Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A10 F73 I1 R1	34	113.1	3988162	99.3%	3960244	139.1

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,322,290	G→T	N72K (AAC→AAA)	secG ←	Sec translocon subunit SecG

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,322,290	0	G	T	100.0%	349.9 / NA	97	N72K (AAC→AAA)	secG	Sec translocon subunit SecG
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (41/56); total (41/56)

GGCACGGATACTACTTTTTAGTTCGGGATATCGCTGGTCGGCTTAGCCGGAGCAGCTGGCTGAGTTTGTTCGGTTTTCGCCGGTGCACTCAGATTTTCCCATTCGCTACCTTTATTGGTTTTGTTGCTATTGATGTTACCCAGCACCAGACTGATGATGAAGAATAACGTTGCCAGCAGCGCCGTCATGCGGGTCATGAAGTTACCAGAACCACTTGAACCAAACAGCGTAGCGGAAGCGCCTGCTCCGAAGGAGGCTCCCATATCAG  >  NC_000913/3322156‑3322423

ggCACGGATACTACTTTTTAGTTCGGGATATCGCTGGTCGGCTTAGCCGGAGCAGCTGGCTGAGTTTGTTCGGTTTTCGCCGGTGCACTCAGATTTTCCCATTCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTAcc                                                                                                                                  <  2:560906/140‑1 (MQ=255)

ggCACGGATACTACTTTTTAGTTCGGGATATCGCTGGTCGGCTTAGCCGGAGCAGCTGGCTGAGTTTGTTCGGTTTTCGCCGGTGCACTCAGATTTTCCCATTCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTAcc                                                                                                                                  <  1:1649610/140‑1 (MQ=255)

ggCACGGATACTACTTTTTAGTTCGGGATATCGCTGGTCGGCTTAGCCGGAGCAGCTGGCTGAGTTTGTTCGGTTTTCGCCGGTGCACTCAGATTTTCCCATTCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTAcc                                                                                                                                  <  2:459117/140‑1 (MQ=255)

ggCACGGATACTACTTTTTAGTTCGGGATATCGCTGGTCGGCTTAGCCGGAGCAGCTGGCTGAGTTTGTTCGGTTTTCGCCGGTGCACTCAGATTTTCCCATTCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTAcc                                                                                                                                  <  2:1936215/140‑1 (MQ=255)

ggCACGGATACTACTTTTTAGTTCGGGATATCGCTGGTCGGCTTAGCCGGAGCAGCTGGCTGAGTTTGTTCGGTTTTCGCCGGTGCACTCAGATTTTCCCATTCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTAcc                                                                                                                                  <  1:1531889/140‑1 (MQ=255)

ggCACGGATACTACTTTTTAGTTCGGGATATCGCTGGTCGGCTTAGCCGGAGCAGCTGGCTGAGTTTGTTCGGTTTTCGCCGGTGCACTCAGATTTTCCCATTCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTAcc                                                                                                                                  <  2:840584/140‑1 (MQ=255)

ggCACGGATACTACTTTTTAGTTCGGGATATCGCTGGTCGGCTTAGCCGGAGCAGCTGGCTGAGTTTGTTCGGTTTTCGCCGGTGCACTCAGATTTTCCCATTCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTAcc                                                                                                                                  <  1:942829/140‑1 (MQ=255)

ggCACGGATACTACTTTTTAGTTCGGGATATCGCTGGTCGGCTTAGCCGGAGCAGCTGGCTGAGTTTGTTCGGTTTTCGCCGGTGCACTCAGATTTTCCCATTCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTAcc                                                                                                                                  <  1:948083/140‑1 (MQ=255)

ggCACGGATACTACTTTTTAGTTCGGGATATCGCTGGTCGGCTTAGCCGGAGCAGCTGGCTGAGTTTGTTCGGTTTTCGCCGGTGCACTCAGATTTTCCCATTCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTAcc                                                                                                                                  <  1:1245638/140‑1 (MQ=255)

ggCACGGATACTACTTTTTAGTTCGGGATATCGCTGGTCGGCTTAGCCGGAGCAGCTGGCTGAGTTTGTTCGGTTTTCGCCGGTGCACTCAGATTTTCCCATTCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTAcc                                                                                                                                  <  2:730739/140‑1 (MQ=255)

ggCACGGATACTACTTTTTAGTTCGGGATATCGCTGGTCGGCTTAGCCGGAGCAGCTGGCTGAGTTTGTTCGGTTTTCGCCGGTGCACTCAGATTTTCCCATTCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTAcc                                                                                                                                  <  2:323334/140‑1 (MQ=255)

ggCACGGATACTACTTTTTAGTTCGGGATATCGCTGGTCGGCTTAGCCGGAGCAGCTGGCTGAGTTTGTTCGGTTTTCGCCGGTGCACTCAGATTTTCCCATTCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTAcc                                                                                                                                  <  1:1300253/140‑1 (MQ=255)

     ggATACTACTTTTTAGTTCGGGATATCGCTGGTCGGCTTAGCCGGAGCAGCTGGCTGAGTTTGTTCGGTTTTCGCCGGTGCACTCAGATTTTCCCATTCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTACCCAGCa                                                                                                                             <  2:1180238/140‑1 (MQ=255)

      gATACTACTTTTTAGTTCGGGATATCGCTGGTCGGCTTAGCCGGAGCAGCTGGCTGAGTTTGTTCGGTTTTCGCCGGTGCACTCAGATTTTCCCATTCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTACCCAGCAc                                                                                                                            <  2:835748/140‑1 (MQ=255)

      gATACTACTTTTTAGTTCGGGATATCGCTGGTCGGCTTAGCCGGAGCAGCTGGCTGAGTTTGTTCGGTTTTCGCCGGTGCACTCAGATTTTCCCATTCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTACCCAGCAc                                                                                                                            <  2:852734/140‑1 (MQ=255)

       aTACTACTTTTTAGTTCGGGATATCGCTGGTCGGCTTAGCCGGAGCAGCTGGCTGAGTTTGTTCGGTTTTCGCCGGTGCACTCAGATTTTCCCATTCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTAcc                                                                                                                                  <  2:262660/133‑1 (MQ=255)

       aTACTACTTTTTAGTTCGGGATATCGCTGGTCGGCTTAGCCGGAGCAGCTGGCTGAGTTTGTTCGGTTTTCGCCGGTGCACTCAGATTTTCCCATTCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTAcc                                                                                                                                  >  1:262660/1‑133 (MQ=255)

       aTACTACTTTTTAGTTCGGGATATCGCTGGTCGGCTTAGCCGGAGCAGCTGGCTGAGTTTGTTCGGTTTTCGCCGGTGCACTCAGATTTTCCCATTCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTACCCAGCAcc                                                                                                                           >  2:1499549/1‑140 (MQ=255)

          ctactTTTTAGTTCGGGATATCGCTGGTCGGCTTAGCCGGAGCAGCTGGCTGAGTTTGTTCGGTTTTCGCCGGTGCACTCAGATTTTCCCATTCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTACCCAGCACCAGa                                                                                                                        <  2:1979803/140‑1 (MQ=255)

          ctactTTTTAGTTCGGGATATCGCTGGTCGGCTTAGCCGGAGCAGCTGGCTGAGTTTGTTCGGTTTTCGCCGGTGCACTCAGATTTTCCCATTCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTACCCAGCACCAGa                                                                                                                        <  2:482102/140‑1 (MQ=255)

           tactTTTTAGTTCGGGATATCGCTGGTCGGCTTAGCCGGAGCAGCTGGCTGAGTTTGTTCGGTTTTCGCCGGTGCACTCAGATTTTCCCATTCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTACCCAGCACCAGAc                                                                                                                       <  2:636673/140‑1 (MQ=255)

              tttttAGTTCGGGATATCGCTGGTCGGCTTAGCCGGAGCAGCTGGCTGAGTTTGTTCGGTTTTCGCCGGTGCACTCAGATTTTCCCATTCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTACCCAGCACCAGACtga                                                                                                                    <  2:1728798/140‑1 (MQ=255)

              tttttAGTTCGGGATATCGCTGGTCGGCTTAGCCGGAGCAGCTGGCTGAGTTTGTTCGGTTTTCGCCGGTGCACTCAGATTTTCCCATTCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTACCCAGCACCAGACtga                                                                                                                    <  2:568102/140‑1 (MQ=255)

                tttAGTTCGGGATATCGCTGGTCGGCTTAGCCGGAGCAGCTGGCTGAGTTTGTTCGGTTTTCGCCGGTGCACTCAGATTTTCCCATTCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTACCCAGCACCAGACtgatg                                                                                                                  >  1:1007127/1‑140 (MQ=255)

                 ttAGTTCGGGATATCGCTGGTCGGCTTAGCCGGAGCAGCTGGCTGAGTTTGTTCGGTTTTCGCCGGTGCACTCAGATTTTCCCATTCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTAcc                                                                                                                                  <  2:1155724/123‑1 (MQ=255)

                 ttAGTTCGGGATATCGCTGGTCGGCTTAGCCGGAGCAGCTGGCTGAGTTTGTTCGGTTTTCGCCGGTGCACTCAGATTTTCCCATTCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTAcc                                                                                                                                  >  1:1155724/1‑123 (MQ=255)

                 ttAGTTCGGGATATCGCTGGTCGGCTTAGCCGGAGCAGCTGGCTGAGTTTGTTCGGTTTTCGCCGGTGCACTCAGATTTTCCCATTCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTACCCAGCACCAGACtgatga                                                                                                                 >  1:120058/1‑140 (MQ=255)

                  tAGTTCGGGATATCGCTGGTCGGCTTAGCCGGAGCAGCTGGCTGAGTTTGTTCGTTTTTCGCCGGTGCACTCAGATTTTCCCATTCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTACCCAGCACCAGACtgatgat                                                                                                                <  1:917207/140‑1 (MQ=255)

                  tAGTTCGGGATATCGCTGGTCGGCTTAGCCGGAGCAGCTGGCTGAGTTTGTTCGGTTTTCGCCGGTGCACTCAGATTTTCCCATTCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTACCCAGCACCAGACtgatgat                                                                                                                <  1:1963999/140‑1 (MQ=255)

                  tAGTTCGGGATATCGCTGGTCGGCTTAGCCGGAGCAGCTGGCTGAGTTTGTTCGGTTTTCGCCGGTGCACTCAGATTTTCCCATTCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTACCCAGCACCAGACtgatgat                                                                                                                <  1:1668509/140‑1 (MQ=255)

                  tAGTTCGGGATATCGCTGGTCGGCTTAGCCGGAGCAGCTGGCTGAGTTTGTTCGGTTTTCGCCGGTGCACTCAGATTTTCCCATTCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTACCCAGCACCAGACtgatgat                                                                                                                <  1:458508/140‑1 (MQ=255)

                       cGGGATATCGCTGGTCGGCTTAGCCGGAGCAGCTGGCTGAGTTTGTTCGGTTTTGGCCGGTGCACTCAGATTTTCCCATTCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTACCCAGCACCAGACTGATGATgaaga                                                                                                           <  1:1849529/140‑1 (MQ=255)

                       cGGGATATCGCTGGTCGGCTTAGCCGGAGCAGCTGGCTGAGTTTGTTCGGTTTTCGCCGGTGCACTCAGATTTTCCCATTCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTACCCAGCACCAGACTGATGATgaaga                                                                                                           >  2:1301075/1‑140 (MQ=255)

                       cGGGATATCGCTGGTCGGCTTAGCCGGAGCAGCTGGCTGAGTTTGTTCGGTTTTCGCCGGTGCACTCAGATTTTCCCATTCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTACCCAGCACCAGACTGATGATgaaga                                                                                                           >  1:383033/1‑140 (MQ=255)

                               cGCTGGTCGGCTTAGCCGGAGCAGCTGGCTGAGTTTGTTCGGTTTTCGCCGGTGCACTCAGATTTTCCCATTCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTACCCAGCACCAGACTGATGATGAAGAATAACGtt                                                                                                   >  1:784625/1‑140 (MQ=255)

                                 cTGGTCGGCTTAGCCGGAGCAGCTGGCTGAGTTTGTTCGGTTTTCGCCGGTGCACTCAGATTTTCCCATTCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTACCCAGCACCAGACTGATGATGAAGAATAACGTTGc                                                                                                 >  2:442515/1‑140 (MQ=255)

                                    gTCGGCTTAGCCGGAGCAGCTGGCTGAGTTTGTTCGGTTTTCGCCGGTGCACTCAGATTTTCCCATTCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTACCCAGCACCAGACTGATGATGAAGAATAACGTTGCcag                                                                                              >  2:1479058/1‑140 (MQ=255)

                                            aGCCGGAGCAGCTGGCTGAGTTTGTTCGGTTTTCGCCGGTGCACTCAGATTTTCCCATTCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTACCCAGCACCAGACTGATGATGAAGAATAACGTTGCCAGCAGCGCCg                                                                                      >  1:370971/1‑140 (MQ=255)

                                                  agcagcTGGCTGAGTTTGTTCGGTTTTCGCCGGTGCACTCAGATTTTCCCATTCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTACCCAGCACCAGACTGATGATGAAGAATAACGTTGCCAGCAGCGCCGTCATGc                                                                                <  2:1007127/140‑1 (MQ=255)

                                                  agcagcTGGCTGAGTTTGTTCGGTTTTCGCCGGTGCACTCAGATTTTCCCATTCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTACCCAGCACCAGACTGATGATGAAGAATAACGTTGCCAGCAGCGCCGTCATGc                                                                                >  2:185846/1‑140 (MQ=255)

                                                  agcagcTGGCTGAGTTTGTTCGGTTTTCGCCGGTGCACTCAGATTTTCCCATTCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTACCCAGCACCAGACTGATGATGAAGAATAACGTTGCCAGCAGCGCCGTCATGc                                                                                >  2:1318782/1‑140 (MQ=255)

                                                  agcagcTGGCTGAGTTTGTTCGGTTTTCGCCGGTGCACTCAGATTTTCCCATTCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTACCCAGCACCAGACTGATGATGAAGAATAACGTTGCCAGCAGCGCCGTCATGc                                                                                <  1:1644821/140‑1 (MQ=255)

                                                            tgAGTTTGTTCGGTTTTCGCCGGTGCACTCAGATTTTCCCATTCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTACCCAGCACCAGACTGATGATGAAGAATAACGTTGCCAGCAGCGCCGTCATGCGGGTCATGaa                                                                      <  1:410417/140‑1 (MQ=255)

                                                            tgAGTTTGTTCGGTTTTCGCCGGTGCACTCAGATTTTCCCATTCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTACCCAGCACCAGACTGATGATGAAGAATAACGTTGCCAGCAGCGCCGTCATGCGGGTCATGaa                                                                      <  1:860163/140‑1 (MQ=255)

                                                            tgAGTTTGTTCGGTTTTCGCCGGTGCACTCAGATTTTCCCATTCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTACCCAGCACCAGACTGATGATGAAGAATAACGTTGCCAGCAGCGCCGTCATGCGGGTCATGaa                                                                      >  1:1958614/1‑140 (MQ=255)

                                                                 ttGTTCGGTTTTCGCCGGTGCACTCAGATTTTCCCATTCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTACCCAGCACCAGACTGATGATGAAGAATAACGTTGCCAGCAGCGCCGTCATGc                                                                                <  1:1527687/125‑1 (MQ=255)

                                                                 ttGTTCGGTTTTCGCCGGTGCACTCAGATTTTCCCATTCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTACCCAGCACCAGACTGATGATGAAGAATAACGTTGCCAGCAGCGCCGTCATGc                                                                                >  2:1527687/1‑125 (MQ=255)

                                                                    ttCGGTTTTCGCCGGTGCACTCAGATTTTCCCATTCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTACCCAGCACCAGACTGATGATGAAGAATAACGTTGCCAGCAGCGCCGTCATGCGGGTCATGaa                                                                      >  2:647693/1‑132 (MQ=255)

                                                                    ttCGGTTTTCGCCGGTGCACTCAGATTTTCCCATTCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTACCCAGCACCAGACTGATGATGAAGAATAACGTTGCCAGCAGCGCCGTCATGCGGGTCATGaa                                                                      <  1:647693/132‑1 (MQ=255)

                                                                     tCGGTTTTCGCCGGTGCACTCAGATTTTCCCATTCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTACCCAGCACCAGACTGATGATGAAGAATAACGTTGCCAGCAGCGCCGTCATGCGGGTCATGAAGTTACCAGa                                                             <  2:1890834/140‑1 (MQ=255)

                                                                        gTTTTCGCCGGTGCACTCAGATTTTCCCATTCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTACCCAGCACCAGACTGATGATGAAGAATAACGTTGCCAGCAGCGCCGTCATGCGGGTCATGAAGTTACCAGAAcc                                                          >  2:1940118/1‑140 (MQ=255)

                                                                          tttCGCCGGTGCACTCAGATTTTCCCATTCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTACCCAGCACCAGACTGATGATGAAGAATAACGTTGCCAGCAGCGCCGTCATGCGGGTCATGAAGTTACCAGAACCAc                                                        <  2:1769532/140‑1 (MQ=255)

                                                                          tttCGCCGGTGCACTCAGATTTTCCCATTCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTACCCAGCACCAGACTGATGATGAAGAATAACGTTGCCAGCAGCGCCGTCATGCGGGTCATGAAGTTACCAGAACCAc                                                        <  1:1297772/140‑1 (MQ=255)

                                                                               ccGGTGCACTCAGATTTTCCCATTCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTACCCAGCACCAGACTGATGATGAAGAATAACGTTGCCAGCAGCGCCGTCATGCGGGTCATGAAGTTACCAGAACCACTTGaa                                                   <  1:1151140/140‑1 (MQ=255)

                                                                                  gTGCACTCAGATTTTCCCATTCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTACCCAGCACCAGACTGATGATGAAGAATAACGTTGCCAGCAGCGCCGTCATGCGGGTCATGAAGTTACCAGAACCACTTGAACCa                                                <  2:693954/140‑1 (MQ=255)

                                                                                   tGCACTCAGATTTTCCCATTCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTACCCAGCACCAGACTGATGATGAAGAATAACGTTGCCAGCAGCGCCGTCATGCGGGTCATGAAGTTACCAGAACCACTTGAACCaa                                               <  1:1725792/140‑1 (MQ=255)

                                                                                    gCACTCAGATTTTCCCATTCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTACCCAGCACCAGACTGATGATGAAGAATAACGTTGCCAGCAGCGCCGTCATGCGGGTCATGAAGTTACCAGAACCACTTGAACCaaa                                              <  2:370971/140‑1 (MQ=255)

                                                                                    gCACTCAGATTTTCCCATTCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTACCCAGCACCAGACTGATGATGAAGAATAACGTTGCCAGCAGCGCCGTCATGCGGGTCATGAAGTTACCAGAACCACTTGAACCaaa                                              <  1:164485/140‑1 (MQ=255)

                                                                                            aTTTTCCCATTCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTACCCAGCACCAGACTGATGATGAAGAATAACGTTGCCAGCAGCGCCGTCATGCGGGTCATGAAGTTACCAGAACCACTTGAACCAAACAGCGTAg                                      >  1:1720666/1‑140 (MQ=255)

                                                                                              tttCCCATTCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTACCCAGCACCAGACTGATGATGAAGAATAACGTTGCCAGCAGCGCCGTCATGCGGGTCATGAAGTTACCAGAACCACTTGAACCAAACAGCGTAGCg                                    <  1:442515/140‑1 (MQ=255)

                                                                                                  ccATTCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTACCCAGCACCAGACTGATGATGAAGAATAACGTTGCCAGCAGCGCCGTCATGCGGGTCATGAAGTTACCAGAACCACTTGAACCAAACAGCGTAGCGGAAg                                >  1:1247777/1‑140 (MQ=255)

                                                                                                    aTTCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTACCCAGCACCAGACTGATGATGAAGAATAACGTTGCCAGCAGCGCCGTCATGCGGGTCATGAAGTTACCAGAACCACTTGAACCAAACAGCGTAGCGGAAgcg                              >  2:1203581/1‑140 (MQ=255)

                                                                                                      tCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTACCCAGCACCAGACTGATGATGAAGAATAACGTTGCCAGCAGCGCCGTCATGCGGGTCATGAAGTTACCAGAACCACTTGAACCaaa                                              <  1:1126430/122‑1 (MQ=255)

                                                                                                      tCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTACCCAGCACCAGACTGATGATGAAGAATAACGTTGCCAGCAGCGCCGTCATGCGGGTCATGAAGTTACCAGAACCACTTGAACCaaa                                              >  2:1126430/1‑122 (MQ=255)

                                                                                                      tCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTACCCAGCACCAGACTGATGATGAAGAATAACGTTGCCAGCAGCGCCGTCATGCGGGTCATGAAGTTACCAGAACCACTTGAACCAAACAg                                           <  1:1027219/125‑1 (MQ=255)

                                                                                                      tCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTACCCAGCACCAGACTGATGATGAAGAATAACGTTGCCAGCAGCGCCGTCATGCGGGTCATGAAGTTACCAGAACCACTTGAACCAAACAg                                           >  2:1027219/1‑125 (MQ=255)

                                                                                                      tCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTACCCAGCACCAGACTGATGATGAAGAATAACGTTGCCAGCAGCGCCGTCATGCGGGTCATGAAGTTACCAGAACCACTTGAACCAAACAGTGTAGCGGAAGCGcc                            >  2:1595486/1‑140 (MQ=255)

                                                                                                      tCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTACCCAGCACCAGACTGATGATGAAGAATAACGTTGCCAGCAGCGCCGTCATGCGGGTCATGAAGTTACCAGAACCACTTGAACCAAACAGCGTAGCGGAAGCGcc                            >  2:770077/1‑140 (MQ=255)

                                                                                                      tCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTACCCAGCACCAGACTGATGATGAAGAATAACGTTGCCAGCAGCGCCGTCATGCGGGTCATGAAGTTACCAGAACCACTTGAACCAAACAGCGTAGCGGAAGCGcc                            >  2:1418990/1‑140 (MQ=255)

                                                                                                      tCGCTACCTTTATTGGTTTTGTTGCTATTGATTTTACCCAGCACCAGACTGATGATGAAGAATAACGTTGCCAGCAGCGCCGTCATGCGGGTCATGAAGTTACCAGAACCACTTGAACCAAACAGCGTAGCGGAAGCGcc                            <  1:1741762/140‑1 (MQ=255)

                                                                                                            ccTTTATTGGTTTTGTTGCTATTGATTTTACCCAGCACCAGACTGATGATGAAGAATAACGTTGCCAGCAGCGCCGTCATGCGGGTCATGAAGTTACCAGAACCACTTGAACCAAACAGCGTAGCGGAAGCGCCTGCTcc                      >  1:1100196/1‑140 (MQ=255)

                                                                                                              tttATTGGTTTTGTTGCTATTGATTTTACCCAGCACCAGACTGATGATGAAGAATAACGTTGCCAGCAGCGCCGTCATGCGGGTCATGAAGTTACCAGAACCACTTGAACCAAACAGCGTAGCGGAAGCGCCTGCTCCGa                    >  2:947555/1‑140 (MQ=255)

                                                                                                               ttATTGGTTTTGTTGCTATTGATTTTACCCAGCACCAGACTGATGATGAAGAATAACGTTGCCAGCAGCGCCGTCATGCGGGTCATGAAGTTACCAGAACCACTTGAACCAAACAGCGTAGCGGAAGCGCCTGCTCCGaa                   <  1:1301075/140‑1 (MQ=255)

                                                                                                               ttATTGGTTTTGTTGCTATCGATTTTACCCAGCACCAGACTGATGATGTAGAATAACGTTGCCAGCAGCGCCGTCATGCGGGTCATGAAGTTACCAGAACCACTTGAACCAAACAGCGTAGCGGAAGCGCCTGCTCCGaa                   <  2:85813/140‑1 (MQ=255)

                                                                                                                tATTGGTTTTGTTGCTATTGATTTTACCCAGCACCAGACTGATGATGAAGAATAACGTTGCCAGCAGCGCCGTCATGCGGGTCATGAAGTTACCAGAACCACTTGAACCAAACAGCGTAGCGGAAGCGCCTGCTCCGAag                  >  2:1484805/1‑140 (MQ=255)

                                                                                                                 aTTGGTTTTGTTGCTATTGATTTTACCCAGCACCAGACTGATGATGAAGAATAACGTTGCCAGCAGCGCCGTCATGCGGGTCATGAAGTTACCAGAACCACTTGAACCAAACAGCGTAGCGGAAGCGCCTGCTCCGAagg                 >  1:474329/1‑140 (MQ=255)

                                                                                                                 aTTGGTTTTGTTGCTATTGATTTTACCCAGCACCAGACTGATGATGAAGAATAACGTTGCCAGCAGCGCCGTCATGCGGGTCATGAAGTTACCAGAACCACTTGAACCAAACAGCGTAGCGGAAGCGCCTGCTCCGAagg                 >  2:98989/1‑140 (MQ=255)

                                                                                                                 aTTGGTTTTGTTGCTATTGATTTTACCCAGCACCAGACTGATGATGAAGAATAACGTTGCCAGCAGCGCCGTCATGCGGGTCATGAAGTTACCAGAACCACTTGAACCAAACAGCGTAGCGGAAGCGCCTGCTCCGAagg                 >  2:1542711/1‑140 (MQ=255)

                                                                                                                  ttGGTTTTGTTGCTATTGATTTTACCCAGCACCAGACTGATGATGAAGAATAACGTTGCCAGCAGCGCCGTCATGCGGGTCATGAAGTTACCAGAACCACTTGAACCAAACAGCGTAGCGGAAGCGCCTGCTCCGAagga                <  2:1103852/140‑1 (MQ=255)

                                                                                                                   tGGTTTTGTTGCTATTGATTTTACCCAGCACCAGACTGATGATGAAGAATAACGTTGCCAGCAGCGCCGTCATGCGGGTCATGAAGTTACCAGAACCACTTGAACCAAACAGCGTAGCGGAAGCGCCTGCTCCGAaggag               <  2:1958614/140‑1 (MQ=255)

                                                                                                                      ttttGTTGCTATTGATTTTACCCAGCACCAGACTGATGATGAAGAATAACGTTGCCAGCAGCGCCGTCATGCGGGTCATGAAGTTACCAGAACCACTTGAACCAAACAGCGTAGCGGAAGCGCCTGCTCCGAAGGAGGCt            <  1:716534/140‑1 (MQ=255)

                                                                                                                      ttttGTTGCTATTGATTTTACCCAGCACCAGACTGATGATGAAGAATAACGTTGCCAGCAGCGCCGTCATGCGGGTCATGAAGTTACCAGAACCACTTGAACCAAACAGCGTAGCGGAAGCGCCTGCTCCGAAGGAGGCt            >  1:179997/1‑140 (MQ=255)

                                                                                                                       tttGTTGCTATTGATTTTACCCAGCACCAGACTGATGATGAAGAATAACGTTGCCAGCAGCGCCGTCATGCGGGTCATGAAGTTACCAGAACCACTTGAACCAAACAGCGTAGCGGAAgcgc                             <  2:1712333/122‑1 (MQ=255)

                                                                                                                       tttGTTGCTATTGATTTTACCCAGCACCAGACTGATGATGAAGAATAACGTTGCCAGCAGCGCCGTCATGCGGGTCATGAAGTTACCAGAACCACTTGAACCAAACAGCGTAGCGGAAgcgc                             >  1:1712333/1‑122 (MQ=255)

                                                                                                                       tttGTTGCTATTGATTTTACCCAGCACCAGACTGATGATGAAGAATAACGTTGCCAGCAGCGCCGTCATGCGGGTCATGAAGTTACCAGAACCACTTGAACCAAACAGCGTAGCGGAAGCGCCTGCTCCGAAGGAGGCTc           >  2:1901737/1‑140 (MQ=255)

                                                                                                                       tttGTTGCTATTGATTTTACCCAGCACCAGACTGATGATGAAGAATAACGTTGCCAGCAGCGCCGTCATGCGGGTCATGAAGTTACCAGAACCACTTGAACCAAACAGCGTAGCGGAAGCGCCTGCTCCGAAGGAGGCTc           >  2:31528/1‑140 (MQ=255)

                                                                                                                       tttGTTGCTATTGATTTTACCCAGCACCAGACTGATGATGAAGAATAACGTTGCCAGCAGCGCCGTCATGCGGGTCATGAAGTTACCAGAACCACTTGAACCAAACAGCGTAGCGGAAGCGCCTGCTCCGAAGGAGGCTc           >  1:1192730/1‑140 (MQ=255)

                                                                                                                       tttGTTGCTATTGATTTTACCCAGCACCAGACTGATGATGAAGAATAACGTTGCCAGCAGCGCCGTCATGCGGGTCATGAAGTTACCAGAACCACTTGAACCAAACAGCGTAGCGGAAGCGCCTGCTCCGAAGGAGGCTc           >  1:1205638/1‑140 (MQ=255)

                                                                                                                        ttgttgCTATTGATTTTACCCAGCACCAGACTGATGATGAAGAATAACGTTGCCAGCAGCGCCGTCATGCGGGTCATGAAGTTACCAGAACCACTTGAACCAAACAGCGTAGCGGAAGCGCCTGCTCCGAAGGAGGCTcc          >  2:1124671/1‑140 (MQ=255)

                                                                                                                        ttgttgCTATTGATTTTACCCAGCACCAGACTGATGATGAAGAATAACGTTGCCAGCAGCGCCGTCATGCGGGTCATGAAGTTACCAGAACCACTTGAACCAAACAGCGTAGCGGAAGCGCCTGCTCCGAAGGAGGCTcc          >  2:1426249/1‑140 (MQ=255)

                                                                                                                        ttgttgCTATTGATTTTACCCAGCACCAGACTGATGATGAAGAATAACGTTGCCAGCAGCGCCGTCATGCGGGTCATGAAGTTACCAGAACCACTTGAACCAAACAGCGTAGCGGAAGCGCCTGCTCCGAAGGAGGCTcc          <  2:616701/140‑1 (MQ=255)

                                                                                                                              cTATTGATTTTACCCAGCACCAGACTGATGATGAAGAATAACGTTGCCAGCAGCGCCGTCATGCGGGTCATGAAGTTACCAGAACCACTTGAACCAAACAGCGTAGCGGAAGCGCCTGCTCCGAAGGAGGCTCCCATATc    <  2:1720666/140‑1 (MQ=255)

                                                                                                                               tATTGATTTTACCCAGCACCAGACTGATGATGAAGAATAACGTTGCCAGCAGCGCCGTCATGCGGGTCATGAAGTTACCAGAACCACTTGAACCAAACAGCGTAGCGGAAGCGCCTGCTCCGAAGGAGGCTCCCATATCa   <  2:1268369/140‑1 (MQ=255)

                                                                                                                               tATTGATTTTACCCAGCACCAGACTGATGATGAAGAATAACGTTGCCAGCAGCGCCGTCATGCGGGTCATGAAGTTACCAGAACCACTTGAACCAAACAGCGTAGCGGAAGCGCCTGCTCCGAAGGAGGCTCCCATATCa   <  2:687283/140‑1 (MQ=255)

                                                                                                                                aTTGATTTTACCCAGCACCAGACTGATGATGAAGAATAACGTTGCCAGCAGCGCCGTCATGCGGGTCATGAAGTTACCAGAACCACTTGAACCAAACAGCGTAGCGGAAGCGCCTGCTCCGAAGGAGGCTcc          >  2:695765/1‑132 (MQ=255)

                                                                                                                                aTTGATTTTACCCAGCACCAGACTGATGATGAAGAATAACGTTGCCAGCAGCGCCGTCATGCGGGTCATGAAGTTACCAGAACCACTTGAACCAAACAGCGTAGCGGAAGCGCCTGCTCCGAAGGAGGCTcc          <  1:695765/132‑1 (MQ=255)

                                                                                                                                aTTGATTTTACCCAGCACCAGACTGATGATGAAGAATAACGTTGCCAGCAGCGCCGTCATGCGGGTCATGAAGTTACCAGAACCACTTGAACCAAACAGCGTAGCGGAAGCGCCTGCTCCGAAGGAGGCTCCCATATCAg  >  1:1406346/1‑140 (MQ=255)

GGCACGGATACTACTTTTTAGTTCGGGATATCGCTGGTCGGCTTAGCCGGAGCAGCTGGCTGAGTTTGTTCGGTTTTCGCCGGTGCACTCAGATTTTCCCATTCGCTACCTTTATTGGTTTTGTTGCTATTGATGTTACCCAGCACCAGACTGATGATGAAGAATAACGTTGCCAGCAGCGCCGTCATGCGGGTCATGAAGTTACCAGAACCACTTGAACCAAACAGCGTAGCGGAAGCGCCTGCTCCGAAGGAGGCTCCCATATCAG  >  NC_000913/3322156‑3322423

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A