Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A13 F73 I1 R1 29 168.5 5953234 99.3% 5911561 139.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,113,614 G→T V108F (GTC→TTC)  uspD → universal stress protein D

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,113,6140GT99.2% 917.7 / ‑3.7 257V108F (GTC→TTC) uspDuniversal stress protein D
Reads supporting (aligned to +/- strand):  ref base G (1/1);  new base T (101/154);  total (102/155)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 260 total aligned reads displayed.

GAAGAATAAGTCGGATAACAAGCTGTATAAACTGACGAAAAATATTCAATGGCCGAAGACAAAACTGCGTATTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTGTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATGCCGGCATATCGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTG  >  NC_000913/4113478‑4113745
                                                                                                                                        |                                                                                                                                   
gaagaaTAAGTCGGATAACAAGCTGTATAAACTGACGAAAAATATTCAATGGCCGAAGACAAAACTGCGTATTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCt                                                                                                                                  <  1:77029/140‑1 (MQ=255)
gaagaaTAAGTCGGATAACAAGCTGTATAAACTGACGAAAAATATTCAATGGCCGAAGACAAAACTGCGTATTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCt                                                                                                                                  <  2:1133909/140‑1 (MQ=255)
gaagaaTAAGTCGGATAACAAGCTGTATAAACTGACGAAAAATATTCAATGGCCGAAGACAAAACTGCGTATTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCt                                                                                                                                  <  2:429527/140‑1 (MQ=255)
 aagaaTAAGTCGGATAACAAGCTGTATAAACTGACGAAAAATATTCAATGGCCGAAGACAAAACTGCGTATTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCtg                                                                                                                                 <  2:2170759/140‑1 (MQ=255)
   gaaTAAGTCGGATAACAAGCTGTATAAACTGACGAAAAATATTCAATGGCCGAAGACAAAACTGCGTATTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCtgtg                                                                                                                               <  2:1721010/140‑1 (MQ=255)
    aaTAAGTCGGATAACAAGCTGTATAAACTGACGAAAAATATTCAATGGCCGAAGACAAAACTGCGTATTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTgg                                                                                                                              <  1:1255539/140‑1 (MQ=255)
     aTAAGTCGGATAACAAGCTGTATAAACTGACGAAAAATATTCAATGGCCGAAGACAAAACTGCGTATTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGt                                                                                                                             <  2:207718/140‑1 (MQ=255)
        aGTCGGATAACAAGCTGTATAAACTGACGAAAAATATTCAATGGCCGAAGACAAAACTGCGTATTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGtcat                                                                                                                          >  2:343179/1‑140 (MQ=255)
        aGTCGGATAACAAGCTGTATAAACTGACGAAAAATATTCAATGGCCGAAGACAAAACTGCGTATTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGtcat                                                                                                                          >  2:1757383/1‑140 (MQ=255)
        aGTCGGATAACAAGCTGTATAAACTGACGAAAAATATTCAATGGCCGAAGACAAAACTGCGTATTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGtcat                                                                                                                          <  2:1820246/140‑1 (MQ=255)
        aGTCGGATAACAAGCTGTATAAACTGACGAAAAATATTCAATGGCCGAAGACAAAACTGCGTATTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGtcat                                                                                                                          <  2:2507660/140‑1 (MQ=255)
        aGTCGGATAACAAGCTGTATAAACTGACGAAAAATATTCAATGGCCGAAGACAAAACTGCGTATTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGtcat                                                                                                                          >  1:1907520/1‑140 (MQ=255)
           cGGATAACAAGCTGTATAAACTGACGAAAAATATTCAATGGCCGAAGACAAAACTGCGTATTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGtcatcat                                                                                                                       <  2:1822996/140‑1 (MQ=255)
           cGGATAACAAGCTGTATAAACTGACGAAAAATATTCAATGGCCGAAGACAAAACTGCGTATTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGtcatcat                                                                                                                       <  1:105668/140‑1 (MQ=255)
              aTAACAAGCTGTATAAACTGACGAAAAATATTCAATGGCCGAAGACAAAACTGCGTATTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATGATCAc                                                                                                                    >  1:1036173/1‑140 (MQ=255)
               tAACAAGCTGTATAAACTGACGAAAAATATTCAATGGCCGAAGACAAAACTGCGTATTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACt                                                                                                                   <  1:2098398/140‑1 (MQ=255)
               tAACAAGCTGTATAAACTGACGAAAAATATTCAATGGCCGAAGACAAAACTGCGTATTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACt                                                                                                                   <  1:284238/140‑1 (MQ=255)
               tAACAAGCTGTATAAACTGACGAAAAATATTCAATGGCCGAAGACAAAACTGCGTATTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACt                                                                                                                   <  2:2265559/140‑1 (MQ=255)
               tAACAAGCTGTATAAACTGACGAAAAATATTCAATGGCCGAAGACAAAACTGCGTATTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACt                                                                                                                   <  2:77921/140‑1 (MQ=255)
               tAACAAGCTGTATAAACTGACGAAAAATATTCAATGGCCGAAGACAAAACTGCGTATTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACt                                                                                                                   <  2:2013711/140‑1 (MQ=255)
                aaCAAGCTGTATAAACTGACGAAAAATATTCAATGGCCGAAGACAAAACTGCGTATTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACTc                                                                                                                  >  1:395990/1‑140 (MQ=255)
                 aCAAGCTGTATAAACTGACGAAAAATATTCAATGGCCGAAGACAAAACTGCGTATTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACTCa                                                                                                                 <  1:1765781/140‑1 (MQ=255)
                            aaaCTGACGAAAAATATTCAATGGCCGAAGACAAAACTGCGTATTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCg                                                                                                      >  2:1455859/1‑140 (MQ=255)
                              aCTGACGAAAAATATTCAATGGCCGAAGACAAAACTGCGTATTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACt                                                                                                                   <  1:1811559/125‑1 (MQ=255)
                               cTGACGAAAAATATTCAATGGCCGAAGACAAAACTGCGTATTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGttt                                                                                                   <  1:1455859/140‑1 (MQ=255)
                                tGACGAAAAATATTCAATGGCCGAAGACAAAACTGCGTATTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACt                                                                                                                   <  2:2930625/123‑1 (MQ=255)
                                tGACGAAAAATATTCAATGGCCGAAGACAAAACTGCGTATTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTg                                                                                                  >  1:670871/1‑140 (MQ=255)
                                  aCGAAAAATATTCAATGGCCGAAGACAAAACTGCGTATTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGAt                                                                                                <  2:316084/140‑1 (MQ=255)
                                   cGAAAAATATTCAATGGCCGAAGACAAAACTGCGTATTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATg                                                                                               >  2:28392/1‑140 (MQ=255)
                                   cGAAAAATATTCAATGGCCGAAGACAAAACTGCGTATTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATg                                                                                               >  2:1295160/1‑140 (MQ=255)
                                   cGAAAAATATTCAATGGCCGAAGACAAAACTGCGTATTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATg                                                                                               >  2:2455633/1‑140 (MQ=255)
                                   cGAAAAATATTCAATGGCCGAAGACAAAACTGCGTATTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATg                                                                                               >  2:1122097/1‑140 (MQ=255)
                                   cGAAAAATATTCAATGGCCGAAGACAAAACTGCGTATTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATg                                                                                               >  1:996141/1‑140 (MQ=255)
                                   cGAAAAATATTCAATGGCCGAAGACAAAACTGCGTATTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATg                                                                                               >  2:837715/1‑140 (MQ=255)
                                   cGAAAAATATTCAATGGCCGAAGACAAAACTGCGTATTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATg                                                                                               <  1:568408/140‑1 (MQ=255)
                                   cGAAAAATATTCAATGGCCGAAGACAAAACTGCGTATTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATg                                                                                               >  2:97744/1‑140 (MQ=255)
                                   cGAAAAATATTCAATGGCCGAAGACAAAACTGCGTATTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATg                                                                                               >  1:124025/1‑140 (MQ=255)
                                   cGAAAAATATTCAATGGCCGAAGACAAAACTGCGTATTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATg                                                                                               >  1:269706/1‑140 (MQ=255)
                                   cGAAAAATATTCAATGGCCGAAGACAAAACTGCGTATTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATg                                                                                               >  1:2491882/1‑140 (MQ=255)
                                   cGAAAAATATTCAATGGCCGAAGACAAAACTGCGTATTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATg                                                                                               >  1:2324426/1‑140 (MQ=255)
                                     aaaaaTATTCAATGGCCGAAGACAAAACTGCGTATTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATGcc                                                                                             <  1:844180/140‑1 (MQ=255)
                                          tatTCAATGGCCGAAGACAAAACTGCGTATTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATGCCGGCat                                                                                        >  1:2076497/1‑140 (MQ=255)
                                              cAATGGCCGAAGACAAAACTGCGTATTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATGCCGGCATATcg                                                                                    <  2:2324426/140‑1 (MQ=255)
                                                aTGGCCGAAGACAAAACTGCGTATTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATGCCGGCATATcgcg                                                                                  <  1:2786068/140‑1 (MQ=255)
                                                 tGGCCGAAGACAAAACTGCGTATTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATGCCGGCATATCGCgg                                                                                 >  2:2529594/1‑140 (MQ=255)
                                                  ggCCGAAGACAAAACTGCGTATTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATGCCGGCATATCGCggg                                                                                <  2:623341/140‑1 (MQ=255)
                                                  ggCCGAAGACAAAACTGCGTATTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATGCCGGCATATCGCggg                                                                                <  2:1907520/140‑1 (MQ=255)
                                                   gCCGAAGACAAAACTGCGTATTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATGCCGGCATATCGCGGga                                                                               <  1:2920418/140‑1 (MQ=255)
                                                    ccGAAGACAAAACTGCGTATTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATGCCGGCATATCGCGGgat                                                                              <  1:1464889/140‑1 (MQ=255)
                                                    ccGAAGACAAAACTGCGTATTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATGCCGGCATATCGCGGgat                                                                              >  1:2367529/1‑140 (MQ=255)
                                                    ccGAAGACAAAACTGCGTATTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATGCCGGCATATCGCGGgat                                                                              <  2:1612206/140‑1 (MQ=255)
                                                     cGAAGACAAAACTGCGTATTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATGCCGGCATATCGCGGgatg                                                                             <  2:275609/140‑1 (MQ=255)
                                                      gAAGACAAAACTGCGTATTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATGCCGGCATATCGCGGgatga                                                                            <  1:924188/140‑1 (MQ=255)
                                                      gAAGACAAAACTGCGTATTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATGCCGGCATATCGCGGgatga                                                                            <  2:2584527/140‑1 (MQ=255)
                                                      gAAGACAAAACTGCGTATTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATGCCGGCATATCGCGGgatga                                                                            <  2:222997/140‑1 (MQ=255)
                                                      gAAGACAAAACTGCGTATTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATGCCGGCATATCGCGGgatga                                                                            <  1:1403527/140‑1 (MQ=255)
                                                      gAAGACAAAACTGCGTATTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATGCCGGCATATCGCGGgatga                                                                            >  1:300726/1‑140 (MQ=255)
                                                      gAAGACAAAACTGCGTATTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATGCCGGCATATCGCGGgatga                                                                            <  2:1485353/140‑1 (MQ=255)
                                                       aaGACAAAACTGCGTTTTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATGCCGGCATATCGCGGgatgat                                                                           >  2:1779045/1‑140 (MQ=255)
                                                       aaGACAAAACTGCGTATTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATGCCGGCATATCGCGGgatgat                                                                           >  1:46746/1‑140 (MQ=255)
                                                        aGACAAAACTGCGTATTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATGCCGGCATATCGCGGGATGATc                                                                          <  1:790420/140‑1 (MQ=255)
                                                        aGACAAAACTGCGTATTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATGCCGGCATATCGCGGGATGATc                                                                          <  1:1200302/140‑1 (MQ=255)
                                                        aGACAAAACTGCGTATTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATGCCGGCATATCGCGGGATGATc                                                                          <  2:682449/140‑1 (MQ=255)
                                                        aGACAAAACTGCGTATTGAACGCGGAGAAATGCCGGAAACACAGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATGCCGGCATATCGCGGGATGATc                                                                          <  2:1422576/140‑1 (MQ=255)
                                                                cTGCGTATTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATGCCGGCATATCGCGGGATGATCAATAAGAt                                                                  <  1:1629360/140‑1 (MQ=255)
                                                                         gAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATGCCGGCATATCGCGGGATGATCAATAAGATGAGTGCGGa                                                         <  1:343179/140‑1 (MQ=255)
                                                                             gcgGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATGCCGGCATATCGCGGGATGATCAATAAGATGAGTGCGGATTTg                                                     >  1:156255/1‑140 (MQ=255)
                                                                              cgGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCAGCACTCATTTATCAACCGTTTGATGCCGGCATATCGCGGGATGATCAATAAGATGAGTGCGGATTTGc                                                    <  1:2828232/140‑1 (MQ=255)
                                                                                        ccGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATGCCGGCATATCGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGcc                                          <  1:632580/140‑1 (MQ=255)
                                                                                          ggAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATGCCGGCATATCGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGt                                        <  2:1353938/140‑1 (MQ=255)
                                                                                              acacTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATGCCGGCATATCGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTAt                                    <  2:652170/140‑1 (MQ=255)
                                                                                                acTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATGCCGGCATATCGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCg                                  <  1:2286804/140‑1 (MQ=255)
                                                                                                 ctgctgGAAATTATGCAAAAAGAGCAGTGCGCCCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATGCCGGCATATCGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGa                                 <  1:175932/140‑1 (MQ=255)
                                                                                                 ctgctgGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATGCCGGCATATCGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGa                                 <  2:2487652/140‑1 (MQ=255)
                                                                                                    ctgGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATGCCGGCATATCGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATaa                              >  1:1151261/1‑140 (MQ=255)
                                                                                                     tgGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATGCCGGCATATCGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAg                             >  1:1241342/1‑140 (MQ=255)
                                                                                                         aaTTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATGCCGGCATATCGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAAc                         <  1:2455633/140‑1 (MQ=255)
                                                                                                         aaTTATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATGCCGGCATATCGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAAc                         <  2:1651173/140‑1 (MQ=255)
                                                                                                           ttATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATGCCGGCATATCGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCg                       <  2:156255/140‑1 (MQ=255)
                                                                                                           ttATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATGCCGGCATATCGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCg                       <  2:2422601/140‑1 (MQ=255)
                                                                                                           ttATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATGCCGGCATATCGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCg                       <  2:2164631/140‑1 (MQ=255)
                                                                                                            tATGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCAACACTCATTTATCAACCGTTTGATGCCGGCATATAGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGc                      >  1:2393827/1‑140 (MQ=255)
                                                                                                             aagCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATGCCGGCATATCGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCt                     <  1:2489038/138‑1 (MQ=255)
                                                                                                             aTGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATGCCGGCATATCGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCt                     <  2:1233049/140‑1 (MQ=255)
                                                                                                             aTGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATGCCGGCATATCGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCt                     <  1:1729361/140‑1 (MQ=255)
                                                                                                             aTGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATGCCGGCATATCGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCt                     <  2:725671/140‑1 (MQ=255)
                                                                                                              tGCAAAAAGAGCAGTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATGCCGGCATATCGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCtt                    >  2:1889249/1‑140 (MQ=255)
                                                                                                                        gCAGTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATGCCGGCATATCGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATg          <  2:265537/140‑1 (MQ=255)
                                                                                                                        gCAGTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATGCCGGCATATCGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATg          <  1:1295160/140‑1 (MQ=255)
                                                                                                                         cAGTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATGCCGGCATATCGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGc         >  1:2169132/1‑140 (MQ=255)
                                                                                                                          aGTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATGCCGGCATATCGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCt        <  2:866811/140‑1 (MQ=255)
                                                                                                                          aGTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATGCCGGCATATCGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCt        <  2:2797144/140‑1 (MQ=255)
                                                                                                                           gTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATGCCGGCATATCGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCtg       <  2:2116983/140‑2 (MQ=255)
                                                                                                                           gTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATGCCGGCATATCGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTc       <  2:269706/140‑1 (MQ=255)
                                                                                                                           gTGCGACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATGCCGGCATATCGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTc       <  1:1668645/140‑1 (MQ=255)
                                                                                                                               gACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATGCCGGCATATCGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCt   <  1:1860344/140‑1 (MQ=255)
                                                                                                                               gACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATGCCGGCATATCGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCt   <  2:1196032/140‑1 (MQ=255)
                                                                                                                               gACCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATGCCGGCATATCGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCt   <  1:1122097/140‑1 (MQ=255)
                                                                                                                               gACCTCCTTGTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATGCCGGCATATCGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCt   <  1:2682856/140‑1 (MQ=255)
                                                                                                                                aCCTCCTTTTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATGCCGGCATATCGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTg  >  1:1709043/1‑140 (MQ=255)
                                                                                                                                        |                                                                                                                                   
GAAGAATAAGTCGGATAACAAGCTGTATAAACTGACGAAAAATATTCAATGGCCGAAGACAAAACTGCGTATTGAACGCGGAGAAATGCCGGAAACACTGCTGGAAATTATGCAAAAAGAGCAGTGCGACCTCCTTGTCTGTGGTCATCATCACTCATTTATCAACCGTTTGATGCCGGCATATCGCGGGATGATCAATAAGATGAGTGCGGATTTGCTCATCGTGCCGTTTATCGATAAGTAACCGCTTACCAGTAATGCTCCGCTG  >  NC_000913/4113478‑4113745

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A