Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A18 F73 I1 R1 22 83.4 2868466 99.3% 2848386 139.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,006,862 C→A P333P (CCC→CCA)  recQ → ATP‑dependent DNA helicase RecQ

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,006,8620CA98.8% 291.5 / ‑3.3 83P333P (CCC→CCA) recQATP‑dependent DNA helicase RecQ
Reads supporting (aligned to +/- strand):  ref base C (1/0);  new base A (47/35);  total (48/35)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.76e-01

ATTGTGGTGGCGACGGTGGCGTTCGGCATGGGCATCAATAAACCAAACGTTCGCTTCGTGGTCCACTTTGATATTCCGCGCAATATCGAATCCTATTATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCCGCGGAAGCGATGCTGTTTTACGATCCGGCTGATATGGCGTGGCTGCGCCGTTGTCTGGAAGAGAAGCCGCAGGGGCAGTTGCAGGATATCGAGCGCCACAAACTCAATGCGATGGGCGCGTTTGCCGAAGCGCAA  >  NC_000913/4006728‑4006997
                                                                                                                                      |                                                                                                                                       
aTTGTGGTGGCGACGGTGGCGTTCGGCATGGGCATCAATAAACCAAACGTTCGCTTCGTGGTCCACTTTGATATTCCGCGCAATATCGAATCCTATTATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGa                                                                                                                                    <  1:1328887/140‑1 (MQ=255)
  tgtgGTGGCGACGGTGGCGTTCGGCATGGGCATCAATAAACCAAACGTTCGCTTCGTGGTCCACTTTGATATTCCGCGCAATATCGAATCCTATTATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAg                                                                                                                                  >  1:650873/1‑140 (MQ=255)
  tgtgGTGGCGACGGTGGCGTTCGGCATGGGCATCAATAAACCAAACGTTCGCTTCGTGGTCCACTTTGATATTCCGCGCAATATCGAATCCTATTATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAg                                                                                                                                  >  1:1187607/1‑140 (MQ=255)
    tggtggCGACGGTGGCGTTCGGCATGGGCATCAATAAACCAAACGTTCGCTTCGTGGTCCACTTTGATATTCCGCGCAATATCGAATCCTATTATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCg                                                                                                                                >  2:1428396/1‑140 (MQ=255)
       tggCGACGGTGGCGTTCGGCATGGGCATCAATAAACCAAACGTTCGCTTCGTGGTCCACTTTGATATTCCGCGCAATATCGAATCCTATTATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATg                                                                                                                             <  2:75375/140‑1 (MQ=255)
       tggCGACGGTGGCGTTCGGCATGGGCATCAATAAACCAAACGTTCGCTTCGTGGTCCACTTTGATATTCCGCGCAATATCGAATCCTATTATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATg                                                                                                                             <  1:672683/140‑1 (MQ=255)
       tggCGACGGTGGCGTTCGGCATGGGCATCAATAAACCAAACGTTCGCTTCGTGGTCCACTTTGATATTCCGCGCAATATCGAATCCTATTATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATg                                                                                                                             >  2:1432557/1‑140 (MQ=255)
       tggCGACGGTGGCGTTCGGCATGGGCATCAATAAACCAAACGTTCGCTTCGTGGTCCACTTTGATATTCCGCGCAATATCGAATCCTATTATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATg                                                                                                                             <  1:85335/140‑1 (MQ=255)
       tggCGACGGTGGCGTTCGGCATGGGCATCAATAAACCAAACGTTCGCTTCGTGGTCCACTTTGATATTCCGCGCAATATCGAATCCTATTATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATg                                                                                                                             <  1:1421355/140‑1 (MQ=255)
       tggCGACGGTGGCGTTCGGCATGGGCATCAATAAACCAAACGTTCGCTTCGTGGTCCACTTTGATATTCCGCGCAATATCGAATCCTATTATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATg                                                                                                                             <  2:1061887/140‑1 (MQ=255)
       tggCGACGGTGGCGTTCGGCATGGGCATCAATAAACCAAACGTTCGCTTCGTGGTCCACTTTGATATTCCGCGCAATATCGAATCCTATTATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATg                                                                                                                             <  1:1005169/140‑1 (MQ=255)
         gCGACGGTGGCGTTCGGCATGGGCATCAATAAACCAAACGTTCGCTTCGTGGTCCACTTTGATATTCCGCGCAATATCGAATCCTATTATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATGCt                                                                                                                           <  1:865808/140‑1 (MQ=255)
              ggTGGCGTTCGGCATGGGCATCAATAAACCAAACGTTCGCTTCGTGGTCCACTTTGATATTCCGCGCAATATCGAATCCTATTATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATGCTGtttt                                                                                                                      <  1:447736/140‑1 (MQ=255)
                   cGTTCGGCATGGGCATCAATAAACCAAACGTTCGCTTCGTGGTCCACTTTGATATTCCGCGCAATATCGAATCCTATTATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATGCTGTTTTACGAt                                                                                                                 <  1:1296525/140‑1 (MQ=255)
                   cGTTCGGCATGGGCATCAATAAACCAAACGTTCGCTTCGTGGTCCACTTTGATATTCCGCGCAATATCGAATCCTATTATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATGCTGTTTTACGAt                                                                                                                 <  2:1364435/140‑1 (MQ=255)
                   cGTTCGGCATGGGCATCAATAAACCAAACGTTCGCTTCGTGGTCCACTTTGATATTCCGCGCAATATCGAATCCTATTATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATGCTGTTTTACGAt                                                                                                                 <  1:1158147/140‑1 (MQ=255)
                     ttCTGCATGGGCCTCAATAATCCAAACGTTCGCTTCGTGGTCCACTTTGATATTCCGCGCAATATCGAATCCTATTATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATGCTGTTTTACGATcc                                                                                                               <  2:1394778/140‑1 (MQ=255)
                     ttCGGCATGGGCATCAATAAACCAAACGTTCGCTTCGTGGTCCACTTTGATATTCCGCGCAATATCGAATCCTATTATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATGCTGTTTTACGATcc                                                                                                               <  2:763524/140‑1 (MQ=255)
                      tCGGCATGGGCATCAATAAACCAAACGTTCGCTTCGTGGTCCACTTTGATATTCCGCGCAATATCGAATCCTATTATCAGGAAACCGGACGCGCCGGGCGTGAT‑GCCTGCCAGCGGAAGCGATGCTGTTTTACGATCCgg                                                                                                             <  1:157796/140‑1 (MQ=255)
                       cGGCATGGGCATCAATAAACCAAACGTTCGTTTCGTGGTCCACTTTGATATTCCGCGCAATATCGAATCCTATTATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCCGTGGAAGCGATGCTGTTTTACGATCCgg                                                                                                             <  2:1380579/140‑1 (MQ=255)
                       cGGCATGGGCATCAATAAACCAAACGTTCGCTTCGTGGTCCACTTTGATATTCCGCGCAATATCGAATCCTATTATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATGCTGTTTTACGATCCgg                                                                                                             <  2:611684/140‑1 (MQ=255)
                       cGGCATGGGCATCAATAAACCAAACGTTCGCTTCGTGGTCCACTTTGATATTCCGCGCAATATCGAATCCTATTATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATGCTGTTTTACGATCCgg                                                                                                             <  2:794923/140‑1 (MQ=255)
                           aTGGGCATCAATAAACCAAACGTTCGCTTCGTGGTCCACTTTGATATTCCGCGCAATATCGAATCCTATTATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATGCTGTTTTACGATCCGGCTGa                                                                                                         <  2:149146/140‑1 (MQ=255)
                           aTGGGCATCAATAAACCAAACGTTCGCTTCGTGGTCCACTTTGATATTCCGCGCAATATCGAATCCTATTATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATGCTGTTTTACGATCCGGCTGa                                                                                                         <  1:1218895/140‑1 (MQ=255)
                             gggCATCAATAAACCAAACGTTCGCTTCGTGGTCCACTTTGATATTCCGCGCAATATCGAATCCTATTATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATGCTGTTTTACGATCCGGCTGata                                                                                                       >  1:1044778/1‑140 (MQ=255)
                                        aaCCAAACGTTCGCTTCGTGGTCCACTTTGATATTCCGCGCAATATCGAATCCTATTATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATGCTGTTTTACGATCCGGCTGATATGGCGTGGCTg                                                                                            >  2:1012785/1‑140 (MQ=255)
                                         aCCAAACGTTCGCTTCGTGGTCCACTTTGATATTCCGCGCAATATCGAATCCTATTATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATGCTGTTTTACGATCCGGCTGATATGGCGTGGCTgc                                                                                           >  2:63715/1‑140 (MQ=255)
                                         aCCAAACGTTCGCTTCGTGGTCCACTTTGATATTCCGCGCAATATCGAATCCTATTATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATGCTGTTTTACGATCCGGCTGATATGGCGTGGCTgc                                                                                           >  2:928360/1‑140 (MQ=255)
                                          ccAAACGTTCGCTTCGTGGTCCACTTTGATATTCCGCGCAATATCGAATCCTATTATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATGCTGTTTTACGATCCGGCTGATATGGCGTGGCTgcg                                                                                          <  2:626432/140‑1 (MQ=255)
                                             aaCGTTCGCTTCGTGGTCCACTTTGATATTCCGCGCAATATCGAATCCTATTATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATGCTGTTTTACGATCCGGCTGATATGGCGTGGCTGCGCCg                                                                                       <  2:1044778/140‑1 (MQ=255)
                                             aaCGTTCGCTTCGTGGTCCACTTTGATATTCCGCGCAATATCGAATCCTATTATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATGCTGTTTTACGATCCGGCTGATATGGCGTGGCTGCGCCg                                                                                       <  2:1316261/140‑1 (MQ=255)
                                             aaCGTTCGCTTCGTGGTCCACTTTGATATTCCGCGCAATATCGAATCCTATTATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATGCTGTTTTACGATCCGGCTGATATGGCGTGGCTGCGCCg                                                                                       >  1:57332/1‑140 (MQ=255)
                                             aaCGTTCGCTTCGTGGTCCACTTTGATATTCCGCGCAATATCGAATCCTATTATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATGCTGTTTTACGATCCGGCTGATATGGCGTGGCTGCGCCg                                                                                       <  1:1432557/140‑1 (MQ=255)
                                              aCGTTCGCTTCGTGGTCCACTTTGATATTCCGCGCAATATCGAATCCTATTATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATGCTGTTTTACGATCCGGCTGATATGGCGTGGCTGCGCCGt                                                                                      >  1:1358985/1‑140 (MQ=255)
                                                gTTCGCTTCGTGGTCCACTTTGATATTCCGCGCAATATCGAATCCTATTATCAGGAAACCGAACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATGCTGTTTTACGATCCGGCTGATATGGCGTggccgggccgctt                                                                                    >  2:1016331/1‑137 (MQ=255)
                                                 ttCGCTTCGTGGTCCACTTTGATATTCCGCGCAATATCGAATCCTATTATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATGCTGTTTTACGATCCGGCTGATATGGCGTGGCTGCGCCGTTGt                                                                                   <  1:61393/140‑1 (MQ=255)
                                                   cGCTTCGTGGTCCACTTTGATATTCCGCGCAATATCGAATCCTATTATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATGCTGTTTTACGATCCGGCTGATATGGCGTGGCTGCGCCGTTGTCt                                                                                 <  1:928360/140‑1 (MQ=255)
                                                    gCTTCGTGGTCCACTTTGATATTCCGCGCAATATCGAATCCTATTATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATGCTGTTTTACGATCCGGCTGATATGGCGTGGCTGCGCCGTTGTCTg                                                                                >  2:765236/1‑140 (MQ=255)
                                                          tGGTCCACTTTGATATTCCGCGCAATATCGAATCCTATTATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATGCTGTTTTACGATCCGGCTGATATGGCGTGGCTGCGCCGTTGTCTGGAagag                                                                          >  1:1117194/1‑140 (MQ=255)
                                                                  tttGATATTCCGCGCAATATCGAATCCTATTATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATGCTGTTTTACGATCCGGCTGATATGGCGTGGCTGCGCCGTTGTCTGGAAGAGAAGCCGCa                                                                  <  1:765236/140‑1 (MQ=255)
                                                                      atatTCCGCGCAATATCGAATCCTATTATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATGCTGTTTTACGATCCGGCTGATATGGCGTGGCTGCGCCGTTGTCTGGAAGAGAAGCCGCAgggg                                                              <  2:1240359/140‑1 (MQ=255)
                                                                      atatTCCGCGCAATATCGAATCCTATTATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATGCTGTTTTACGATCCGGCTGATATGGCGTGGCTGCGCCGTTGTCTGGAAGAGAAGCCGCAgggg                                                              >  2:104458/1‑140 (MQ=255)
                                                                      atatTCCGCGCAATATCGAATCCTATTATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATGCTGTTTTACGATCCGGCTGATATGGCGTGGCTGCGCCGTTGTCTGGAAGAGAAGCCGCAgggg                                                              <  2:1017806/140‑1 (MQ=255)
                                                                      atatTCCGCGCAATATCGAATCCTATTATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATGCTGTTTTACGATCCGGCTGATATGGCGTGGCTGCGCCGTTGTCTGGAAGAGAAGCCGCAgggg                                                              <  2:259467/140‑1 (MQ=255)
                                                                      atatTCCGCGCAATATCGAATCCTATTATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATGCTATTTTACGATCCGGCTGATATGGCGTGGCTGCGCCGTTGTCTGGAAGAGAAGCCGCAgggg                                                              >  2:1099180/1‑140 (MQ=255)
                                                                       tatTCCGCGCAATATCGAATCCTATTATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATGCTGTTTTACGATCCGGCTGATATGGCGTGGCTGCGCCGTTGTCTGGAAGAGAAGCCGCAGGGGc                                                             >  1:956716/1‑140 (MQ=255)
                                                                         ttCCGCGCAATATCGAATCCTATTATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATGCTGTTTTACGATCCGGCTGATATGGCGTGGCTGCGCCGTTGTCTGGAAGAGAAGCCGCAGGGGCAg                                                           <  2:650873/140‑1 (MQ=255)
                                                                           ccGCGCAATATCGAATCCTATTATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATGCTGTTTTACGATCCGGCTGATATGGCGTGGCTGCGCCGTTGTCTGGAAGAGAAGCCGCAGGGGCAGtt                                                         <  1:566760/140‑1 (MQ=255)
                                                                            cgcgCAATATCGAATCCTATTATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATGCTGTTTTACGATCCGGCTGATATGGCGTGGCTGCGCCGTTGTCTGGAAGAGAAGCCGCAGGGGCAGTTg                                                        >  1:502754/1‑140 (MQ=255)
                                                                            cgcgCAATATCGAATCCTATTATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATGCTGTTTTACGATCCGGCTGATATGGCGTGGCTGCGCCGTTGTCTGGAAGAGAAGCCGCAGGGGCAGTTg                                                        >  1:94474/1‑140 (MQ=255)
                                                                              cgcAATATCGAATCCTATTATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCCGCGGAAGCGATGCTGTTTTACGATCCGGCTGATATGGCGTGGCTGCGCCGTTGTCTGGAAGAGAAGCCGCAGGGGCAGTTGCa                                                      >  1:1292631/1‑140 (MQ=255)
                                                                              cgcAATATCGAATCCTATTATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATGCTGTTTTACGATCCGGCTGATATGGCGTGGCTGCGCCGTTGTCTGGGAGAGAAGCCGCAGGGGCAGTTGCa                                                      >  2:666629/1‑140 (MQ=255)
                                                                              cgcAATATCGAATCCTATTATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATGCTGTTTTACGATCCGGCTGATATGGCGTGGCTGCGCCGTTGTCTGGAAGAGAAGCCGCAGGGGCAGTTGCa                                                      >  1:1013306/1‑140 (MQ=255)
                                                                              cgcAATATCGAATCCTATTATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATGCTGTTTTACGATCCGGCTGATATGGCGTGGCTGCGCCGTTGTCTGGAAGAGAAGCCGCAGGGGCAGTTGCa                                                      >  2:611023/1‑140 (MQ=255)
                                                                              cgcAATATCGAATCCTATTATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATGCTGTTTTACGATCCGGCTGATATGGCGTGGCTGCGCCGTTGTCTGGAAGAGAAGCCGCAGGGGCAGTTGCa                                                      >  1:1103583/1‑140 (MQ=255)
                                                                              cgcAATATCGAATCCTATTATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATGCTGTTTTACGATCCGGCTGATATGGCGTGGCTGCGCCGTTGTCTGGAAGAGAAGCCGCAGGGGCAGTTGCa                                                      >  2:1161686/1‑140 (MQ=255)
                                                                              cgcAATATCGAATCCTATTATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATGCTGTTTTACGATCCGGCTGATATGGCGTGGCTGCGCCGTTGTCTGGAAGAGAAGCCGCAGGGGCAGTTGCa                                                      >  2:1086206/1‑140 (MQ=255)
                                                                              cgcAATATCGAATCCTATTATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATGCTGTTTTACGATCCGGCTGATATGGCGTGGCTGCGCCGTTGTCTGGAAGAGAAGCCGCAGGGGCAGTTGCa                                                      >  1:962509/1‑140 (MQ=255)
                                                                              cgcAATATCGAATCCTATTATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATGCTGTTTTACGATCCGGCTGATATGGCGTGGCTGCGCCGTTGTCTGGAAGAGAAGCCGCAGGGGCAGTTGCa                                                      >  1:669231/1‑140 (MQ=255)
                                                                              cgcAATATCGAATCCTATTATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATGCTGTTTTACGATCCGGCTGATATGGCGTGGCTGCGCCGTTGTCTGGAAGAGAAGCCGCAGGGACAGTTGCa                                                      >  1:746659/1‑140 (MQ=255)
                                                                              cgcAATATCGAATCCTATTATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAACGATGCTGTTTTACGATCCGGCTGTTATGGCGTGGGAGCCCCGCTATCTGGTAGAGAAGGCGCAGGGGCAGTTGCa                                                      >  2:1240717/1‑140 (MQ=255)
                                                                                cAATATCGAATCCTATTATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATGCTGTTTTACGATCCGGCTGATATGGCGTGGCTGCGCCGCTGTCTGGAAGAGAAGCCGCAGGGGCGGTTGGAgg                                                    >  2:882976/1‑140 (MQ=255)
                                                                                   tatCGAATCCTATTATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATGCTGTTTTACGATCCGGCTGATATGGCGTGGCTGCGCCGTTGTCTGGAAGAGAAGCCGCAGGGGCAGTTGCAGGata                                                 >  2:942604/1‑140 (MQ=255)
                                                                                        aaTCCTATTATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATGCTGTTTTACGATCCGGCTGATATGGCGTGGCTGCGCCGTTGTCTGGAAGAGAAGCCGCAGGGGCAGTTGCAGGATATCGAg                                            <  2:962509/140‑1 (MQ=255)
                                                                                        aaTCCTATTATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATGCTGTTTTACGATCCGGCTGATATGGCGTGGCTGCGCCGTTGTCTGGAAGAGAAACCGCAGGGGCAGTTGGAGGATATCggg                                            >  2:162311/1‑138 (MQ=255)
                                                                                         aTCCTATTATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATGCTGTTTTACGATCCGGCTGATATGGCGTGGCTGCGCCGTTGTCTGGAAGAGAAGCCGCAGGGGCAGTTGCAGGATATCGAgc                                           <  1:1428396/140‑1 (MQ=255)
                                                                                             tattatCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATGCTGTTTTACGATCCGGCTGATATGGCGTGGCTGCGCCGTTGTCTGGAAGAGAAGCCGCAGGGGCAGTTGCAGGATATCGAGCGccc                                       >  2:90432/1‑139 (MQ=255)
                                                                                             tattatCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATGCTGTTTTACGATCCGGCTGATATGGCGTGGCTGCGCCGTTGTCTGGAAGAGAAGCCGCAGGGGCAGTTGCAGGATATCGAGCGCca                                       >  1:850259/1‑140 (MQ=255)
                                                                                             tattatCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATGCTGTTTTACGATCCGGCTGATATGGCGTGGCTGCGCCGTTGTCTGGAAGAGAAGCCGCAGGGGCAGTTGCAGGATATCGAGCGCca                                       >  1:961387/1‑140 (MQ=255)
                                                                                             tattatCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATGCTGTTTTACGATCCGGCTGATATGGCGTGGCTGCGCCGTTGTCTGGAAGAGAAGCCGCAGGGGCAGGTGCAGGATATCGAGCGccc                                       >  2:680709/1‑139 (MQ=255)
                                                                                               ttatCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATGCTGTTTTACGATCCGGCTGATATGGCGTGGCTGCGCCGTTGTCTGGAAGAGAAGCCGCAGGGGCAGTTGCAGGATATCGAGCGCcaca                                     >  1:417294/1‑140 (MQ=255)
                                                                                               ttatCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATGCTGTTTTACGATCCGGCTGATATGGCGTGGCTGCGCCGTTGTCTGGAAGAGAAGCCGCAGGGGCAGTTGCAGGATATCGAGCGCcaca                                     >  1:687951/1‑140 (MQ=255)
                                                                                                      gAAACCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATGCTGTTTTACGATCCGGCTGATATGGCGTGGCTGCGCCGTTGTCTGGAAGAGAAGCCGCAGGGGCAGTTGCAGGATATCGAGCGCCACAAACTCaa                              >  2:971639/1‑140 (MQ=255)
                                                                                                       aaaCCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATGCTGTTTTACGATCCGGCTGATATGGCGTGGCTGCGCCGTTGTCTGGAAGAGAAGCCGCAGGGGCAGTTGCAGGATATCGAGCGCCACAAACTCAAt                             >  1:252433/1‑140 (MQ=255)
                                                                                                       aaaCCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATGCTGTTTTACGATCCGGCTGATATGGCGTGGCTGCGCCGCTGCGTGGAAGAGAAGGGCCAGGGGCAGCTGCAGGGTATCGAGCGCCCCAAACCCAAt                             >  2:1243093/1‑140 (MQ=255)
                                                                                                         aCCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATGCTGTTTTACGATCCGGCTGATATGGCGTGGCTGCGCCGTTGTCTGGAAGAGAAGCCGCAGGGGCAGTTGCAGGATATCGAGCGCCACAAACTCAATGc                           >  1:287628/1‑140 (MQ=255)
                                                                                                         aCCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATGCTGTTTTACGATCCGGCTGATATGGCGTGGCTGCGCCGTTGTCTGGAAGAGAAGCCGCAGGGGCAGTTGCAGGATATCGAGCGCCACAAACTCAATGc                           >  1:1158750/1‑140 (MQ=255)
                                                                                                         aCCGGACGCGCCGGGCGTGATGGCCTGCCAGCGGAAGCGATGCTGTTTTACGATCCGGCTGATATGGCGTGGCTGCGCCGTTGTCTGGAAGAGAAGCCGCAGGGGCAGTTGCAGGATATCGAGCGCCACAAACTCAATGc                           >  2:194531/1‑140 (MQ=255)
                                                                                                         aCCGGACGCGCCGGGCGTGATGACCTGCCAGCGGAAGCGATGCTGTTTTACGATCCGGCTGATATGGCGTGGCTGCGCCGGTGTTTGGAAGAGAAGCCGCAGGGGGAGTTTGCGGGTATCGAGCCACACAAACTCAATGc                           >  2:289414/1‑140 (MQ=255)
                                                                                                               cgcgCCGGGCGTGATGGCCTGCCAGCGGAAGCGATGCTGTTTTACGATCCGGCTGATATGGCGTGGCTGCGCCGTTGTCTGGAAGAGAAGCCGCAGGGGCAGTTGCAGGATATCGAGCGCCACAAACTCAATGCGATggg                     >  1:1016286/1‑140 (MQ=255)
                                                                                                                  gcCGGGCGTGATGGCCTGCCAGCGGAAGCGATGCTGTTTTACGATCCGGCTGATATGGCGTGGCTGCGCCGTTGTCTGGAAGAGAAGCCGCAGGGGCAGTTGCAGGATATCGAGCGCCACAAACTCAATGCGATGGgcgc                  >  1:263178/1‑140 (MQ=255)
                                                                                                                        cGTGATGGCCTGCCAGCGGAAGCGATGCTGTTTTACGATCCGGCTGATATGGCGTGGCTGCGCCGTTGTCTGGAAGAGAAGCCGCAGGGGCAGTTGCAGGATATCGAGCGCCACAAACTCAATGCGATGGGCGCGTTTGc            <  1:1240717/140‑1 (MQ=255)
                                                                                                                            aTGGCCTGCCAGCGGAAGCGATGCTGTTTTATGATCCGGCTGATATGGCGTGGCTGCGCCGTTGTCT‑GAAGAGAAGCCGCAGGGGCAGTTGCAGGATATCGAGCGCCACAAACTCAATGCGATGGGCGCGTTTGCCGAAg       >  2:984009/1‑140 (MQ=255)
                                                                                                                                 cTGCCAGCGGAAGCGATGCTGTTTTACGATCCGGCTGATATGGCGTGGCTGCGCCGTTGTCTGGAAGAGAAGCCGCAGGGGCAGTTGCAGGATATCGAGCGCCACAAACTCAATGCGATGGGCGCGTTTGCCGAAGCGCa   >  1:383397/1‑140 (MQ=255)
                                                                                                                                  tGCCAGCGGAAGCGATGCTGTTTTACGATCCGGCTGATATGGCGTGGCTGCGCCGTTGTCTGGAAGAGAAGCCGCAGGGGCAGTTGCAGGATATCGAGCGCCACAAACTCAATGCGATGGGCGCGTTTGCCGAAGCGCaa  <  2:1158750/140‑1 (MQ=255)
                                                                                                                                      |                                                                                                                                       
ATTGTGGTGGCGACGGTGGCGTTCGGCATGGGCATCAATAAACCAAACGTTCGCTTCGTGGTCCACTTTGATATTCCGCGCAATATCGAATCCTATTATCAGGAAACCGGACGCGCCGGGCGTGATGGCCTGCCCGCGGAAGCGATGCTGTTTTACGATCCGGCTGATATGGCGTGGCTGCGCCGTTGTCTGGAAGAGAAGCCGCAGGGGCAGTTGCAGGATATCGAGCGCCACAAACTCAATGCGATGGGCGCGTTTGCCGAAGCGCAA  >  NC_000913/4006728‑4006997

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A