATAAGGGAAGCTGGAGt > 1:455922/1‑140 (MQ=255)
aCCTAAAAGGTTAGTTAGATGTACGGAGATAGTGACCACACAAAACGTATTCTTTAAGGAAAGTGATTGACCATATAAGAAAGTGGCGCATTAGTAGCGCCAGTTTGAAGCAGTAATTTATAAGGGAAGCTGGAGTCAgg > 1:511702/1‑140 (MQ=255)
ccTAAAAGGTTAGTTAGATGTACGGAGATAGTGACCACACAAAACGTATTCTTTAAGGAAAGTGATTGACCATATAAGAAAGTGGCGCATTAGTAGCGCCAGTTTGAAGCAGTAATTTATAAGGGAAGCTGGAGTCAGGc > 2:679352/1‑140 (MQ=255)
tAAAAGGTTAGTTAGATGTACGGAGATAGTGACCACACAAAACGTATTCTTTAAGGAAAGTGATTGACCATATAAGAAAGTGGCGCATTAGTAGCGCCAGTTTGAAGCAGTAATTTATAAGGGAAGCTGGAGTCAGGCAt < 2:687432/140‑1 (MQ=255)
aaGGTTAGTTAGATGTACGGAGATAGTGACCACACAAAACGTATTCTTTAAGGAAAGTGATTGACCATATAAGAAAGTGGCGCATTAGTAGCGCCAGTTTGAAGCAGTAATTTATAAGGGAAGCTGGAGTCAGGCATCAc > 2:822175/1‑140 (MQ=255)
agttagATGTACGGAGATAGTGACCACACAAAACGTATTCTTTAAGGAAAGTGATTGACCATATAAGAAAGTGGCGCATTAGTAGCGCCAGTTTGAAGCAGTAATTTATAAGGGAAGCTGGAGTCAGGCATCACGCCAAc > 1:163635/1‑140 (MQ=255)
agttagATGTACGGAGATAGTGACCACACAAAACGTATTCTTTAAGGAAAGTGATTGACCATATAAGAAAGTGGCGCATTAGTAGCGCCAGTTTGAAGCAGTAATTTATAAGGGAAGCTGGAGTCAGGCATCACGCCAAc > 2:711063/1‑140 (MQ=255)
ttagATGTACGGAGATAGTGACCACACAAAACGTATTCTTTAAGGAAAGTGATTGACCATATAAGAAAGTGGCGCATTAGTAGCGCCAGTTTGAAGCAGTAATTTATAAGGGAAGCTGGAGTCAGGCATCACGCCAACgg > 1:721782/1‑140 (MQ=255)
gATGTACGGAGATAGTGACCACACAAAACGTATTCTTTAAGGAAAGTGATTGACCATATAAGAAAGTGGCGCATTAGTAGCGCCAGTTTGAAGCAGTAATTTATAAGGGAAGCTGGAGTCAGGCATCACGCCAACGGcac < 2:657501/140‑1 (MQ=255)
aTGTACGGAGATAGTGACCACACAAAACGTATTCTTTAAGGAAAGTGATTGACCATATAAGAAAGTGGCGCATTAGTAGCGCCAGTTTGAAGCAGTAATTTATAAGGGAAGCTGGAGTCAGGCATCACGCCAACGGcaca < 2:455922/140‑1 (MQ=255)
tGTACGGAGATAGTGACCACACAAAACGTATTCTTTAAGGAAAGTGATTGACCATATAAGAAAGTGGCGCATTAGTAGCGCCAGTTTGAAGCAGTAATTTATAAGGGAAGCTGGAGTCAGGCATCACGCCAACGGCACAt > 2:702105/1‑140 (MQ=255)
gTACGGAGATAGTGACCACACAAAACGTATTCTTTAAGGAAAGTGATTGACCATATAAGAAAGTGGCGCATTAGTAGCGCCAGTTTGAAGCAGTAATTTATAAGGGAAGCTGGAGTCAGGCATCACGCCAACGGCACATa > 2:239994/1‑140 (MQ=255)
gTACGGAGATAGTGACCACACAAAACGTATTCTTTAAGGAAAGTGATTGACCATATAAGAAAGTGGCGCATTAGTAGCGCCAGTTTGAAGCAGTAATTTATAAGGGAAGCTGGAGTCAGGCATCACGCCAACGGCACATa < 2:721782/140‑1 (MQ=255)
aCGGAGATAGTGACCACACAAAACGTATTCTTTAAGGAAAGTGATTGACCATATAAGAAAGTGGCGCATTAGTAGCGCCAGTTTGAAGCAGTAATTTATAAGGGAAGCTGGAGTCAGGCATCACGCCAACGGCACATaaa > 2:803392/1‑140 (MQ=255)
agaTAGTGACCACACAAAACGTATTCTTTAAGGAAAGTGATTGACCATATAAGAAAGTGGCGCATTAGTAGCGCCAGTTTGAAGCAGTAATTTATAAGGGAAGCTGGAGTCAGGCATCACGCCAACGGCACATAAACATc < 2:465996/140‑1 (MQ=255)
aTAGTGACCACACAAAACGTATTCTTTAAGGAAAGTGATTGACCATATAAGAAAGTGGCGCATTAGTAGCGCCAGTTTGAAGCAGTAATTTATAAGGGAAGCTGGAGTCAGGCATCACGCCAACGGCACATAAACATCCg > 2:847516/1‑140 (MQ=255)
tGACCACACAAAACGTATTCTTTAAGGAAAGTGATTGACCATATAAGAAAGTGGCGCATTAGTAGCGCCAGTTTGAAGCAGTAATTTATAAGGGAAGCTGGAGTCAGGCATCACGCCAACGGCACATAAACATCCGTTTc < 1:634941/140‑1 (MQ=255)
tGACCACACAAAACGTATTCTTTAAGGAAAGTGATTGACCATATAAGAAAGTGGCGCATTAGTAGCGCCAGTTTGAAGCAGTAATTTATAAGGGAAGCTGGAGTCAGGCATCACGCCAACGGCACATAAACATCCGTTTc > 1:439941/1‑140 (MQ=255)
cacacaAAACGTATTCTTTAAGGAAAGTGATTGACCATATAAGAAAGTGGCGCATTAGTAGCGCCAGTTTGAAGCAGTAATTTATAAGGGAAGCTGGAGTCAGGCATCACGCCAACGGCACATAAACATCCGTTTCCAGt > 2:801893/1‑140 (MQ=255)
cacacaAAACGTATTCTTTAAGGAAAGTGATTGACCATATAAGAAAGTGGCGCATTAGTAGCGCCAGTTTGAAGCAGTAATTTATAAGGGAAGCTGGAGTCAGGCATCACGCCAACGGCACATAAACATCCGTTTCCAGt > 2:331929/1‑140 (MQ=255)
cacaAAACGTATTCTTTAAGGAAAGTGATTGACCATATAAGAAAGTGGCGCATTAGTAGCGCCAGTTTGAAGCAGTAATTTATAAGGGAAGCTGGAGTCAGGCATCACGCCAACGGCACATAAACATCCGTTTCCAGTCg > 1:648850/1‑140 (MQ=255)
acaAAACGTATTCTTTAAGGAAAGTGATTGACCATATAAGAAAGTGGCGCATTAGTAGCGCCAGTTTGAAGCAGTAATTTATAAGGGAAGCTGGAGTCAGGCATCACGCCAACGGCACATAAACATCCGTTTCCAGTCgc < 2:395902/140‑1 (MQ=255)
aTTCTTTAAGGAAAGTGATTGACCATATAAGAAAGTGGCGCATTAGTAGCGCCAGTTTGAAGCAGTAATTTATAAGGGAAGCTGGAGTCAGGCATCACGCCAACGGCACATAAACATCCGTTTCCAGt > 1:725715/1‑128 (MQ=255)
aTTCTTTAAGGAAAGTGATTGACCATATAAGAAAGTGGCGCATTAGTAGCGCCAGTTTGAAGCAGTAATTTATAAGGGAAGCTGGAGTCAGGCATCACGCCAACGGCACATAAACATCCGTTTCCAGt < 2:725715/128‑1 (MQ=255)
ttCTTTAAGGAAAGTGATTGACCATATAAGAAAGTGGCGCATTAGTAGCGCCAGTTTGAAGCAGTAATTTATAAGGGAAGCTGGAGTCAGGCATCACGCCAACGGCACATAAACATCCGTTTCCAGTCgc < 1:295984/130‑1 (MQ=255)
ttCTTTAAGGAAAGTGATTGACCATATAAGAAAGTGGCGCATTAGTAGCGCCAGTTTGAAGCAGTAATTTATAAGGGAAGCTGGAGTCAGGCATCACGCCAACGGCACATAAACATCCGTTTCCAGTCgc > 2:295984/1‑130 (MQ=255)
ttCTTTAAGGAAAGTGATTGACCATATAAGAAAGTGGCGCATTAGTAGCGCCAGTTTGAAGCAGTAATTTATAAGGGAAGCTGGAGTCAGGCATCACGCCAACGGCACATAAACATCCGTTTCCAGTCGCTGCTCTGTCa < 1:16428/140‑1 (MQ=255)
ttCTTTAAGGAAAGTGATTGACCATATAAGAAAGTGGCGCATTAGTAGCGCCAGTTTGAAGCAGTAATTTATAAGGGAAGCTGGAGTCAGGCATCACGCCAACGGCACATAAACATCCGTTTCCAGTCGCTGCTCTGTCa > 2:231893/1‑140 (MQ=255)
aGGAAAGTGATTGACCATATAAGAAAGTGGCGCATTAGTAGCGCCAGTTTGAAGCAGTAATTTATAAGGGAAGCTGGAGTCAGGCATCACGCCAACGGCACATAAACATCCGTTTCCAGTCGCTGCTCTGTCACCCCTTc > 2:631594/1‑140 (MQ=255)
gAAAGTGATTGACCATATAAGAAAGTGGCGCATTAGTAGCGCCAGTTTGAAGCAGTAATTTATAAGGGAAGCTGGAGTCAGGCATCACGCCAACGGCACATAAACATCCGTTTCCAGTCGCTGCTCTGTCACCCCTTCgg < 1:331929/140‑1 (MQ=255)
gTGATTGACCATATAAGGAAGTGGCGCATTAGTAGCGCCAGTTTGAAGCAGTAATTTATAAGGGAAGCTGGAGTCAGGCATCACGCCAACGGCACATAAACATCCGTTTCCAGTCGCTGCTCTGTCACCCCTTCGGCAAg > 2:877551/1‑140 (MQ=255)
tGATTGACCATATAAGAAAGTGGCGCATTAGTAGCGCCAGTTTGAAGCAGTAATTTATAAGGGAAGCTGGAGTCAGGCATCACGCCAACGGCACATAAACATCCGTTTCCAGTCGCTGCTCTGTCACCCCTTCGGCAAGa < 1:711063/140‑1 (MQ=255)
tGATTGACCATATAAGAAAGTGGCGCATTAGTAGCGCCAGTTTGAAGCAGTAATTTATAAGGGAAGCTGGAGTCAGGCATCACGCCAACGGCACATAAACATCCGTTTCCAGTCGCTGCTCTGTCACCCCTTCGGCAAGa < 1:631594/140‑1 (MQ=255)
aCCATATAAGAAAGTGGCGCATTAGTAGCGCCAGTTTGAAGCAGTAATTTATAAGGGAAGCTGGAGTCAGGCATCACGCCAACGGCACATAAACATCCGTTTCCAGTCGCTGCTCTGTCACCCCTTCGGCAAGATTGgtg < 2:798070/140‑1 (MQ=255)
cATATAAGAAAGTGGCGCATTAGTAGCGCCAGTTTGAAGCAGTAATTTATAAGGGAAGCTGGAGTCAGGCATCACGCCAACGGCACATAAACATCCGTTTCCAGTCGCTGCTCTGTCACCCCTTCGGCAAGATTGGTGTa > 1:340681/1‑140 (MQ=255)
atatAAGAAAGTGGCGCATTAGTAGCGCCAGTTTGAAGCAGTAATTTATAAGGGAAGCTGGAGTCAGGCATCACGCCAACGGCACATAAACATCCGTTTCCAGTCGCTGCTCTGTCCCCCCTTCGGCAAGATTGGTGTAg < 1:515611/140‑1 (MQ=255)
tataAGAAAGTGGCGCATTAGTAGCGCCAGTTTGAAGCAGTAATTTATAAGGGAAGCTGGAGTCAGGCATCACGCCAACGGCACATAAACATCCGTTTCCAGTCGCTGCTCTGTCACCCCTTCGGCAAGATTGGTGTAGt > 1:61996/1‑140 (MQ=255)
aGTGGCGCATTAGTAGCGCCAGTTTGAAGCAGTAATTTATAAGGGAAGCTGGAGTCAGGCATCACGCCAACGGCACATAAACATCCGTTTCCAGTCGCTGCTCTGTCACCCCTTCGGCAAGATTGGTGTAGTGAAACAGa > 1:96961/1‑140 (MQ=255)
tGGCGCATTAGTAGCGCCAGTTTGAAGCAGTAATTTATAAGGGAAGCTGGAGTCAGGCATCACGCCAACGGCACATAAACATCCGTTTCCAGTCGCTGCTCTGTCACCCCTTCGGCAAGATTGGTGTAGTGAAACAGAAt > 1:798668/1‑140 (MQ=255)
tGGCGCATTAGTAGCGCCAGTTTGAAGCAGTAATTTATAAGGGAAGCTGGAGTCAGGCATCACGCCAACGGCACATAAACATCCGTTTCCAGTCGCTGCTCTGTCACCCCTTCGGCAAGATTGGTGTAGTGAAACAGAAt > 2:85651/1‑140 (MQ=255)
ggCGCATTAGTAGCGCCAGTTTGAAGCAGTAATTTATAAGGGAAGCTGGAGTCAGGCATCACGCCAACGGCACATAAACATCCGTTTCCAGTCGCTGCTCTGTCACCCCTTCGGCAAGATTGGTGTAGTGAAACAGAATc > 1:698012/1‑140 (MQ=255)
gcgcATTAGTAGCGCCAGTTTGAAGCAGGAATTTATAAGGGAAGCTGGAGTCAGGCATCACGCCAACGGCACATAAACATCCGTTTCCAGTCGCTGCTCTGTCACCCCTTCGGCAAGATTGGTGTAGTGAAACAGAATCg > 1:90402/1‑140 (MQ=255)
cgcATTAGTAGCGCCAGTTTGAATCAGTAATTTATAAGGGAAGCTGGAGTCAGGCATCACGCCAACGGCACATAAACATCCGTTTCCAGTCGCTGCTCTGTCACCCCTTCGGCAAGATTGGTGTAGTGAAACAGAATCgg > 1:841225/1‑140 (MQ=255)
gtagCGCCAGTTTGAAGCAGTAATTTATAAGGGAAGCTGGAGTCAGGCATCACGCCAACGGCACATAAACATCCGTTTCCAGTCGCTGCTCTGTCACCCCTTCGGCAAGATTGGTGTAGTGAAACAGAATCGGTGCTTTa < 1:85651/140‑1 (MQ=255)
cgcCAGTTTGAAGCAGTAATTTATAAGGGAAGCTGGAGTCAGGCATCACGCCAACGGCACATAAACATCCGTTTCCAGTCGCTGCTCTGTCACCCCTTCGGCAAGATTGGTGTAGTGAAACAGAATCGGTGCTTTACGCa > 2:874053/1‑140 (MQ=255)
gTTTGAAGCAGTAATTTATAAGGGAAGCTGGAGTCAGGCATCACGCCAACGGCACATAAACATCCGTTTCCAGTCGCTGCTCTGTCACCCCTTCGGCAAGATTGGTGTAGTGAAACAGAATCGGTGCTTTACGCATTTtc > 2:795825/1‑140 (MQ=255)
tttGAAGCAGTAATTTATAAGGGAAGCTGGAGTCAGGCATCACGCCAACGGCACATAAACATCCGTTTCCAGTCGCTGCTCTGTCACCCCTTCGGCAAGATTGGTGTAGTGAAACAGAATCGGTGCTTTACGCATTTtct > 1:618090/1‑140 (MQ=255)
tGAAGCAGTAATTTATAAGGGAAGCTGGAGTCAGGCATCACGCCAACGGCACATAAACATCCGTTTCCAGTCGCTGCTCTGTCACCCCTTCGGCAAGATTGGTGTAGTGAAACAGAATCGGTGCTTTACGCATTTTCTcg < 1:795825/140‑1 (MQ=255)
aaGCAGTAATTTATAAGGGAAGCTGGAGTCAGGCATCACGCCATCGGCACATAAACATCCGTTTCCAGTCGCTGCTCTGTCACCCCTTCGGCAAGATTGGTGTAGTGAAACAGAATCGGTGCTTTACGCATTTTCTcgcc > 2:261336/1‑140 (MQ=255)
|
AATTACAGCAATGAAAAAGCACCTAAAAGGTTAGTTAGATGTACGGAGATAGTGACCACACAAAACGTATTCTTTAAGGAAAGTGATTGACCATATAAGAAAGTGGCGCATTAGTAGCGCCAGTTTGAAGCAGGAATTTATAAGGGAAGCTGGAGTCAGGCATCACGCCAACGGCACATAAACATCCGTTTCCAGTCGCTGCTCTGTCACCCCTTCGGCAAGATTGGTGTAGTGAAACAGAATCGGTGCTTTACGCATTTTCTCGCC > NC_000913/3168587‑3168853
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
