Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A18 F73 I1 R1 22 83.4 2868466 99.3% 2848386 139.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,365,519 C→A A419S (GCC→TCC)  dcuA ← C4‑dicarboxylate transporter DcuA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,365,5190CA100.0% 375.4 / NA 105A419S (GCC→TCC) dcuAC4‑dicarboxylate transporter DcuA
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (62/43);  total (62/43)

Only 100 of 105 total aligned reads displayed.

CAAGAGAGAGGTCACTATACAACGGACGGGGGAAGGATGTTAGTCGGCGGGAAAGAAAGCGGGGCGTGAACGCCCCGCGATTGATCATTACAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGCAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGATACGGGTAGTACCCGTGTCATCCATCTGTACCGCAGCAACCAGCGTCGGGTAGGTCGGCAGAATGAACAGACCAGAC  >  NC_000913/4365385‑4365649
                                                                                                                                      |                                                                                                                                  
cAAGAGAGAGGTCACTATACAACGGACGGGGGAAGGATGTTAGTCGGCGGGAAAGAAAGCGGGGCGTGAACGCCCCGCGATTGATCATTACAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAacac                                                                                                                               >  2:282358/1‑140 (MQ=255)
   gagagagGTCACTATACAACGGACGGGGGAAGGATGTTAGTCGGCGGGAAAGAAAGCGGGGCGTGAACGCCCCGCGATTGATCATTACAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCa                                                                                                                            <  2:858830/140‑1 (MQ=255)
        agGTCACTATACAACGGACGGGGGAAGGATGTTAGTCGGCGGGAAAGAAAGCGGGGCGTGAACGCCCCGCGATTGATCATTACAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTa                                                                                                                       >  1:1190844/1‑140 (MQ=255)
        agGTCACTATACAACGGACGGGGGAAGGATGTTAGTCGGCGGGAAAGAAAGCGGGGCGTGAACGCCCCGCGATTGATCATTACAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTa                                                                                                                       >  2:846481/1‑140 (MQ=255)
          gTCACTATACAACGGACGGGGGAAGGATGTTAGTCGGCGGGAAAGAAAGCGGGGCGTGAACGCCCCGCGATTGATCATTACAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTAcc                                                                                                                     <  2:420505/140‑1 (MQ=255)
          gTCACTATACAACGGACGGGGGAAGGATGTTAGTCGGCGGGAAAGAAAGCGGGGCGTGAACGCCCCGCGATTGATCATTACAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTAc                                                                                                                      <  1:68919/139‑1 (MQ=255)
          gTCACTATACAACGGACGGGGGAAGGATGTTAGTCGGCGGGAAAGAAAGCGGGGCGTGAACGCCCCGCGATTGATCATTACAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTAc                                                                                                                      >  2:68919/1‑139 (MQ=255)
             aCTATACAACGGACGGGGGAAGGATGTTAGTCGGCGGGAAAGAAAGCGGGGCGTGAACGCCCCGCGATTGATCATTACAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCgg                                                                                                                  >  1:753493/1‑140 (MQ=255)
              cTATACAACGGACGGGGGAAGGATGTTAGTCGGCGGGAAAGAAAGCGGGGCGTGAACGCCCCGCGATTGATCATTACAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTGCCCggg                                                                                                                 <  2:1002510/140‑1 (MQ=255)
                   cAACGGACGGGGGAAGGATGTTAGTCGGCGGGAAAGAAAGCGGGGCGTGAACGCCCCGCGATTGATCATTACAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATgaa                                                                                                            <  2:587035/140‑1 (MQ=255)
                    aaCGGACGGGGGAAGGATGTTAGTCGGCGGGAAAGAAAGCGGGGCGTGAACGCCCCGCGATTGATCATTACAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATgaag                                                                                                           >  2:500347/1‑140 (MQ=255)
                    aaCGGACGGGGGAAGGATGTTAGTCGGCGGGAAAGAAAGCGGGGCGTGAACGCCCCGCGATTGATCATTACAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATgaag                                                                                                           >  1:395198/1‑140 (MQ=255)
                     acggacggGGGAAGGATGTTAGTCGGCGGGAAAGAAAGCGGGGCGTGAACGCCCCGCGATTGATCATTACAGCATGAAGCTACCCAGCACGAAGTCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATgaaga                                                                                                          >  1:365873/1‑140 (MQ=255)
                      cggacggGGGAAGGATGTTAGTCGGCGGGAAAGAAAGCGGGGCGTGAACGCCCCGCGATTGATCATTACAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATgaagaa                                                                                                         >  1:575346/1‑140 (MQ=255)
                      cggacggGGGAAGGATGTTAGTCGGCGGGAAAGAAAGCGGGGCGTGAACGCCCCGCGATTGATCATTACAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATgaagaa                                                                                                         >  2:1199691/1‑140 (MQ=255)
                      cggacggGGGAAGGATGTTAGTCGGCGGGAAAGAAAGCGGGGCGTGAACGCCCCGCGATTGATCATTACAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATgaagaa                                                                                                         >  2:1295988/1‑140 (MQ=255)
                        gacggGGGAAGGATGTTAGTCGGCGGGAAAGAAAGCGGGGCGTGAACGCCCCGCGATTGATCATTACAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACg                                                                                                       >  1:364904/1‑140 (MQ=255)
                         acggGGGAAGGATGTTAGTCGGCGGGAAAGAAAGCGGGGCGTGAACGCCCCGCGATTGATCATTACAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACgg                                                                                                      >  2:330264/1‑140 (MQ=255)
                         acggGGGAAGGATGTTAGTCGGCGGGAAAGAAAGCGGGGCGTGAACGCCCCGCGATTGATCATTACAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACgg                                                                                                      <  2:395198/140‑1 (MQ=255)
                         acggGGGAAGGATGTTAGTCGGCGGGAAAGAAAGCGGGGCGTGAACGCCCCGCGATTGATCATTACAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACgg                                                                                                      >  2:605995/1‑140 (MQ=255)
                         acggGGGAAGGATGTTAGTCGGCGGGAAAGAAAGCGGGGCGTGAACGCCCCGCGATTGATCATTACAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACgg                                                                                                      >  1:497867/1‑140 (MQ=255)
                         acggGGGAAGGATGTTAGTCGGCGGGAAAGAAAGCGGGGCGTGAACGCCCCGCGATTGATCATTACAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACgg                                                                                                      >  1:821400/1‑140 (MQ=255)
                         acggGGGAAGGATGTTAGTCGGCGGGAAAGAAAGCGGGGCGTGAACGCCCCGCGATTGATCATTACAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACgg                                                                                                      >  1:816739/1‑140 (MQ=255)
                           gggggAAGGATGTTAGTCGGCGGGAAAGAAAGCGGGGCGTGAACGCCCCGCGATTGATCATTACAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGAt                                                                                                    >  1:127333/1‑140 (MQ=255)
                           gggggAAGGATGTTAGTCGGCGGGAAAGAAAGCGGGGCGTGAACGCCCCGCGATTGATCATTACAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGAt                                                                                                    >  2:208741/1‑140 (MQ=255)
                           gggggAAGGATGTTAGTCGGCGGGAAAGAAAGCGGGGCGTGAACGCCCCGCGATTGATCATTACAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGAt                                                                                                    >  2:441868/1‑140 (MQ=255)
                           gggggAAGGATGTTAGTCGGCGGGAAAGAAAGCGGGGCGTGAACGCCCCGCGATTGATCATTACAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGAt                                                                                                    >  1:1275773/1‑140 (MQ=255)
                             gggAAGGATGTTAGTCGGCGGGAAAGAAAGCGGGGCGTGAACGCCCCGCGATTGATCATTACAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATgg                                                                                                  >  1:1266800/1‑140 (MQ=255)
                                aaGGATGTTAGTCGGCGGGAAAGAAAGCGGGGCGTGAACGCCCCGCGATTGATCATTACAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTg                                                                                               <  2:697493/140‑1 (MQ=255)
                                aaGGATGTTAGTCGGCGGGAAAGAAAGCGGGGCGTGAACGCCCCGCGATTGATCATTACAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTg                                                                                               <  2:118049/140‑1 (MQ=255)
                                       ttAGTCGGCGGGAAAGAAAGCGGGGCGTGAACGCCCCGCGATTGATCATTACAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGa                                                                                        >  1:613020/1‑140 (MQ=255)
                                               cggGAAAGAAAGCGGGGCGTGAACGCCCCGCGATTGATCATTACAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCg                                                                                >  1:307373/1‑140 (MQ=255)
                                                 ggAAAGAAAGCGGGGCGTGAACGCCCCGCGATTGATCATTACAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGAt                                                                              <  1:699642/140‑1 (MQ=255)
                                                 ggAAAGAAAGCGGGGCGTGAACGCCCCGCGATTGATCATTACAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGAt                                                                              <  1:846481/140‑1 (MQ=255)
                                                  gaaagaaaGCGGGGCGTGAACGCCCCGCGATTGATCATTACAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGATa                                                                             <  1:1266821/140‑1 (MQ=255)
                                                  gaaagaaaGCGGGGCGTGAACGCCCCGCGATTGATCATTACAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGATa                                                                             <  1:514952/140‑1 (MQ=255)
                                                  gaaagaaaGCGGGGCGTGAACGCCCCGCGATTGATCATTACAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGATa                                                                             <  1:500347/140‑1 (MQ=255)
                                                  gaaagaaaGCGGGGCGTGAACGCCCCGCGATTGATCATTACAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGATa                                                                             <  2:410606/140‑1 (MQ=255)
                                                  gaaagaaaGCGGGGCGTGAACGCCCCGCGATTGATCATTACAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGATa                                                                             <  2:1266800/140‑1 (MQ=255)
                                                   aaagaaagCGGGGCGTGAACGCCCCGCGATTGATCATTACAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGATAc                                                                            <  1:152914/140‑1 (MQ=255)
                                                      gaaagCGGGGCGTGAACGCCCCGCGATTGATCATTACAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGATACggg                                                                         <  2:1229791/140‑1 (MQ=255)
                                                       aaagCGGGGCGTGAACGCCCCGCGATTGATCATTACAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGATACGGgt                                                                        <  2:364904/140‑1 (MQ=255)
                                                       aaagCGGGGCGTGAACGCCCCGCGATTGATCATTACAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGATACGGgt                                                                        <  2:382462/140‑1 (MQ=255)
                                                           cGGGGCGTGAACGCCCCGCGATTGATCATTACAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGATACGGgtagta                                                                    <  1:330264/140‑1 (MQ=255)
                                                            ggggCGTGAACGCCCCGCGATTGATCATTACAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGATACGGGTAGTAc                                                                   <  1:1069621/140‑1 (MQ=255)
                                                             gggCGTGAACGCCCCGCGATTGATCATTACAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGATACGGGTAGTAcc                                                                  >  1:136499/1‑140 (MQ=255)
                                                              ggCGTGAACGCCCCGCGATTGATCATTACAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGATACGGGTAGTAccc                                                                 >  1:485207/1‑140 (MQ=255)
                                                              ggCGTGAACGCCCCGCGATTGATCATTACAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGATACGGGTAGTAccc                                                                 <  1:723490/140‑1 (MQ=255)
                                                              ggCGTGAACGCCCCGCGATTGATCATTACAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGATACGGGTAGTAccc                                                                 >  2:501995/1‑140 (MQ=255)
                                                               gCGTGAACGCCCCGCGATTGATCATTACAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGATACGGGTAGTACCCg                                                                <  2:148874/140‑1 (MQ=255)
                                                                 gTGAACGCCCCGCGATTGATCATTACAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGATACGGGTAGTACCCgtg                                                              <  1:1295988/140‑1 (MQ=255)
                                                                  tGAACGCCCCGCGATTGATCATTACAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGATACGGGTAGTACCCgtgt                                                             <  2:307373/140‑1 (MQ=255)
                                                                       gCCCCGCGATTGATCATTACAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGATACGGGTAGTACCCGTGTcatcc                                                        <  1:457988/140‑1 (MQ=255)
                                                                        ccccGCGATTGATCATTACAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGATACGGGTAGTACCCGTGTcatcca                                                       >  2:767699/1‑140 (MQ=255)
                                                                         cccGCGATTGATCATTACAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGATACGGGTAGTACCCGTGTcatccat                                                      <  2:127333/140‑1 (MQ=255)
                                                                          ccGCGATTGATCATTACAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGATACGGGTAGTACCCGTGTcatccatc                                                     >  1:720114/1‑140 (MQ=255)
                                                                                   aTCATTACAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGATACGGGTAGTACCCGTGTCATCCATCTGTACCgca                                            >  1:1358923/1‑140 (MQ=255)
                                                                                   aTCATTACAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAATACCCGGGTTGAAGTACGGATGGTTGAAGACGAATTTACCGATACGGGTAGTACCCGTGTCATCCATCTGTACCgca                                            >  1:1398731/1‑140 (MQ=255)
                                                                                       ttACAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGATACGGGTAGTACCCGTGTCATCCATCTGTACCGCAGCaa                                        >  2:495984/1‑140 (MQ=255)
                                                                                        tACAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGATACGGGTAGTACCCGTGTCATCCATCTGTACCGCAGCAAc                                       <  1:99259/140‑1 (MQ=255)
                                                                                        tACAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGATACGGGTAGTACCCGTGTCATCCATCTGTACCGCAGCAAc                                       <  2:575346/140‑1 (MQ=255)
                                                                                        tACAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGATACGGGTAGTACCCGTGTCATCCATCTGTACCGCAGCAAc                                       <  2:497867/140‑1 (MQ=255)
                                                                                        tACAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGATACGGGTAGTACCCGTGTCATCCATCTGTACCGCAGCAAc                                       <  2:816739/140‑1 (MQ=255)
                                                                                        tACAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGATACGGGTAGTACCCGTGTCATCCATCTGTACCGCAGCAAc                                       <  1:605995/140‑1 (MQ=255)
                                                                                        tACAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGATACGGGTAGTACCCGTGTCATCCATCTGTACCGCAGCAAc                                       <  2:613020/140‑1 (MQ=255)
                                                                                          cAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGATACGGGTAGTACCCGTGTCATCCATCTGTACCGCAGCAACCa                                     >  2:773639/1‑140 (MQ=255)
                                                                                          cAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGATACGGGTAGTACCCGTGTCATCCATCTGTACCGCAGCAACCa                                     >  2:323648/1‑140 (MQ=255)
                                                                                             cATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGATACGGGTAGTACCCGTGTCATCCATCTGTACCGCAGCAACCAGCg                                  <  1:208741/140‑1 (MQ=255)
                                                                                             cATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGATACGGGTAGTACCCGTGTCATCCATCTGTACCGCAGCAACCAGCg                                  >  2:253085/1‑140 (MQ=255)
                                                                                             cATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGATACGGGTAGTACCCGTGTCATCCATCTGTACCGCAGCAACCAGCg                                  >  2:82760/1‑140 (MQ=255)
                                                                                             cATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGATACGGGTAGTACCCGTGTCATCCATCTGTACCGCAGCAACCAGCg                                  >  1:884032/1‑140 (MQ=255)
                                                                                             cATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGATACGGGTAGTACCCGTGTCATCCATCTGTACCGCAGCAACCAGCg                                  >  1:440488/1‑140 (MQ=255)
                                                                                             cATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGATACGGGTAGTACCCGTGTCATCCATCTGTACCGCAGCAACCAGCg                                  >  2:1299267/1‑140 (MQ=255)
                                                                                             cATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGATGAAGACGAATTTACCGATACGGGTAGTACCCGTGTCATCCATCTGTACCGCAGCAACCAGCg                                  >  2:1038569/1‑140 (MQ=255)
                                                                                              aTGAAGCTACCCAGCACGAAGTCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGATACGGGTAGTACCCGTGTCATCCATCTGTACCGCAGCAACCAGCGt                                 <  2:365873/140‑1 (MQ=255)
                                                                                               tGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGATACGGGTAGTACCCGTGTCATCCATCTGTACCGCAGCAACCAGCGTc                                >  1:914174/1‑140 (MQ=255)
                                                                                               tGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGATACGGGTAGTACCCGTGTCATCCATCTGTACCGCAGCAACCAGCGTc                                >  2:735607/1‑140 (MQ=255)
                                                                                                  aGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGATACGGGTAGTACCCGTGTCATCCATCTGTACCGCAGCAACCAGCGTCggg                             >  2:198197/1‑140 (MQ=255)
                                                                                                  aGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGATACGGGTAGTACCCGTGTCATCCATCTGTACCGCAGCAACCAGCGTCggg                             >  1:96734/1‑140 (MQ=255)
                                                                                                  aGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGATACGGGTAGTACCCGTGTCATCCATCTGTACCGCAGCAACCAGCGTCggg                             >  2:584540/1‑140 (MQ=255)
                                                                                                     tACCCAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGATACGGGTAGTACCCGTGTCATCCATCTGTACCGCAGCAACCAGCGTCGGGTAg                          >  2:1121267/1‑140 (MQ=255)
                                                                                                         cAGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGATACGGGTAGTACCCGTGTCATCCATCTGTACCGCAGCAACCAGCGTCGGGTAGGTCg                      <  1:76243/140‑1 (MQ=255)
                                                                                                          aGCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGATACGGGTAGTACCCGTGTCATCCATCTGTACCGCAGCAACCAGCGTCGGGTAGGTCgg                     <  1:1121267/140‑1 (MQ=255)
                                                                                                           gCACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGATACGGGTAGTACCCGTGTCATCCATCTGTACCGCAGCAACCAGCGTCGGGTAGGTCGGc                    <  1:282358/140‑1 (MQ=255)
                                                                                                            cACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGATACGGGTAGTACCCGTGTCATCCATCTGTACCGCAGCAACCAGCGTCGGGTAGGTCGGCa                   >  2:294746/1‑140 (MQ=255)
                                                                                                            cACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGATACGGGTAGTACCCGTGTCATCCATCTGTACCGCAGCAACCAGCGTCGGGTAGGTCGGCa                   >  2:131097/1‑140 (MQ=255)
                                                                                                            cACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGATACGGGTAGTACCCGTGTCATCCATCTGTACCGCAGCAACCAGCGTCGGGTAGGTCGGCa                   >  2:586187/1‑140 (MQ=255)
                                                                                                            cACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGATACGGGTAGTACCCGTGTCATCCATCTGTACCGCAGCAACCAGCGTCGGGTAGGTCGGCa                   >  2:446565/1‑140 (MQ=255)
                                                                                                            cACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGATACGGGTAGTACCCGTGTCATCCATCTGTACCGCAGCAACCAGCGTCGGGTAGGTCGGCa                   >  2:336281/1‑140 (MQ=255)
                                                                                                            cACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGATACGGGTAGTACCCGTGTCATCCATCTGTACCGCAGCAACCAGCGTCGGGTAGGTCGGCa                   >  2:1409587/1‑140 (MQ=255)
                                                                                                            cACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGATACGGGTAGTACCCGTGTCATCCATCTGTACCGCAGCAACCAGCGTCGGGTAGGTCGGCa                   >  2:760650/1‑140 (MQ=255)
                                                                                                            cACGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGATACGGGTAGTACCCGTGTCATCCATCTGTACCGCAGCAACCAGCGTCGGGTAGGTCGGCa                   >  2:229736/1‑140 (MQ=255)
                                                                                                             aCGAAGCCGAAGCAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGATACGGGTAGTACCCGTGTCATCCATCTGTACCGCAGCAACCAGCGTCGGGTAGGTCGGCAg                  <  2:1275773/140‑1 (MQ=255)
                                                                                                              cgaagccgaagcAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGATACGGGTAGTACCCGTGTCATCCATCTGTACCGCAGCAACCAGCGTCGGGTAGGTCGGCAGa                 <  2:136499/140‑1 (MQ=255)
                                                                                                                 agccgaagcAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGATACGGGTAGTACCCGTGTCATCCATCTGTACCGCAGCAACCAGCGTCGGGTAGGTCGGCAGAATg              >  2:1084681/1‑140 (MQ=255)
                                                                                                                 agccgaagcAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGATACGGGTAGTACCCGTGTCATCCATCTGTACCGCAGCAACCAGCGTCGGGTAGGTCGGCAGAATg              >  1:392792/1‑140 (MQ=255)
                                                                                                                    cgaagcAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGATACGGGTAGTACCCGTGTCATCCATCTGTACCGCAGCAACCAGCGTCGGGTAGGTCGGCAGAATGAAc           <  1:995688/140‑1 (MQ=255)
                                                                                                                       agcAAACGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGATACGGGTAGTACCCGTGTCATCCATCTGTACCGCAGCAACCAGCGTCGGGTAGGTCGGCAGAATGAAcaga        <  1:760650/140‑1 (MQ=255)
                                                                                                                            aCGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGATACGGGTAGTACCCGTGTCATCCATCTGTACCGCAGCAACCAGCGTCGGGTAGGTCGGCAGAATGAAcagaccaga   <  1:999739/140‑1 (MQ=255)
                                                                                                                             cGGCCAGGGAAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGATACGGGTAGTACCCGTGTCATCCATCTGTACCGCAGCAACCAGCGTCGGGTAGGTCGGCAGAATGAAcagaccagac  >  1:460036/1‑140 (MQ=255)
                                                                                                                                      |                                                                                                                                  
CAAGAGAGAGGTCACTATACAACGGACGGGGGAAGGATGTTAGTCGGCGGGAAAGAAAGCGGGGCGTGAACGCCCCGCGATTGATCATTACAGCATGAAGCTACCCAGCACGAAGCCGAAGCAAACGGCCAGGGCAACACCCAGAGTACCCGGGATGAAGAACGGATGGTTGAAGACGAATTTACCGATACGGGTAGTACCCGTGTCATCCATCTGTACCGCAGCAACCAGCGTCGGGTAGGTCGGCAGAATGAACAGACCAGAC  >  NC_000913/4365385‑4365649

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A