Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A13 F73 I1 R1 29 168.5 5953234 99.3% 5911561 139.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,963,423 C→A L269L (CTG→CTT)  gpp ← guanosine‑5'‑triphosphate,3'‑diphosphate phosphatase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,963,4230CA100.0% 533.3 / NA 148L269L (CTG→CTT) gppguanosine‑5'‑triphosphate,3'‑diphosphate phosphatase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (81/67);  total (81/67)

Only 100 of 149 total aligned reads displayed.

TACGCAGCGTACGGCTGCGAATATCCTGCTCGACGGCCAGATGCAACATGCCGTAGACCAGGCCTTCACGCAGCGCACCGCCCGCCAGGGTCATACACTGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCCAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCAATCTCCAGTTCCTCCAGCCGACCGCAATGAATGGCTCGCTGTTTCAATTGCTGCAACTTTTCCAGGGTAATGCGTTCATCCATCCCCTGT  >  NC_000913/3963287‑3963558
                                                                                                                                        |                                                                                                                                       
tACGCAGCGTACGGCTGCGAATATCCTGCTCGACGGCCAGATGCAACATGCCGTAGACCAGGCCTTCACGCAGCGCACCGCCCGCCAGGGTCATACACTGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGa                                                                                                                                      >  2:193958/1‑140 (MQ=255)
tACGCAGCGTACGGCTGCGAATATCCTGCTCGACGGCCAGATGCAACATGCCGTAGACCAGGCCTTCACGCAGCGCACCGCCCGCCAGGGTCATACACTGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGa                                                                                                                                      >  2:2382448/1‑140 (MQ=255)
tACGCAGCGTACGGCTGCGAATATCCTGCTCGACGGCCAGATGCAACATGCCGTAGACCAGGCCTTCACGCAGCGCACCGCCCGCCAGGGTCATACACTGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGa                                                                                                                                      >  2:2511794/1‑140 (MQ=255)
 aCGCAGCGTACGGCTGCGAATATCCTGCTCGACGGCCAGATGCAACATGCCGTAGACCAGGCCTTCACGCAGCGCACCGCCCGCCAGGGTCATACACTGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGAc                                                                                                                                     <  1:1218006/140‑1 (MQ=255)
  cGCAGCGTACGGCTGCGAATATCCTGCTCGACGGCCAGATGCAACATGCCGTAGACCAGGCCTTCACGCAGCGCACCGCCCGCCAGGGTCATACACTGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGAcc                                                                                                                                    >  1:781196/1‑140 (MQ=255)
  cGCAGCGTACGGCTGCGAATATCCTGCTCGACGGCCAGATGCAACATGCCGTAGACCAGGCCTTCACGCAGCGCACCGCCCGCCAGGGTCATACACTGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGAcc                                                                                                                                    >  1:2528263/1‑140 (MQ=255)
     aGCGTACGGCTGCGAATATCCTGCTCGACGGCCAGATGCAACATGCCGTAGACCAGGCCTTCACGCAGCGCACCGCCCGCCAGGGTCATACACTGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACt                                                                                                                                 >  1:1003156/1‑140 (MQ=255)
     aGCGTACGGCTGCGAATATCCTGCTCGACGGCCAGATGCAACATGCCGTAGACCAGGCCTTCACGCAGCGCACCGCCCGCCAGGGTCATACACTGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACt                                                                                                                                 >  1:73731/1‑140 (MQ=255)
      gCGTACGGCTGCGAATATCCTGCTCGACGGCCAGATGCAACATGCCGTAGACCAGGCCTTCACGCAGCGCACCGCCCGCCAGGGTCATACACTGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTc                                                                                                                                >  2:2515398/1‑140 (MQ=255)
       cGTACGGCTGCGAATATCCTGCTCGACGGCCAGATGCAACATGCCGTAGACCAGGCCTTCACGCAGCGCACCGCCCGCCAGGGTCATACACTGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCg                                                                                                                               >  1:626600/1‑140 (MQ=255)
         tACGGCTGCGAATATCCTGCTCGACGGCCAGATGCAACATGCCGTAGACCAGGCCTTCACGCAGCGCACCGCCCGCCAGGGTCATACACTGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCggg                                                                                                                             <  2:912648/140‑1 (MQ=255)
         tACGGCTGCGAATATCCTGCTCGACGGCCAGATGCAACATGCCGTAGACCAGGCCTTCACGCAGCGCACCGCCCGCCAGGGTCATACACTGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCggg                                                                                                                             >  1:2752496/1‑140 (MQ=255)
           cGGCTGCGAATATCCTGCTCGACGGCCAGATGCAACATGCCGTAGACCAGGCCTTCACGCAGCGCACCGCCCGCCAGGGTCATACACTGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGaa                                                                                                                           <  2:1003156/140‑1 (MQ=255)
           cGGCTGCGAATATCCTGCTCGACGGCCAGATGCAACATGCCGTAGACCAGGCCTTCACGCAGCGCACCGCCCGCCAGGGTCATACACTGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGaa                                                                                                                           <  2:1666468/140‑1 (MQ=255)
            ggCTGCGAATATCCTGCTCGACGGCCAGATGCAACATGCCGTAGACCAGGCCTTCACGCAGCGCACCGCCCGCCAGGGTCATACACTGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAac                                                                                                                          <  1:1252287/140‑1 (MQ=255)
                gCGAATATCCTGCTCGACGGCCAGATGCAACATGCCGTAGACCAGGCCTTCACGCAGCGCACCGCCCGCCAGGGTCATACACTGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTa                                                                                                                      <  1:177249/140‑1 (MQ=255)
                 cGAATATCCTGCTCGACGGCCAGATGCAACATGCCGTAGACCAGGCCTTCACGCAGCGCACCGCCCGCCAGGGTCATACACTGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTaa                                                                                                                     >  2:496289/1‑140 (MQ=255)
                 cGAATATCCTGCTCGACGGCCAGATGCAACATGCCGTAGACCAGGCCTTCACGCAGCGCACCGCCCGCCAGGGTCATACACTGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTaa                                                                                                                     >  2:1415639/1‑140 (MQ=255)
                 cGAATATCCTGCTCGACGGCCAGATGCAACATGCCGTAGACCAGGCCTTCACGCAGCGCACCGCCCGCCAGGGTCATACACTGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTaa                                                                                                                     >  2:1078037/1‑140 (MQ=255)
                     tatCCTGCTCGACGGCCAGATGCAACATGCCGTAGACCAGGCCTTCACGCAGCGCACCGCCCGCCAGGGTCATACACTGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCa                                                                                                                 <  2:2275580/140‑1 (MQ=255)
                          tGCTCGACGGCCAGATGCAACATGCCGTAGACCAGGCCTTCACGCAGCGCACCGCCCGCCAGGGTCATACACTGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTc                                                                                                            <  2:2528263/140‑1 (MQ=255)
                          tGCTCGACGGCCAGATGCAACATGCCGTAGACCAGGCCTTCACGCAGCGCACCGCCCGCCAGGGTCATACACTGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTc                                                                                                            <  2:2261962/140‑1 (MQ=255)
                          tGCTCGACGGCCAGATGCAACATGCCGTAGACCAGGCCTTCACGCAGCGCACCGCCCGCCAGGGTCATACACTGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTc                                                                                                            <  2:1598645/140‑1 (MQ=255)
                                aCGGCCAGATGCAACATGCCGTAGACCAGGCCTTCACGCAGCGCACCGCCCGCCAGGGTCATACACTGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGt                                                                                                      <  1:1365000/140‑1 (MQ=255)
                                 cGGCCAGATGCAACATGCCGTAGACCAGGCCTTCACGCAGCGCACCGCCCGCCAGGGTCATACACTGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTa                                                                                                                      >  2:570859/1‑123 (MQ=255)
                                 cGGCCAGATGCAACATGCCGTAGACCAGGCCTTCACGCAGCGCACCGCCCGCCAGGGTCATACACTGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTa                                                                                                                      <  1:570859/123‑1 (MQ=255)
                                 cGGCCAGATGCAACATGCCGTAGACCAGGCCTTCACGCAGCGCACCGCCCGCCAGGGTCATACACTGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTc                                                                                                     >  1:651082/1‑140 (MQ=255)
                                   gCCAGATGCAACATGCCGTAGACCAGGCCTTCACGCAGCGCACCGCCCGCCAGGGTCATACACTGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAg                                                                                                   <  1:1041040/140‑1 (MQ=255)
                                       gATGCAACATGCCGTAGACCAGGCCTTCACGCAGCGCACCGCCCGCCAGGGTCATACACTGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCg                                                                                               <  1:193958/140‑1 (MQ=255)
                                        aTGCAACATGCCGTAGACCAGGCCTTCACGCAGCGCACCGCCCGCCAGGGTCATACACTGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGt                                                                                              <  2:2794631/140‑1 (MQ=255)
                                        aTGCAACATGCCGTAGACCAGGCCTTCACGCAGCGCACCGCCCGCCAGGGTCATACACTGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGt                                                                                              >  1:1386430/1‑140 (MQ=255)
                                          gCAACATGCCGTAGACCAGGCCTTCACGCAGCGCACCGCCCGCCAGGGTCATACACTGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCa                                                                                            <  1:1726522/140‑1 (MQ=255)
                                           cAACATGCCGTAGACCAGGCCTTCACGCAGCGCACCGCCCGCCAGGGTCATACACTGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCaa                                                                                           <  1:1078037/140‑1 (MQ=255)
                                              cATGCCGTAGACCAGGCCTTCACGCAGCGCACCGCCCGCCAGGGTCATACACTGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCAAtct                                                                                        >  2:1060552/1‑140 (MQ=255)
                                              cATGCCGTAGACCAGGCCTTCACGCAGCGCACCGCCCGCCAGGGTCATACACTGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCAAtct                                                                                        >  2:2217841/1‑140 (MQ=255)
                                              cATGCCGTAGACCAGGCCTTCACGCAGCGCACCGCCCGCCAGGGTCATACACTGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCAAtc                                                                                         >  2:2825731/1‑139 (MQ=255)
                                                  ccGTAGACCAGGCCTTCACGCAGCGCACCGCCCGCCAGGGTCATACACTGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCAATCTCCa                                                                                     >  1:744730/1‑139 (MQ=255)
                                                  ccGTAGACCAGGCCTTCACGCAGCGCACCGCCCGCCAGGGTCATACACTGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCAATCTCCAg                                                                                    >  1:2327445/1‑140 (MQ=255)
                                                      aGACCAGGCCTTCACGCAGCGCACCGCCCGCCAGGGTCATACACTGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCAATCTCCAGTtcc                                                                                <  1:32411/140‑1 (MQ=255)
                                                         ccAGGCCTTCACGCAGCGCACCGCCCGCCAGGGTCATACACTGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCAATCTCCAGTtcctcc                                                                             >  1:884948/1‑140 (MQ=255)
                                                            ggCCTTCACGCAGCGCACCGCCCGCCAGGGTCATACACTGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCAATCTCCAGTTCCTCCAGc                                                                          >  1:303598/1‑140 (MQ=255)
                                                             gCCTTCACGCAGCGCACCGCCCGCCAGGGTCATACACTGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCaa                                                                                           >  1:167402/1‑122 (MQ=255)
                                                             gCCTTCACGCAGCGCACCGCCCGCCAGGGTCATACACTGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCaa                                                                                           <  2:167402/122‑1 (MQ=255)
                                                             gCCTTCACGCAGCGCACCGCCCGCCAGGGTCATACACTGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCAATCTCCAGTTCCTCCAGcc                                                                         >  1:533204/1‑140 (MQ=255)
                                                             gCCTTCACGCAGCGCACCGCCCGCCAGGGTCATACACTGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCAATCTCCAGTTCCTCCAGcc                                                                         >  2:249219/1‑140 (MQ=255)
                                                             gCCTTCACGCAGCGCACCGCCCGCCAGGGTCATACACTGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCAATCTCCAGTTCCTCCAGcc                                                                         >  1:840373/1‑140 (MQ=255)
                                                               cTTCACGCAGCGCACCGCCCGCCAGGGTCATACACTGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCAATCTCCAGTTCCTCCAGCCGa                                                                       <  1:249219/140‑1 (MQ=255)
                                                                ttCACGCAGCGCACCGCCCGCCAGGGTCATACACTGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCAATCTCCAGTTCCTCCAGCCGAc                                                                      <  1:1048769/140‑1 (MQ=255)
                                                                  cACGCAGCGCACCGCCCGCCAGGGTCATACACTGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCAATCTCCa                                                                                     >  2:777459/1‑123 (MQ=255)
                                                                  cACGCAGCGCACCGCCCGCCAGGGTCATACACTGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCAATCTCCAGTTCCTCCAGCCGACCg                                                                    <  1:2859423/140‑1 (MQ=255)
                                                                  cACGCAGCGCACCGCCCGCCAGGGTCATACACTGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCAATCTCCAGTTCCTCCAGCCGACCg                                                                    <  1:1492874/140‑1 (MQ=255)
                                                                  cACGCAGCGCACCGCCCGCCAGGGTCATACACTGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCAATCTCCAGTTCCTCCAGCCGACCg                                                                    <  1:2046036/140‑1 (MQ=255)
                                                                       aGCGCACCGCCCGCCAGGGTCATACACTGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCAATCTCCAGTTCCTCCAGCCg                                                                        <  2:682917/131‑1 (MQ=255)
                                                                       aGCGCACCGCCCGCCAGGGTCATACACTGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCAATCTCCAGTTCCTCCAGCCGACCGCaatg                                                               >  1:2788075/1‑140 (MQ=255)
                                                                         cgcACCGCCCGCCAGGGTCATACACTGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCAATCTCCAGTTCCTCCAGCCGACCGCaatgaa                                                             >  1:990280/1‑140 (MQ=255)
                                                                              cgcccgccAGGGTCATACACTGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCAATCTCCAGTTCCTCCAGCCGACCGCAATGAATGGCt                                                        <  1:1715499/140‑1 (MQ=255)
                                                                               gcccgccAGGGTCATACACTGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGTAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCAATCTCCAGTTCCTCCAGCCGACCGCAATGAATGGCTc                                                       <  1:2236808/140‑1 (MQ=255)
                                                                               gcccgccAGGGTCATACACTGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCAATCTCCAGTTCCTCCAGCCGACCGCAATGAATGGCTc                                                       >  1:1105572/1‑140 (MQ=255)
                                                                               gcccgccAGGGTCATACACTGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCAATCTCCAGTTCCTCCAGCCGACCGCAATGAATGGCTc                                                       <  1:88888/140‑1 (MQ=255)
                                                                               gcccgccAGGGTCATACACTGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCAATCTCCAGTTCCTCCAGCCGACCGCAATGAATGGCTc                                                       <  1:2382448/140‑1 (MQ=255)
                                                                                cccgccAGGGTCATACACTGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCAATCTCCAGTTCCTCCAGCCGACCGCAATGAATGGCTCg                                                      <  2:1320422/140‑1 (MQ=255)
                                                                                   gccAGGGTCATACACTGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCAATCTCCAGTTCCTCCAGCCGACCGCAATGAATGGCTCGCTg                                                   >  1:567651/1‑140 (MQ=255)
                                                                                             tACACTGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCAATCTCCAGTTCCTCCAGCCGACCGCAATGAATGGCTCGCTGTTTCAATtgc                                         >  1:2845316/1‑140 (MQ=255)
                                                                                               cacTGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCAATCTCCAGTTCCTCCAGCCGACCGCAATGAATGGCTCGCTGTTTCAATtgctg                                       >  2:2102887/1‑140 (MQ=255)
                                                                                                  tGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCAATCTCCAGTTCCTCCAGCCGACCGCAATGAATGGCTCGCTGTTTCAATTGCTGCaa                                    >  2:1099116/1‑140 (MQ=255)
                                                                                                  tGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCAATCTCCAGTTCCTCCAGCCGACCGCAATGAATGGCTCGCTGTTTCAATTGCTGCaa                                    >  1:1753374/1‑140 (MQ=255)
                                                                                                  tGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCAATCTCCAGTTCCTCCAGCCGACCGCAATGAATGGCTCGCTGTTTCAATTGCTGCaa                                    <  2:761774/140‑1 (MQ=255)
                                                                                                   gAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCAATCTCCAGTTCCTCCAGCCGACCGCAATGAATGGCTCGCTGTTTCAATTGCTGCAAc                                   <  2:884948/140‑1 (MQ=255)
                                                                                                   gAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCAAACTCCAGTTCCTCCAGCCGACCGCAATGAATGGCTCGCTGTTTCAATTGCTGCAAc                                   <  2:2653690/140‑1 (MQ=255)
                                                                                                    aaTATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCAATCTCCAGTTCCTCCAGCCGACCGCAATGAATGGCTCGCTGTTTCAATTGCTGCAACt                                  >  1:423154/1‑140 (MQ=255)
                                                                                                    aaTATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCAATCTCCAGTTCCTCCAGCCGACCGCAATGAATGGCTCGCTGTTTCAATTGCTGCAACt                                  >  1:521189/1‑140 (MQ=255)
                                                                                                    aaTATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCAATCTCCAGTTCCTCCAGCCGACCGCAATGAATGGCTCGCTGTTTCAATTGCTGCAACt                                  >  1:2008034/1‑140 (MQ=255)
                                                                                                    aaTATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCAATCTCCAGTTCCTCCAGCCGACCGCAATGAATGGCTCGCTGTTTCAATTGCTGCAACt                                  >  2:2732320/1‑140 (MQ=255)
                                                                                                    aaTATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCAATCTCCAGTTCCTCCAGCCGACCGCAATGAATGGCTCGCTGTTTCAATTGCTGCAACt                                  <  2:651082/140‑1 (MQ=255)
                                                                                                    aaTATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCAATCTCCAGTTCCTCCAGCCGACCGCAATGAATGGCTCGCTGTTTCAATTGCTGCAACt                                  >  1:2495986/1‑140 (MQ=255)
                                                                                                    aaTATTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCAATCTCCAGTTCCTCCAGCCGACAGCAATGAATGGCTCGCTGTTTCAATTGCTGCAACt                                  >  1:2776473/1‑140 (MQ=255)
                                                                                                      tatTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCAATCTCCAGTTCCTCCAGCCGACCGCAATGAATGGCTCGCTGTTTCAATTGCTGCAACttt                                >  1:1758037/1‑140 (MQ=255)
                                                                                                      tatTCAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCAATCTCCAGTTCCTCCAGCCGACCGCAATGAATGGCTCGCTGTTTCAATTGCTGCAACttt                                >  1:758752/1‑140 (MQ=255)
                                                                                                          cAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCAATCTCCAGTTCCTCCAGCCGACCGCAATGAATGGCTCGCTGTTTCAATTGCTGCAACTTTTCCa                            <  1:2007633/140‑1 (MQ=255)
                                                                                                          cAGTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCAATCTCCAGTTCCTCCAGCCGACCGCAATGAATGGCTCGCTGTTTCAATTGCTGCAACTTTTCCa                            <  1:1392959/140‑1 (MQ=255)
                                                                                                            gTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCAATCTCCAGTTCCTCCAGCCGACCGCAATGAATGGCTCGCTGTTTCAATTGCTGCAACTTTTCCAgg                          <  1:2732320/140‑1 (MQ=255)
                                                                                                            gTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCAATCTCCAGTTCCTCCAGCCGACCGCAATGAATGGCTCGCTGTTTCAATTGCTGCAACTTTTCCAgg                          >  1:2469583/1‑140 (MQ=255)
                                                                                                            gTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCAATCTCCAGTTCCTCCAGCCGACCGCAATGAATGGCTCGCTGTTTCAATTGCTACAACTTTTCCAgg                          >  1:1340827/1‑140 (MQ=255)
                                                                                                            gTTCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCAATCTCCAGTTCCTCCAGCCGACAGCAATGAATGGCTCGCTGTTTCAATTGCTGCAACTTTTCCAgg                          <  2:2776473/140‑1 (MQ=255)
                                                                                                              tCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCAATCTCCAGTTCCTCCAGCCGACCGCAATGAATGGCTCGCTGTTTCAATTGCTGCAACTTTTCCAGGGt                        >  2:1978444/1‑140 (MQ=255)
                                                                                                              tCGGTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCAATCTCCAGTTCCTCCAGCCGACCGCAATGAATGGCTCGCTGTTTCAATTGCTGCAACTTTTCCAGGGt                        >  2:2869698/1‑140 (MQ=255)
                                                                                                                ggTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCAATCTCCAGTTCCTCCAGCCGACCGCAATGAATGGCTCGCTGTTTCAATTGCTGCAACTTTTCCAGGGTaa                      >  1:401908/1‑140 (MQ=255)
                                                                                                                ggTAAAAATGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCAATCTCCAGTTCCTCCAGCCGACCGCAATGAATGGCTCGCTGTTTCAATTGCTGCAACTTTTCCAGGGTaa                      >  2:931570/1‑140 (MQ=255)
                                                                                                                    aaaaTGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCAATCTCCAGTTCCTCCAGCCGACCGCAATGAATGGCTCGCTGTTTCAATTGCTGCAACTTTTCCAGGGTAATGCg                  <  2:2477549/140‑1 (MQ=255)
                                                                                                                    aaaaTGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCAATCTCCAGTTCCTCCAGCCGACCGCAATGAATGGCTCGCTGTTTCAATTGCTGCAACTTTTCCAGGGTAATGCg                  <  1:2165934/140‑1 (MQ=255)
                                                                                                                      aaTGGCGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCAATCTCCAGTTCCTCCAGCCGACCGCAATGAATGGCTCGCTGTTTCAATTGCTGCAACTTTTCCAGGGTAATGCGtt                <  2:2341115/140‑1 (MQ=255)
                                                                                                                           cGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGGCCGTCAATCTCCAGTTCCTCCAGCCGACCGCAATGGATGGCTCGCTGTTTCAATTGCTGCAACTTTTGCAGGGTAATGCGTTcatcc           <  2:2220832/140‑1 (MQ=255)
                                                                                                                           cGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCAATCTCCAGTTCCTCCAGCCGACCGCAATGAATGGCTCGCTGTTTCAATTGCTGCAACTTTTCCAGGGTa                       <  1:2044309/128‑1 (MQ=255)
                                                                                                                           cGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCAATCTCCAGTTCCTCCAGCCGACCGCAATGAATGGCTCGCTGTTTCAATTGCTGCAACTTTTCCAGGGTa                       >  2:2044309/1‑128 (MQ=255)
                                                                                                                           cGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCAATCTCCAGTTCCTCCAGCCGACCGCAATGAATGGCTCGCTGTTTCAATTGCTGCAACTTTTCCAGGGTAATGCGTTcatcc           <  2:2752496/140‑1 (MQ=255)
                                                                                                                           cGATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCAATCTCCAGTTCCTCCAGCCGACCGCAATGAATGGCTCGCTGTTTCAATTGCTGCAACTTTTCCAGGGTAATGCGTTcatcc           <  2:1060224/140‑1 (MQ=255)
                                                                                                                            gATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCAATCTCCAGTTCCTCCAGCCGACCGCAATGAATGGCTCGCTGTTTCAATTGCTGCAACTTTTCCAGGGTAATGCGTTcatcca          <  2:868453/140‑1 (MQ=255)
                                                                                                                            gATCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCAATCTCCAGTTCCTCCAGCCGACCGCAATGAATGGCTCGCTGTTTCAATTGCTGCAACTTTTCCAGGGTAATGCGTTcatcca          <  2:1368581/140‑1 (MQ=255)
                                                                                                                             aTCAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCAATCTCCAGTTCCTCCAGCCGACCGCAATGAATGGCTCGCTGTTTCAATTGCTGCAACTTTTCCAGGGTAATGCGTTcatccat         <  1:2217841/140‑1 (MQ=255)
                                                                                                                               cAGGATCGCAAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCAATCTCCAGTTCCTCCAGCCGACCGCAATGAATGGCTCGCTGTTTCAATTGCTGCAACTTTTCCAGGGTAATGCGTTCatccatcc       >  1:2714960/1‑140 (MQ=255)
                                                                                                                                        |                                                                                                                                       
TACGCAGCGTACGGCTGCGAATATCCTGCTCGACGGCCAGATGCAACATGCCGTAGACCAGGCCTTCACGCAGCGCACCGCCCGCCAGGGTCATACACTGAATATTCAGTTCGGTAAAAATGGCGATCAGGATCGCCAGACCACTCGGGAACACTAACGCACGTTCCAGCGTCAGCCCGTCAATCTCCAGTTCCTCCAGCCGACCGCAATGAATGGCTCGCTGTTTCAATTGCTGCAACTTTTCCAGGGTAATGCGTTCATCCATCCCCTGT  >  NC_000913/3963287‑3963558

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A