Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A13 F73 I1 R1	29	168.5	5953234	99.3%	5911561	139.2

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,091,890	G→T	F159L (TTC→TTA)	frvB ←	putative PTS enzyme IIBC component FrvB

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,091,890	0	G	T	100.0%	197.9 / NA	55	F159L (TTC→TTA)	frvB	putative PTS enzyme IIBC component FrvB
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (41/14); total (41/14)

GCCGGTTTATCGGCAATCGACGAGGCAATATAAGCGCCCATGATGGGGATCATAAAGGTGAAGCCAAGGTAACCGATGGATTCAACTACCCAGGTAAACGACGGCGCGCCTTTCGACATATCGGTATACGGCAAACC‑GAACTGCA‑CCAGCATGTTGGCAAGCGCCACCAGG‑ATACCACCGCCGATGACAAACGGCAGCGCCGCAGAGACGCCCGCCATCAGGTGGCTCATCACGCTACCGCTTTGCACTTCCTGTTTGCCAAGCTTCAC  >  NC_000913/4091753‑4092021

gCCGGTTTATCGGCAATCGACGAGGCAATATAAGCGCCCATGATGGGGATCATAAAGGTGAAGCCAAGGTAACCGATGGATTCAACTACCCAGGTAAACGACGGCGCGCCTTTCGACATATCGGTATACGGCAAACC‑Taa                                                                                                                                     <  2:2577155/140‑1 (MQ=255)

  cGGTTTATCGGCAATCGACGAGGCAATATAAGCGCCCATGATGGGGATCATAAAGGTGAAGCCAAGGTAACCGATGGATTCAACTACCCAGGTAAACGACGGCGCGCCTTTCGACATATCGGTATACGGCAAACC‑TAACt                                                                                                                                   <  2:1291096/140‑1 (MQ=255)

  cGGTTTATCGGCAATCGACGAGGCAATATAAGCGCCCATGATGGGGATCATAAAGGTGAAGCCAAGGTAACCGATGGATTCAACTACCCAGGTAAACGACGGCGCGCCTTTCGACATATCGGTATACGGCAAACC‑TAACt                                                                                                                                   <  1:316982/140‑1 (MQ=255)

     tttATCGGCAATCGACGAGGCAATATAAGCGCCCATGATGGGGATCATAAAGGTGAAGCCAAGGTAACCGATGGATTCAACTACCCAGGTAAACGACGGCGCGCCTTTCGACATATCGGTATACGGCAAACC‑TAACTGCa                                                                                                                                >  1:2254344/1‑140 (MQ=255)

      ttATCGGCAATCGACGAGGCAATATAAGCGCCCATGATGGGGATCATAAAGGTGAAGCCAAGGTAACCGATGGATTCAACTACCCAGGTAAACGACGGCGCGCCTTTCGACATATCGGTATACGGCAAACC‑TAACTGCA‑c                                                                                                                              <  1:1042881/140‑1 (MQ=255)

          cGGCAATCGACGAGGCAATATAAGCGCCCATGATGGGGATCATAAAGGTGAAGCCAAGGTAACCAATGGATTCAACTACCCAGGTAAACGACGGCGCGCCTTTCGACATATCGGTATACGGCAAACC‑TAACTGCA‑CCAGc                                                                                                                          >  1:1777311/1‑140 (MQ=255)

             cAATCGACGAGGCAATATAAGCGCCCATGATGGGGATCATAAAGGTGAAGCCAAGGTAACCGATGGATTCAACTACCCAGGTAAACGACGGCGCGCCTTTCGACATATCGGTATACGGCAAACC‑TAACTGCA‑CCAGCATg                                                                                                                       <  2:473784/140‑1 (MQ=255)

             cAATCGACGAGGCAATATAAGCGCCCATGATGGGGATCATAAAGGTGAAGCCAAGGTAACCGATGGATTCAACTACCCAGGTAAACGACGGCGCGCCTTTCGACATATCGGTATACGGCAAACC‑TAACTGCA‑CCAGCATg                                                                                                                       <  2:2882716/140‑1 (MQ=255)

               aTCGACGAGGCAATATAAGCGCCCATGATGGGGATCATAAAGGTGAAGCCAAGGTAACCGATGGATTCAACTACCCAGGTAAACGACGGCGCGCCTTTCGACATATCGGTATACGGCAAACC‑TAACTGCA‑CCAGCATGtt                                                                                                                     >  1:422510/1‑140 (MQ=255)

                  gacgaGGCAATATAAGCGCCCATGATGGGGATCATAAAGGTGAAGCCAAGGTAACCGATGGATTCAACTACCCAGGTAAACGACGGCGCGCCTTTCGACATATCGGTATACGGCAAACC‑TAACTGCA‑CCAGCATGTTGGc                                                                                                                  <  2:719834/140‑1 (MQ=255)

                   acgaGGCAATATAAGCGCCCATGATGGGGATCATAAAGGTGAAGCCAAGGTAACCGATGGATTCAACTACCCAGGTAAACGACGGCGCGCCTTTCGACATATCGGTATACGGCAAACC‑TAACTGCA‑CCAGCATGTTGGCa                                                                                                                 <  2:2679786/140‑1 (MQ=255)

                      aGGCAATATAAGCGCCCATGATGGGGATCATAAAGGTGAAGCCAAGGTAACCGATGGATTCAACTACCCAGGTAAACGACGGCGCGCCTTTCGACATATCGGTATACGGCAAACC‑TAACTGCA‑CCAGCATGTTGGCAAgc                                                                                                              <  2:1769160/140‑1 (MQ=255)

                      aGGCAATATAAGCGCCCATGATGGGGATCATAAAGGTGAAGCCAAGGTAACCGATGGATTCAACTACCCAGGTAAACGACGGCGCGCCTTTCGACATATCGGTATACGGCAAACC‑TAACTGCA‑CCAGCATGTTGGCAAgc                                                                                                              <  2:2624316/140‑1 (MQ=255)

                        gCAATATAAGCGCCCATGATGGGGATCATAAAGGTGAAGCCAAGGTAACCGATGGATTCAACTACCCAGGTAAACGACGGCGCGCCTTTCGACATATCGGTATACGGCAAACC‑TAACTGCA‑CCAGCATGTTGGCAAgcgc                                                                                                            <  1:1823938/140‑1 (MQ=255)

                           atatAAGCGCCCATGATGGGGATCATAAAGGTGAAGCCAAGGTAACCGATGGATTCAACTACCCAGGTAAACGACGGCGCGCCTTTCGACATATCGGTATACGGCAAACC‑TAACTGCA‑CCAGCATGTTGGCAAGCGccac                                                                                                         <  2:2384670/140‑1 (MQ=255)

                                    cccATGATGGGGATCATAAAGGTGAAGCCAAGGTAACCGATGGATTCAACTACCCAGGTAAACGACGGCGCGCCTTTCGACATATCGGTATACGGCAAACC‑TAACTGCA‑CCAGCATGTTGGCAAGCGCCACCAGG‑ATacc                                                                                               >  1:1940732/1‑140 (MQ=255)

                                    cccATGATGGGGATCATAAAGGTGAAGCCAAGGTAACCGATGGATTCAACTACCCAGGTAAACGACGGCGCGCCTTTCGACATATCGGTATACGGCAAACC‑TAACTGCA‑CCAGCATGTTGGCAAGCGCCACCAGG‑ATacc                                                                                               >  1:2376859/1‑140 (MQ=255)

                                    cccATGAGGGGGATAATAAAGGTGAAGCCAAGGTACCCAATGGATTCAACTACCCAGGTAAACGACGGCGCGCCTTTCGACATATCGGTATACGGCAAACC‑TACCTGCA‑CCAGCATGTTGGCAAGCGCCCCCAGG‑ATccc                                                                                               <  2:1777311/140‑1 (MQ=255)

                                      cATGATGGGGATCATAAAGGTGAAGCCAAGGTAACCGATGGATTCAACTACCCAGGTAAACGACGGCGCGCCTTTCGACATATCGGTATACGGCAAACC‑TAACTGCA‑CCAGCATGTTGGCAAGCGccac                                                                                                         >  1:2369873/1‑129 (MQ=255)

                                      cATGATGGGGATCATAAAGGTGAAGCCAAGGTAACCGATGGATTCAACTACCCAGGTAAACGACGGCGCGCCTTTCGACATATCGGTATACGGCAAACC‑TAACTGCA‑CCAGCATGTTGGCAAGCGccac                                                                                                         <  2:2369873/129‑1 (MQ=255)

                                      cATGATGGGGATCATAAAGGTGAAGCCAAGGTAACCGATGGATTCAACTACCCAGGTAAACGACGGCGCGCCTTTCGACATATCGGTATACGGCAAACC‑TAACTGCA‑CCAGCATGTTGGCAAGCGcc                                                                                                           >  1:1623336/1‑127 (MQ=255)

                                      cATGATGGGGATCATAAAGGTGAAGCCAAGGTAACCGATGGATTCAACTACCCAGGTAAACGACGGCGCGCCTTTCGACATATCGGTATACGGCAAACC‑TAACTGCA‑CCAGCATGTTGGCAAGCGcc                                                                                                           <  2:1623336/127‑1 (MQ=255)

                                      cATGATGGGGATCATAAAGGTGAAGCCAAGGTAACCGATGGATTCAACTACCCAGGTAAACGACGGCGCGCCTTTCGACATATCGGTATACGGCAAACC‑TAACTGCA‑CCAGCATGTTGGCAAGCGCCACCAGG‑ATaccac                                                                                             >  1:1259507/1‑140 (MQ=255)

                                      cATGATGGGGATCATAAAGGTGAAGCCAAGGTAACCGATGGATTCAACTACCCAGGTAAACGACGGCGCGCCTTTCGACATATCGGTATACGGCAAACC‑TAACTGCA‑CCAGCATGTTGGCAAGCGCCACCAGG‑ATaccac                                                                                             >  2:291571/1‑140 (MQ=255)

                                           gggggATAATAAAGGTAAGGCCAAGGTACCCGATGGATTCAACTACCCAGGAAACCGACGGCGCGCCTTTCGACATAGCGGTATACGGCAACCC‑AAACGGCA‑CCAGCATGTGGGCAAGCGCCACAAGG‑ATACCAccgccg                                                                                        <  2:2254344/139‑1 (MQ=255)

                                            ggggATCATAAGGGTGAAGCCAAGGTAACCGATGGATTCAACTCCCCAGGTAACCGACGGCGCGCCTTTCGACATACCGGTATCCGGCAACCC‑TAACTGCA‑CCAGCTTGTTGGCAAGCCCCACCAGG‑ATCCCACCGCCGa                                                                                       <  2:857514/140‑1 (MQ=255)

                                                 tCATAAAGGTGAAGCCAAGGTAACCGATGGATTCAACTACCCAGGTAAACGACGGCGCGCCTTTCGACATATCGGTATACGGCAAACC‑TAACTGCA‑CCAGCATGTTGGCAAGCGCCACCAGG‑ATACCACCGCCGATGACa                                                                                  >  1:2242048/1‑140 (MQ=255)

                                                   aTAAAGGTGAAGCCAAGGTAACCGATGGATTCAACTACCCAGGTAAACGACGGCGCGCCTTTCGACATATCGGTATACGGCAAACC‑TAACTGCA‑CCAGCATGTTGGCAAGCGCCACCAGG‑ATACCACCGCCGATGACaaa                                                                                >  1:1160976/1‑140 (MQ=255)

                                                         gTGAAGCCAAGGTAACCGATGGATTCAACTACCCAGGTAAACGACGGCGCGCCTTTCGACATATCGGTATACGGCAAACC‑TAACTGCA‑CCAGCATGTTGGCAAGCGCCACCAGG‑ATACCACCGCCGATGACAAACGGCAg                                                                          >  2:887616/1‑140 (MQ=255)

                                                            aaGCCAAGGTAACCGATGGATTCAACTACCCAGGTAAACGACGGCGCGCCTTTCGACATATCGGTATACGGCAAACC‑TAACTGCA‑CCAGCATGTTGGCAAGCGCCACCAGG‑ATACCACCGCCGATGACAAACGGCAgcgc                                                                       >  1:2895023/1‑140 (MQ=255)

                                                            aaGCCAAGGTAACCGATGGATTCAACTACCCAGGTAAACGACGGCGCGCCTTTCGACATATCGGTATACGGCAAACC‑TAACTGCA‑CCAGCATGTTGGCAAGCGCCACCAGG‑ATACCACCGCCGATGACAAACGGCAgcgc                                                                       >  1:750860/1‑140 (MQ=255)

                                                            aaGCCAAGGTAACCGATGGATTCAACTACCCAGGTAAACGACGGCGCGCCTTTCGACATATCGGTATACGGCAAACC‑TAACTGCA‑CCAGCATGTTGGCAAGCGCCACCAGG‑ATACCACCGCCGATGACAAACGGCAgcgc                                                                       >  1:1244595/1‑140 (MQ=255)

                                                            aaGCCAAGGTAACCGATGGATTCAACTACCCAGGTAAACGACGGCGCGCCTTTCGACATATCGGTATACGGCAAACC‑TAACTGCA‑CCAGCATGTTGGCAAGCGCCACCAGG‑ATACCACCGCCGATGACAAACGGCAgcgc                                                                       >  2:732245/1‑140 (MQ=255)

                                                            aaGCCAAGGTAACCGATGGATTCAACTACCCAGGTAAACGACGGCGCGCCTTTCGACATATCGGTATACGGCAAACC‑TAACTGCA‑CCAGCATGTTGGCAAGCGCCACCAGG‑ATACCACCGCCGATGACAAACGGCAgcgc                                                                       >  1:64268/1‑140 (MQ=255)

                                                            aaGCCAAGGTAACCGATGGATTCAACTACCCAGGTAAACGACGGCGCGCCTTTCGACATATCGGTATACGGCAAACC‑TAACTGCA‑CCAGCATGTTGGCAAGCGCCACCAGG‑ATACCACCGCCGATGACAAACGGCAgcgc                                                                       >  2:644044/1‑140 (MQ=255)

                                                            aaGCCAAGGTAACCGATGGATTCAACTACCCAGGTAAACGACGGCGCGCCTTTCGACATATCGGTATACGGCAAACC‑TAACTGCA‑CCAGCATGTTGGCAAGCGCCACCAGG‑ATACCACCGCCGATGACAAACGGCAgcgc                                                                       >  2:1931295/1‑140 (MQ=255)

                                                              gCCAAGGTAACCGATGGATTCAACTACCCAGGTAAACGACGGCGCGCCTTTCGACATATCGGTATACGGCAAACC‑TAACTGCA‑CCAGCATGTTGGCAAGCGCCACCAGG‑ATACCACCGCCGATGACAAACGGCAGcgccg                                                                     >  1:2868369/1‑140 (MQ=255)

                                                                        ccGATGGATTCAACTACCCAGGTAAACGACGGCGCGCCTTTCGACATATCGGTATACGGCAAACC‑TAACTGCA‑CCAGCATGTTGGCAAGCGCCACCAGG‑ATACCACCGCCGATGACAAACGGCAGCGCCGCAGAGAcgcc                                                           >  1:330777/1‑140 (MQ=255)

                                                                        cagATGGATTAAACTCCCAAGAAAAACGCGGGCGCCCCTTTCAACATAGGGATATCCGAAAAACC‑AACCTCCC‑CCAGCATGTGGGCAAGCCCCACTAGG‑TTCCCACCGCCGATGACAAACGGCAGCGCCGCAGAGAcgcc                                                           <  2:2376859/138‑1 (MQ=255)

                                                                         cGATGGATTCAACTACCCAGGTAAACGACGGCGCGCCTTTCGACATATCGGTATACGGCAAACC‑TAACTGCA‑CCAGCATGTTGGCAAGCGCCACCAGG‑ATACCACCGCCGATGACAAACGGCAGCGCCGCAGAGAcgccc                                                          >  2:311721/1‑140 (MQ=255)

                                                                         cGATGGATTCAACTACCCAGGTAAACGACGGCGCGCCTTTCGACATATCGGTATACGGCAAACC‑TAACTGCA‑CCAGCATGTTGGCAAGCGCCACCAGG‑ATACCACCGCCGATGACAAACGGCAGCGCCGCAGAGAcgccc                                                          >  2:306465/1‑140 (MQ=255)

                                                                         cGATGGATTCAACTACCCAGGTAAACGACGGCGCGCCTTTCGACATATCGGTATACGGCAAACC‑TAACTGCA‑CCAGCATGTTGGCAAGCGCCACCAGG‑ATACCACCGCCGATGACAAACGGCAGCGCCGCAGAGAcgccc                                                          >  2:156841/1‑140 (MQ=255)

                                                                         cGATGGATTCAACTACCCAGGTAAACGACGGCGCGCCTTTCGACATATCGGTATACGGCAAACC‑TAACTGCA‑CCAGCATGTTGGCAAGCGCCACCAGG‑ATACCACCGCCGATGACAAACGGCAGCGCCGCAGAGAcgccc                                                          >  2:503465/1‑140 (MQ=255)

                                                                            tGGTTTCACCTCCCCGGGAAACCGGCGGCGCCCTTTTCGACATAGCGGTATACGGCAACCC‑TACCCCCC‑CAAGTTTTTTGGCAGGCGCCCCCGGG‑ACCCCACCGCCGATGACAAACGGCAGCGCCGCAGAGAcgcccgcc                                                       <  2:422510/140‑1 (MQ=255)

                                                                             ggATTCAACTACCCAGGTAAACGACGGCGCGCCTTTCGACATATCGGTATACGGCAAACC‑TAACTGCA‑CCAGCATGTTGGCAAGCGCCACCAGG‑ATACCACCGCCGATGACAAACGGCAGCGCCGCAGAGACGCCCGCCa                                                      >  2:1880388/1‑140 (MQ=255)

                                                                             ggATTCAACTACCCAGGTAAACGACGGCGCGCCTTTCGACATATCGGTATACGGCAAACC‑TAACTGCA‑CCAGCATGTTGGCAAGCGCCACCAGG‑ATACCACCGCCGATGACAAACGGCAGCGCCGCAGAGACGCCCGCCa                                                      >  1:1302020/1‑140 (MQ=255)

                                                                                     cTACCCAGGTAAACGACGGCGCGCCTTTCGACATATCGGTATACGGCAAACC‑TAACTGCA‑CCAGCATGTTGGCAAGCGCCACCAGG‑ATACCACCGCCGATGACAAACGGCAGCGCCGCAGAGACGCCCGCCATCAGGTgg                                              >  1:111864/1‑140 (MQ=255)

                                                                                       cccaaGGAAAACGACGCCGCGCTTTTCACCATACGGTTACACGGAAACCC‑AACCTGCA‑CCACCGTGTGGGCAAGCGCCCCCAGA‑ATCCCACCGCCGATGACAAACGGCAGCGCCGCAGAGACGCCCGCCATCAGGTGGCt                                            <  2:1244595/136‑1 (MQ=255)

                                                                                           aGGTAAACGACGGCGCGCCTTTCGACATATCGGTATACGGCAAACC‑TAACTGCA‑CCAGCATGTTGGCAAGCGCCACCAGG‑ATACCACCGCCGATGACAAACGGCAGCGCCGCAGAGACGCCCGCCATCAGGTGGCtcatc                                        >  1:1163987/1‑140 (MQ=255)

                                                                                           aGGTAAACGACGGCGCGCCTTTCGACATATCGGTATACGGCAAACC‑TAACTGCA‑CCAGCATGTTGGCAAGCGCCACCAGG‑ATACCACCGCCGATGACAAACGGCAGCGCCGCAGAGACGCCCGCCATCAGGTGGCtcatc                                        >  1:349169/1‑140 (MQ=255)

                                                                                             gTAAACGACGGCGCGCCTTTCGACATATCGGTATACGGCAAACC‑TAACTGCA‑CCAGCATGTTGGCAAGCGCCACCAGG‑ATACCACCGCCGATGACAAACGGCAGCGCCGCAGAGACGCCCGCCATCAGGTGGCTCATCAc                                      >  1:2318118/1‑140 (MQ=255)

                                                                                             gTAAACGACGGCGCGCCTTTCGACATATCGGTATACGGCAAACC‑TAACTGCA‑CCAGCATGTTGGCAAGCGCCACCAGG‑ATACCACCGCCGATGACAAACGGCAGCGCCGCAGAGACGCCCGCCATCAGGTGGCTCATCAc                                      >  2:1917866/1‑140 (MQ=255)

                                                                                             gTAAACGACGGCGCGCCTTTCGACATATCGGTATACGGCAAACC‑TAACTGCA‑CCAGCATGTTGGCAAGCGCCACCAGG‑ATACCACCGCCGATGACAAACGGCAGCGCCGCAGAGACGCCCGCCATCAGGTGGCTCATCAc                                      >  2:1672148/1‑140 (MQ=255)

                                                                                                     cgGCGCGCCTTTCGACATATCGGTATACGGCAAACC‑TAACTGCA‑CCAGCATGTTGGCAAGCGCCACCAGG‑ATACCACCACCGATGACAAACGGCAGCGCCGCCGAGACGCCCGCCATCAGGTGGCTCATCACGCTACCGc                              >  2:457604/1‑140 (MQ=255)

                                                                                                                   acaatagggTATACGGGAAACCTGACCACCA‑CCCGCTTGGGGGCAAGCCCCCCAAGG‑ACCCCGCCGCCGATGACAAACGGCAGCGCCGCAGAGACGCCCGCCATCAGGTGGCTCATCACGCTACCGCTTTGCACTTCCTg                 <  2:1429883/133‑1 (MQ=255)

                                                                                                                   aCATATCGGTATACGGCAACCC‑AACCTGCC‑CCAGCATGTGGGCAAGCCCCCCCAGG‑ATCCCACCGCCGATGACAAACGGCAGCGCCGCAGAGACGCCCGCCATCAGGTGGCTCATCACGCTACCGCTTTGCACTTCCTGt                <  2:1940732/140‑1 (MQ=255)

                                                                                                                       atCGGTATACGGCAAACC‑TAACTGCA‑CCAGCATGTTGGCAAGCGCCACCAGG‑ATACCACCGCCGATGACAAACGGCAGCGCCGCAGAGACGCCCGCCATCAGGTGGCTCATCACGCTACCGCTTTGCACTTCCTGTTTGc            >  1:2423654/1‑140 (MQ=255)

                                                                                                                         cGGTATACGGCAAACC‑TAACTGCA‑CCAGCATGTTGGCAAGCGCCACCAGG‑ATACCACCGCCGATGACAAACGGCAGCGCCGCAGAGACGCCCGCCATCAGGTGGCTCATCACGCTACCGCTTTGCACTTCCTGTTTGCCa          >  1:823923/1‑140 (MQ=255)

                                                                                                                         cGGTATACGGCAAACC‑TAACTGCA‑CCAGCATGTTGGCAAGCGCCACCAGG‑ATACCACCGCCGATGACAAACGGCAGCGCCGCAGAGACGCCCGCCATCAGGTGGCTCATCACGCTACCGCTTTGCACTTCCTGTTTGCCa          >  1:557980/1‑140 (MQ=255)

                                                                                                                               acgcaaaaCC‑TACCTCCA‑CCAGATTGTGGGCAGGCCCCACCAGA‑ATCCCCCCGCCGATGACAAACGGCAGCGCCGCAGAGACGCCCGCCATCAGGTGGCTCATCACGCTACCGCTTTGCACTTCCTGTTTGCCAAGCTTc    <  1:291571/135‑1 (MQ=255)

                                                                                                                                cGGCAAACC‑CAACCCCCCCCAGCTTG‑TGGCAAGCCCCCCCAGGAATCCCACCGCCGATGACAAACGGCAGCGCCGCAGAGACGCCCGCCATCAGGTGGCTCATCACGCTACCGCTTTGCACTTCCTGTTTGCCAAGCTTc    <  1:644044/140‑1 (MQ=255)

                                                                                                                                 ggCAAACC‑TAACTGCA‑CCAGCATGTTGGCAAGCGCCACCAGG‑ATACCACCGCCGATGACAAACGGCAGCGCCGCAGAGACGCCCGCCATCAGGTGGCTCATCACGCTACCGCTTTGCACTTCCTGTTTGCCAAGCTTCAc  >  2:28562/1‑140 (MQ=255)

                                                                                                                                 ggCAAACC‑TAACTGCA‑CCAGCATGTTGGCAAGCGCCACCAGG‑ATACCACCGCCGATGACAAACGGCAGCGCCGCAGAGACGCCCGCCATCAGGTGGCTCATCACGCTACCGCTTTGCACTTCCTGTTTGCCAAGCTTCAc  >  2:2347802/1‑140 (MQ=255)

                                                                                                                                 ggCAAACC‑TAACTGCA‑CCAGCATGTTGGCAAGCGCCACCAGG‑ATACCACCGCCGATGACAAACGGCAGCGCCGCAGAGACGCCCGCCATCAGGTGGCTCATCACGCTACCGCTTTGCACTTCCTGTTTGCCAAGCTTCAc  >  2:1366186/1‑140 (MQ=255)

                                                                                                                                 ggCAAACC‑TAACTGCA‑CCAGCATGTTGGCAAGCGCCACCAGG‑ATACCACCGCCGATGACAAACGGCAGCGCCGCAGAGACGCCCGCCATCAGGTGGCTCATCACGCTACCGCTTTGCACTTCCTGTTTGCCAAGCTTCAc  >  1:1008912/1‑140 (MQ=255)

GCCGGTTTATCGGCAATCGACGAGGCAATATAAGCGCCCATGATGGGGATCATAAAGGTGAAGCCAAGGTAACCGATGGATTCAACTACCCAGGTAAACGACGGCGCGCCTTTCGACATATCGGTATACGGCAAACC‑GAACTGCA‑CCAGCATGTTGGCAAGCGCCACCAGG‑ATACCACCGCCGATGACAAACGGCAGCGCCGCAGAGACGCCCGCCATCAGGTGGCTCATCACGCTACCGCTTTGCACTTCCTGTTTGCCAAGCTTCAC  >  NC_000913/4091753‑4092021

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A