Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A10 F73 I1 R1	34	113.1	3988162	99.3%	3960244	139.1

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,700,153	G→T	noncoding (18/64 nt)	rdlD →	antisense regulatory RNA RdlD

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,700,153	0	G	T	100.0%	366.0 / NA	102	noncoding (18/64 nt)	rdlD	antisense regulatory RNA RdlD
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (61/41); total (61/41)

Only 100 of 104 total aligned reads displayed.

GCAAGAATGCCAGCAATGACCGGAGCCGCTAAATCATGCCAGAAGGCCATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTAGCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAA‑CCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGATTCTACGA  >  NC_000913/3700017‑3700288

gCAAGAATGCCAGCAATGACCGGAGCCGCTAAATCATGCCAGAAGGCCATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATccc                                                                                                                                       >  1:804559/1‑140 (MQ=255)

 cAAGAATGCCAGCAATGACCGGAGCCGCTAAATCATGCCAGAAGGCCATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATcccc                                                                                                                                      <  2:1271129/140‑1 (MQ=255)

  aaGAATGCCAGCAATGACCGGAGCCGCTAAATCATGCCAGAAGGCCATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATccccc                                                                                                                                     >  1:45022/1‑140 (MQ=255)

  aaGAATGCCAGCAATGACCGGAGCCGCTAAATCATGCCAGAAGGCCATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATccccc                                                                                                                                     >  1:401925/1‑140 (MQ=255)

  aaGAATGCCAGCAATGACCGGAGCCGCTAAATCATGCCAGAAGGCCATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATccccc                                                                                                                                     <  2:1681228/140‑1 (MQ=255)

  aaGAATGCCAGCAATGACCGGAGCCGCTAAATCATGCCAGAAGGCCATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATccccc                                                                                                                                     >  2:1718103/1‑140 (MQ=255)

  aaGAATGCCAGCAATGACCGGAGCCGCTAAATCATGCCAGAAGGCCATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATccccc                                                                                                                                     >  2:230169/1‑140 (MQ=255)

  aaGAATGCCAGCAATGACCGGAGCCGCTAAATCATGCCAGAAGGCCATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATccccc                                                                                                                                     <  1:1510437/140‑1 (MQ=255)

  aaGAATGCCAGCAATGACCGGAGCCGCTAAATCATGCCAGAAGGCCATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATccccc                                                                                                                                     >  1:1501906/1‑140 (MQ=255)

   aGAATGCCAGCAATGACCGGAGCCGCTAAATCATGCCAGAAGGCCATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATCCCCCg                                                                                                                                    <  2:1501906/140‑1 (MQ=255)

    gAATGCCAGCAATGACCGGAGCCGCTAAATCATGCCAGAAGGCCATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATCCCCCgt                                                                                                                                   >  2:944984/1‑140 (MQ=255)

     aaTGCCAGCAATGACCGGAGCCGCTAAATCATGCCAGAAGGCCATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATCCCCCgtg                                                                                                                                  >  1:1508309/1‑140 (MQ=255)

     aaTGCCAGCAATGACCGGAGCCGCTAAATCATGCCAGAAGGCCATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATCCCCCgtg                                                                                                                                  <  1:1095550/140‑1 (MQ=255)

       tGCCAGCAATGACCGGAGCCGCTAAATCATGCCAGAAGGCCATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATCCCCCgtggt                                                                                                                                <  2:682526/140‑1 (MQ=255)

        gCCAGCAATGACCGGAGCCGCTAAATCATGCCAGAAGGCCATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATCCCCCgtggtg                                                                                                                               >  1:1608221/1‑140 (MQ=255)

        gCCAGCAATGACCGGAGCCGCTAAATCATGCCAGAAGGCCATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATCCCCCgtggtg                                                                                                                               <  2:1508309/140‑1 (MQ=255)

        gCCAGCAATGACCGGAGCCGCTAAATCATGCCAGAAGGCCATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATCCCCCgtggtg                                                                                                                               <  2:1901412/140‑1 (MQ=255)

            gCAATGACCGGAGCCGCTAAATCATGCCAGAAGGCCATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATCCCCCGTGGtgttgt                                                                                                                           >  1:422354/1‑140 (MQ=255)

             cAATGACCGGAGCCGCTAAATCATGCCAGAAGGCCATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATCCCCCGTGGTGTTGTc                                                                                                                          <  2:1405850/140‑1 (MQ=255)

             cAATGACCGGAGCCGCTAAATCATGCCAGAAGGCCATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATCCCCCGTGGTGTTGTc                                                                                                                          <  2:504804/140‑1 (MQ=255)

             cAATGACCGGAGCCGCTAAATCATGCCAGAAGGCCATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATCCCCCGTGGTGTTGTc                                                                                                                          <  2:804559/140‑1 (MQ=255)

             cAATGACCGGAGCCGCTAAATCATGCCAGAAGGCCATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATCCCCCGTGGTGTTGTc                                                                                                                          <  2:1608221/140‑1 (MQ=255)

               aTGACCGGAGCCGCTAAATCATGCCAGAAGGCCATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATCCCCCGTGGTGTTGTCAg                                                                                                                        >  2:47309/1‑140 (MQ=255)

                  aCCGGAGCCGCTAAATCATGCCAGAAGGCCATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATCCCCCGTGGTGTTGTCAgg                                                                                                                       >  2:1850589/1‑138 (MQ=255)

                  aCCGGAGCCGCTAAATCATGCCAGAAGGCCATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATCCCCCGTGGTGTTGTCAgg                                                                                                                       <  1:1850589/138‑1 (MQ=255)

                  aCCGGAGCCGCTAAATCATGCCAGAAGGCCATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATCCCCCGTGGTGTTGTCAGGTg                                                                                                                     <  1:976695/140‑1 (MQ=255)

                  aCCGGAGCCGCTAAATCATGCCAGAAGGCCATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATCCCCCGTGGTGTTGTCAGGTg                                                                                                                     <  1:1948728/140‑1 (MQ=255)

                  aCCGGAGCCGCTAAATCATGCCAGAAGGCCATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATCCCCCGTGGTGTTGTCAGGTg                                                                                                                     >  1:342322/1‑140 (MQ=255)

                    cGGAGCCGCTAAATCATGCCAGAAGGCCATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATCCCCCGTGGTGTTGTCAGGTGCa                                                                                                                   <  1:313308/140‑1 (MQ=255)

                       aGCCGCTAAATCATGCCAGAAGGCCATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATCCCCCGTGGTGTTGTCAGGTGCATAc                                                                                                                >  1:597172/1‑140 (MQ=255)

                         ccGCTAAATCATGCCAGAAGGCCATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATCCCCCGTGGTGTTGTCAGGTGCATACCt                                                                                                              <  2:1424390/140‑1 (MQ=255)

                            cTAAATCATGCCAGAAGGCCATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATCCCCCGTGGTGTTGTCAGGTGCATACCTGCa                                                                                                           <  1:47309/140‑1 (MQ=255)

                                         gAAGGCCATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGtt                                                                                              >  1:44538/1‑140 (MQ=255)

                                          aaGGCCATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGttt                                                                                             >  1:746817/1‑140 (MQ=255)

                                             gCCATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTtct                                                                                          <  2:422354/140‑1 (MQ=255)

                                             gCCATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTtct                                                                                          <  2:597172/140‑1 (MQ=255)

                                               cATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATCCCCCGTGTTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTtctct                                                                                        >  2:579549/1‑140 (MQ=255)

                                               cATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTtctct                                                                                        >  1:696439/1‑140 (MQ=255)

                                               cATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTtctct                                                                                        <  1:1718103/140‑1 (MQ=255)

                                               cATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTtctct                                                                                        >  1:1016926/1‑140 (MQ=255)

                                                     cAGCTCTGCGAACGCCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATCCCCCGTGGTGTTATCAGGTGCATTCCTGCAACGTGCGGGGGTTTTCTCTCACCAg                                                                                  <  2:1348650/140‑1 (MQ=37)

                                                         tctGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAA‑c                                                                             <  2:45022/140‑1 (MQ=255)

                                                            gCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAA‑CCaa                                                                          >  2:1393410/1‑140 (MQ=255)

                                                             cGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAA‑CCAAt                                                                         >  1:1011305/1‑140 (MQ=255)

                                                              gAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAA‑CCAATg                                                                        <  2:746817/140‑1 (MQ=255)

                                                                 cGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAA‑CCAATGcca                                                                     >  1:1535194/1‑140 (MQ=255)

                                                                  gTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAA‑CCAATGccac                                                                    >  1:1399489/1‑140 (MQ=255)

                                                                  gTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAA‑CCAATGccac                                                                    >  1:281819/1‑140 (MQ=255)

                                                                   tCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAA‑CCAATGccacc                                                                   <  1:1933452/140‑1 (MQ=255)

                                                                             gccTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAA‑CCAATGCCACCAGGGATAAAg                                                         >  1:1992149/1‑140 (MQ=255)

                                                                              ccTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTTTCTCCAGCAA‑CCAATGCCACCAGGGATAAAGc                                                        >  1:1780398/1‑140 (MQ=255)

                                                                              ccTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAA‑CCAATGCCACCAGGGATaaa                                                          <  1:26789/138‑1 (MQ=255)

                                                                              ccTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAA‑CCAATGCCACCAGGGATaaa                                                          >  2:26789/1‑138 (MQ=255)

                                                                              ccTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAA‑CCAATGCCACCAGGGATAAAGc                                                        >  2:1991664/1‑140 (MQ=255)

                                                                              ccTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAA‑CCAATGCCACCAGGGATAAAGc                                                        >  1:87545/1‑140 (MQ=255)

                                                                              ccTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAA‑CCAATGCCACCAGGGATAAAGc                                                        >  1:1019575/1‑140 (MQ=255)

                                                                                tgtgTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAA‑CCAATGcc                                                                      >  2:1608322/1‑124 (MQ=255)

                                                                                tgtgTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAA‑CCAATGcc                                                                      <  1:1608322/124‑1 (MQ=255)

                                                                                tgtgTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAA‑CCAATGCCACCAGGGATAAAGccc                                                      <  2:87545/140‑1 (MQ=255)

                                                                                tgtgTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAA‑CCAATGCCACCAGGGATAAAGccc                                                      <  1:260234/140‑1 (MQ=255)

                                                                                tgtgTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAA‑CCAATGCCACCAGGGATAAAGccc                                                      <  1:1726058/140‑1 (MQ=255)

                                                                                       tAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAA‑CCAATGCCACCAGGGATAAAGCCCCCGCAAc                                               >  1:1799676/1‑140 (MQ=255)

                                                                                            aCAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAA‑CCAATGCCACCAGGGATAAAGCCCCCGCAATATTgc                                          >  1:1632270/1‑140 (MQ=255)

                                                                                            aCAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAA‑CCAATGCCACCAGGGATAAAGCCCCCGCAACATTgc                                          >  2:666482/1‑140 (MQ=255)

                                                                                              aaCGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAACCCAATGCCACCAGGGATAAAGCCCCCGCAACATTgcg                                         >  2:1216651/1‑140 (MQ=255)

                                                                                              aaCGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAA‑CCAATGCCACCAGGGATAAAGCCCCCGCAACATTgcgc                                        >  1:1433397/1‑140 (MQ=255)

                                                                                               aCGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAA‑CCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGcc                                       <  2:44538/140‑1 (MQ=255)

                                                                                                 gTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAA‑CCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTc                                     >  2:395983/1‑140 (MQ=255)

                                                                                                 gTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAA‑CCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTc                                     >  2:1991636/1‑140 (MQ=255)

                                                                                                 gTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAA‑CCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTc                                     >  2:1936857/1‑140 (MQ=255)

                                                                                                   ttCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTATCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAA‑CCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCAc                                   >  1:1139619/1‑140 (MQ=255)

                                                                                                     cgcgGCTATTCTTGAGTGGTCTAGAGTCAAGATTATCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAA‑CCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCg                                 >  2:1119321/1‑140 (MQ=255)

                                                                                                       cgGCTATTCTTGAGTGGTCTAGAGTCAAGATTATCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAA‑CCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGa                               >  2:1607158/1‑140 (MQ=255)

                                                                                                        ggCTATTCTTGAGTGGTCTAGAGTCAAGATTATCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAA‑CCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGaa                              <  2:815589/140‑1 (MQ=255)

                                                                                                              tCTTGAGTGGTCTAGAGTCAAGATTATCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAA‑CCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTc                        <  1:1668297/140‑1 (MQ=255)

                                                                                                                    gTGGTCTAGAGTCAAGATTATCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAA‑CCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCtt                  <  1:562901/140‑1 (MQ=255)

                                                                                                                       gTCTAGAGTCAAGATTATCCCCCGTGGTGTTGTCGGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAA‑CCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGcc               >  2:484040/1‑140 (MQ=255)

                                                                                                                       gTCTAGAGTCAAGATTATCCCCCGTGGTGTTGTCAGGTGTATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAA‑CCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGcc               <  1:181743/140‑1 (MQ=255)

                                                                                                                       gTCTAGAGTCAAGATTATCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAA‑CCAATGCCACCAGGGATAAAGCCCCCGCACCATTGCGCCTCACCGGAACCTTTCCGGCTTGcc               >  2:1215352/1‑140 (MQ=255)

                                                                                                                       gTCTAGAGTCAAGATTATCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAA‑CCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGcc               >  1:1015491/1‑140 (MQ=255)

                                                                                                                       gTCTAGAGTCAAGATTATCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAA‑CCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGcc               >  1:363900/1‑140 (MQ=255)

                                                                                                                       gTCTAGAGTCAAGATTATCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAA‑CCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGcc               >  2:1072318/1‑140 (MQ=255)

                                                                                                                       gTCTAGAGTCAAGATTATCCCCCGTGGTGTTGTCAGGTGCATACCTACAACGTGCGGGGGTTTTCTCTCTCCAGCAA‑CCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGcc               >  1:1101194/1‑140 (MQ=255)

                                                                                                                        tCTAGAGTCAAGATTATCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAA‑CCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCg              <  1:1072318/140‑1 (MQ=255)

                                                                                                                         cTAGAGTCAAGATTATCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAA‑CCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGc             <  1:944984/140‑1 (MQ=255)

                                                                                                                          tAGAGTCAAGATTATCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAA‑CCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCt            <  1:161601/140‑1 (MQ=255)

                                                                                                                          tAGAGTCAAGATTATCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAA‑CCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCt            <  1:666482/140‑1 (MQ=255)

                                                                                                                          tAGAGTCAAGATTATCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAA‑CCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCt            <  1:1119321/140‑1 (MQ=255)

                                                                                                                                 aaGATTATCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAA‑CCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGATTCTa     >  1:331424/1‑140 (MQ=255)

                                                                                                                                 aaGATTATCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAA‑CCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGATTCTa     >  2:875456/1‑140 (MQ=255)

                                                                                                                                 aaGATTATCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAA‑CCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGATTCTa     >  2:1348482/1‑140 (MQ=255)

                                                                                                                                 aaGATTATCCCCCGTGGTGTGGTCAGGTGCATAACTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAA‑CCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGATTCtc     >  2:1707981/1‑139 (MQ=255)

                                                                                                                                  aGATTATCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAA‑CCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGATTCTAc    >  2:1057792/1‑140 (MQ=255)

                                                                                                                                  aGATTATCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAA‑CCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGATTCTAc    >  1:1319536/1‑140 (MQ=255)

                                                                                                                                  aGATTATCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAA‑CCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGATTCTAc    >  2:1045940/1‑140 (MQ=255)

                                                                                                                                  aGATTATCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAA‑CCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGATTCTAc    >  1:565030/1‑140 (MQ=255)

                                                                                                                                  aGATTATCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAA‑CCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGATTCTAc    >  2:1619190/1‑140 (MQ=255)

                                                                                                                                  aGATTATCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAA‑CCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGATTCTAc    >  2:1649337/1‑140 (MQ=255)

                                                                                                                                    aTTATCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAA‑CCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGATTCTACGa  <  2:696439/140‑1 (MQ=255)

                                                                                                                                    aTTATCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAA‑CCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGATTCTACGa  <  1:1747307/140‑1 (MQ=255)

GCAAGAATGCCAGCAATGACCGGAGCCGCTAAATCATGCCAGAAGGCCATGCCCAGCTCTGCGAACGTCATATAGCCGCCTGTGTTGTAATGACAACGTTTCGCGGCTATTCTTGAGTGGTCTAGAGTCAAGATTAGCCCCCGTGGTGTTGTCAGGTGCATACCTGCAACGTGCGGGGGTTTTCTCTCTCCAGCAA‑CCAATGCCACCAGGGATAAAGCCCCCGCAACATTGCGCCTCACCGGAACCTTTCCGGCTTGCCGCTGATTCTACGA  >  NC_000913/3700017‑3700288

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A